Wall clock time and date at job start Tue Mar 31 2020 23:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99991 * 2 1 4 4 H 1.08999 * 109.52446 * 29.92662 * 3 2 1 5 5 C 1.52753 * 109.56745 * 269.96711 * 3 2 1 6 6 N 1.46929 * 109.00781 * 185.55411 * 5 3 2 7 7 C 1.34778 * 120.62735 * 233.58205 * 6 5 3 8 8 O 1.21347 * 120.00195 * 6.91104 * 7 6 5 9 9 C 1.49456 * 119.99738 * 186.90513 * 7 6 5 10 10 O 1.21349 * 119.99965 * 6.66006 * 9 7 6 11 11 N 1.34773 * 119.99889 * 186.65638 * 9 7 6 12 12 C 1.47022 * 125.65150 * 359.97117 * 11 9 7 13 13 C 1.54319 * 107.27553 * 178.97649 * 12 11 9 14 14 C 1.55159 * 102.94142 * 337.81335 * 13 12 11 15 15 O 1.42900 * 111.00353 * 277.38650 * 14 13 12 16 16 C 1.50699 * 111.00718 * 153.57574 * 14 13 12 17 17 H 1.07996 * 119.99841 * 248.74599 * 16 14 13 18 18 C 1.37872 * 120.00113 * 68.73825 * 16 14 13 19 19 N 1.31514 * 120.00053 * 4.93523 * 18 16 14 20 20 Si 1.86805 * 120.00206 * 184.92890 * 18 16 14 21 21 H 1.48501 * 109.47213 * 270.00858 * 20 18 16 22 22 H 1.48498 * 109.46566 * 30.00304 * 20 18 16 23 23 H 1.48493 * 109.47023 * 150.00089 * 20 18 16 24 24 C 1.47466 * 125.62854 * 179.97438 * 11 9 7 25 25 C 1.46919 * 118.73887 * 53.31190 * 6 5 3 26 26 C 1.53189 * 108.77551 * 306.64044 * 25 6 5 27 27 C 1.53042 * 109.31158 * 54.63614 * 26 25 6 28 28 H 1.09000 * 109.45938 * 58.65308 * 27 26 25 29 29 C 1.53003 * 109.46322 * 178.62640 * 27 26 25 30 30 H 1.08998 * 109.46980 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46908 * 299.99834 * 1 2 3 32 32 H 1.08999 * 109.47104 * 59.99682 * 1 2 3 33 33 H 1.08998 * 109.50903 * 65.67533 * 5 3 2 34 34 H 1.09000 * 109.43416 * 305.39106 * 5 3 2 35 35 H 1.09013 * 109.87539 * 59.56239 * 12 11 9 36 36 H 1.09001 * 109.88660 * 298.40193 * 12 11 9 37 37 H 1.08994 * 110.72571 * 219.45006 * 13 12 11 38 38 H 1.08996 * 110.87419 * 96.24215 * 13 12 11 39 39 H 0.96702 * 113.99996 * 171.81840 * 15 14 13 40 40 H 0.97001 * 120.00118 * 354.94350 * 19 18 16 41 41 H 1.09000 * 110.35364 * 85.24802 * 24 11 9 42 42 H 1.09005 * 110.40545 * 322.91393 * 24 11 9 43 43 H 1.09000 * 109.58601 * 66.42983 * 25 6 5 44 44 H 1.09004 * 109.59112 * 186.85496 * 25 6 5 45 45 H 1.09000 * 109.49790 * 174.58232 * 26 25 6 46 46 H 1.08999 * 109.50028 * 294.65490 * 26 25 6 47 47 H 1.08996 * 109.46856 * 59.99676 * 29 27 26 48 48 H 1.09000 * 109.47299 * 179.97438 * 29 27 26 49 49 H 1.08995 * 109.46981 * 300.00140 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 2.0004 0.5125 5 6 2.2191 1.7725 -1.4393 6 7 2.9370 3.0544 -1.4271 7 6 2.4422 4.1247 -2.0798 8 8 1.3372 4.0737 -2.5787 9 6 3.2544 5.3746 -2.1889 10 8 4.4029 5.3879 -1.7974 11 7 2.7112 6.4868 -2.7221 12 6 1.3384 6.6094 -3.2339 13 6 1.1583 8.0632 -3.7190 14 6 2.2557 8.8298 -2.9345 15 8 1.8089 9.1583 -1.6175 16 6 2.6879 10.0666 -3.6792 17 1 3.6777 10.1205 -4.1077 18 6 1.8197 11.1291 -3.8136 19 7 0.6512 11.1038 -3.2105 20 14 2.3030 12.6048 -4.8520 21 1 2.9994 13.6025 -4.0006 22 1 3.2097 12.1663 -5.9432 23 1 1.0842 13.2183 -5.4377 24 6 3.3959 7.7822 -2.8887 25 6 4.2014 3.1489 -0.6848 26 6 3.9676 2.6679 0.7507 27 6 3.3594 1.2639 0.7213 28 1 4.0323 0.5876 0.1941 29 6 3.1561 0.7663 2.1538 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.2515 1.9002 -1.9246 34 1 2.8061 1.0300 -1.9799 35 1 0.6255 6.3931 -2.4380 36 1 1.1896 5.9200 -4.0650 37 1 0.1674 8.4362 -3.4601 38 1 1.3286 8.1381 -4.7930 39 1 2.4990 9.5252 -1.0481 40 1 0.3695 10.3085 -2.7320 41 1 3.9607 7.7954 -3.8209 42 1 4.0549 7.9754 -2.0422 43 1 4.9534 2.5210 -1.1627 44 1 4.5414 4.1844 -0.6724 45 1 4.9173 2.6418 1.2849 46 1 3.2843 3.3503 1.2563 47 1 2.4836 1.4427 2.6813 48 1 2.7225 -0.2336 2.1331 49 1 4.1169 0.7355 2.