Wall clock time and date at job start Tue Mar 31 2020 23:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.44518 * 2 1 4 4 C 1.53045 * 109.45894 * 240.03384 * 2 1 3 5 5 C 1.53626 * 109.23985 * 178.49176 * 4 2 1 6 6 N 1.46931 * 108.54018 * 54.85615 * 5 4 2 7 7 C 1.34771 * 120.62688 * 126.36868 * 6 5 4 8 8 O 1.21352 * 120.00037 * 188.47712 * 7 6 5 9 9 C 1.49453 * 120.00249 * 8.47997 * 7 6 5 10 10 O 1.21346 * 120.00036 * 6.82070 * 9 7 6 11 11 N 1.34771 * 120.00080 * 186.81970 * 9 7 6 12 12 C 1.47429 * 125.64943 * 359.69379 * 11 9 7 13 13 C 1.55135 * 104.72316 * 155.81338 * 12 11 9 14 14 C 1.55166 * 101.48379 * 37.29693 * 13 12 11 15 15 O 1.42895 * 110.71728 * 82.69485 * 14 13 12 16 16 C 1.50698 * 110.71701 * 205.97055 * 14 13 12 17 17 H 1.08000 * 120.00189 * 354.97400 * 16 14 13 18 18 C 1.37879 * 119.99818 * 174.98110 * 16 14 13 19 19 N 1.31512 * 120.00005 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99961 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47098 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47383 * 119.99372 * 20 18 16 23 23 H 1.48505 * 109.46952 * 239.99378 * 20 18 16 24 24 C 1.47022 * 125.64859 * 179.97438 * 11 9 7 25 25 C 1.46926 * 118.73798 * 306.09184 * 6 5 4 26 26 C 1.53036 * 109.45538 * 119.96605 * 2 1 3 27 27 H 1.08999 * 109.50010 * 61.43455 * 26 2 1 28 28 C 1.52995 * 109.52552 * 301.35088 * 26 2 1 29 29 O 1.42907 * 109.46900 * 175.14636 * 28 26 2 30 30 H 1.08996 * 109.47031 * 300.03909 * 1 2 3 31 31 H 1.09001 * 109.46664 * 60.03241 * 1 2 3 32 32 H 1.08997 * 109.47362 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.49889 * 298.56676 * 4 2 1 34 34 H 1.09002 * 109.49776 * 58.63465 * 4 2 1 35 35 H 1.08995 * 109.73839 * 295.12075 * 5 4 2 36 36 H 1.09001 * 109.66365 * 174.54903 * 5 4 2 37 37 H 1.08996 * 110.36901 * 274.74205 * 12 11 9 38 38 H 1.08998 * 110.36761 * 37.06793 * 12 11 9 39 39 H 1.09001 * 111.19208 * 279.19315 * 13 12 11 40 40 H 1.08996 * 110.90451 * 155.27589 * 13 12 11 41 41 H 0.96703 * 113.99612 * 185.02339 * 15 14 13 42 42 H 0.97001 * 120.00324 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.88845 * 300.44838 * 24 11 9 44 44 H 1.09008 * 109.88388 * 61.61316 * 24 11 9 45 45 H 1.09002 * 109.58466 * 173.65209 * 25 6 5 46 46 H 1.08996 * 109.58629 * 293.93080 * 25 6 5 47 47 H 1.08998 * 109.47184 * 295.14609 * 28 26 2 48 48 H 1.09003 * 109.46921 * 55.15034 * 28 26 2 49 49 H 0.96706 * 113.99822 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5757 -0.6849 -1.2643 6 7 4.0678 -1.2489 0.0001 7 6 4.9620 -2.2573 0.0000 8 8 5.2450 -2.8173 1.0387 9 6 5.6052 -2.6857 -1.2792 10 8 5.4184 -2.0491 -2.2952 11 7 6.3925 -3.7792 -1.3043 12 6 6.7085 -4.