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332376977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:55 Heat of formation + Delta-G solvation = -166.517319 kcal Electronic energy + Delta-G solvation = -31391.006984 eV Core-core repulsion = 27124.990898 eV Total energy + Delta-G solvation = -4266.016086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27874 -40.76746 -39.63453 -39.13150 -37.69899 -36.34365 -34.80504 -34.31536 -31.82014 -31.62519 -30.13857 -29.57789 -27.78113 -27.04936 -25.62236 -24.25899 -24.15219 -22.99261 -21.81041 -21.47129 -20.37533 -19.49337 -18.50463 -18.32090 -17.68007 -17.41797 -17.25989 -16.95508 -16.59174 -16.38510 -15.96321 -15.66994 -15.33043 -15.08592 -14.98668 -14.72354 -14.66867 -14.54208 -14.26866 -14.13340 -13.98338 -13.84693 -13.63614 -13.36484 -12.95132 -12.87180 -12.65827 -12.58025 -12.51354 -12.32138 -12.26560 -12.07699 -11.98884 -11.89562 -11.65077 -11.50314 -11.30414 -10.85833 -10.58749 -10.35971 -10.20858 -9.92065 -9.73034 -8.49454 -6.38438 0.17843 1.02549 1.59031 1.65561 1.83191 1.93737 2.15269 2.59813 2.70854 2.95676 3.20909 3.55325 3.60431 3.65400 3.74348 3.82432 3.97097 3.98095 4.07624 4.16391 4.27686 4.34162 4.37652 4.42931 4.46557 4.54266 4.58525 4.66994 4.71243 4.73080 4.77598 4.81854 4.82367 4.93279 4.99614 5.02147 5.07553 5.10352 5.25132 5.29059 5.38969 5.41487 5.83790 5.87745 6.07474 6.13332 6.18538 6.45320 6.67804 6.75554 7.10165 7.54854 8.87528 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.002540 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.707820 B =11020.531029 C =11439.041484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.385 6.385 3 C 0.087 3.913 4 H 0.057 0.943 5 C 0.088 3.912 6 N -0.573 5.573 7 C 0.511 3.489 8 O -0.537 6.537 9 C 0.513 3.487 10 O -0.533 6.533 11 N -0.576 5.576 12 C 0.123 3.877 13 C -0.111 4.111 14 C 0.223 3.777 15 O -0.578 6.578 16 C -0.644 4.644 17 H 0.054 0.946 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 1.112 2.888 21 H -0.278 1.278 22 H -0.272 1.272 23 H -0.288 1.288 24 C 0.096 3.904 25 C 0.060 3.940 26 C -0.121 4.121 27 C -0.087 4.087 28 H 0.087 0.913 29 C -0.138 4.138 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.368 0.632 40 H 0.279 0.721 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.129 0.871 45 H 0.108 0.892 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.060 0.940 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -21.280 7.434 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.303 6.303 3 C 0.028 3.972 4 H 0.075 0.925 5 C -0.034 4.034 6 N -0.307 5.307 7 C 0.293 3.707 8 O -0.414 6.414 9 C 0.297 3.703 10 O -0.413 6.413 11 N -0.308 5.308 12 C 0.001 3.999 13 C -0.149 4.149 14 C 0.183 3.817 15 O -0.384 6.384 16 C -0.682 4.682 17 H 0.072 0.928 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.935 3.065 21 H -0.203 1.203 22 H -0.196 1.196 23 H -0.213 1.213 24 C -0.026 4.026 25 C -0.060 4.060 26 C -0.159 4.159 27 C -0.106 4.106 28 H 0.106 0.894 29 C -0.195 4.195 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.215 0.785 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.146 0.854 45 H 0.126 0.874 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.684 -20.327 6.707 21.720 hybrid contribution 0.467 -0.935 0.564 1.187 sum 4.150 -21.262 7.271 22.851 Atomic orbital electron populations 1.22999 0.79812 1.04097 1.00428 1.87883 1.20971 1.26570 1.94856 1.22312 0.96131 0.84891 0.93828 0.92526 1.22177 0.98571 0.83688 0.99005 1.47926 1.24536 1.09361 1.48876 1.19926 0.85948 0.84663 0.80150 1.90728 1.19896 1.82873 1.47932 1.19949 0.87010 0.84062 0.79262 1.90432 1.18207 1.83554 1.49110 1.48494 1.15126 1.10430 1.56713 1.22096 0.81586 0.97316 0.98885 1.22670 0.99902 0.92325 1.00003 1.20033 0.89244 0.91122 0.81286 1.86365 1.41491 1.85169 1.25410 1.22406 1.02580 1.03058 1.40124 0.92768 1.26980 0.93545 1.03786 0.96599 1.70710 1.21901 1.32001 1.30808 0.82997 0.75557 0.72766 0.75210 1.20347 1.19647 1.21339 1.23093 0.96676 0.81256 1.01595 1.23072 0.83556 1.07708 0.91662 1.22004 1.02921 0.95366 0.95625 1.21252 0.94404 0.97332 0.97562 0.89439 1.21706 1.02336 1.01246 0.94256 0.87606 0.93433 0.94135 0.89949 0.88956 0.91750 0.90007 0.92008 0.90239 0.78486 0.90893 0.90548 0.90793 0.89578 0.85408 0.87405 0.92320 0.93277 0.92105 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.38 -6.99 9.62 -148.98 -1.43 -8.42 16 3 C 0.09 1.62 2.19 30.53 0.07 1.69 16 4 H 0.06 1.16 7.79 -2.39 -0.02 1.14 16 5 C 0.09 1.89 6.03 86.22 0.52 2.41 16 6 N -0.57 -14.51 2.98 -821.33 -2.45 -16.95 16 7 C 0.51 16.41 7.70 87.27 0.67 17.08 16 8 O -0.54 -19.10 13.60 -3.24 -0.04 -19.14 16 9 C 0.51 18.19 7.78 87.27 0.68 18.86 16 10 O -0.53 -19.01 13.40 -3.24 -0.04 -19.06 16 11 N -0.58 -22.00 3.33 -813.25 -2.71 -24.70 16 12 C 0.12 4.73 5.49 86.73 0.48 5.21 16 13 C -0.11 -4.84 5.67 31.78 0.18 -4.66 16 14 C 0.22 10.33 0.69 -10.15 -0.01 10.33 16 15 O -0.58 -27.62 11.36 -148.98 -1.69 -29.31 16 16 C -0.64 -33.00 8.24 25.60 0.21 -32.79 16 17 H 0.05 2.74 7.77 -2.91 -0.02 2.72 16 18 C -0.01 -0.27 5.32 84.65 0.45 0.18 16 19 N -0.92 -52.89 13.39 21.45 0.29 -52.60 16 20 Si 1.11 47.36 29.91 68.60 2.05 49.41 16 21 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 23 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 24 C 0.10 3.88 6.07 86.85 0.53 4.41 16 25 C 0.06 1.28 6.02 86.36 0.52 1.80 16 26 C -0.12 -1.97 5.36 30.67 0.16 -1.81 16 27 C -0.09 -1.34 2.43 -10.76 -0.03 -1.36 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 C -0.14 -1.84 9.04 71.98 0.65 -1.19 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.05 0.63 8.09 -2.39 -0.02 0.61 16 32 H 0.04 0.61 8.02 -2.39 -0.02 0.59 16 33 H 0.08 2.00 6.87 -2.39 -0.02 1.98 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 2.53 7.74 -2.38 -0.02 2.51 16 36 H 0.08 2.93 7.56 -2.39 -0.02 2.92 16 37 H 0.06 2.91 7.10 -2.39 -0.02 2.90 16 38 H 0.08 3.43 8.03 -2.39 -0.02 3.41 16 39 H 0.37 15.75 9.10 -74.06 -0.67 15.07 16 40 H 0.28 16.31 4.97 -92.71 -0.46 15.85 16 41 H 0.08 3.08 8.01 -2.39 -0.02 3.06 16 42 H 0.07 2.94 8.04 -2.38 -0.02 2.92 16 43 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.13 3.37 4.22 -55.45 -0.23 3.14 16 45 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.06 0.86 7.65 -2.39 -0.02 0.84 16 49 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -62.97 383.84 0.66 -62.31 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 0.37 Total: 36.74 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 6.31 Total: 21.73 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -4.86 Total: -94.26 kcal Atomic # 8 Polarization: -72.72 SS G_CDS: -3.21 Total: -75.93 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.05 Total: 49.41 kcal Total: -62.97 0.66 -62.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332376977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.205 kcal (2) G-P(sol) polarization free energy of solvation -62.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds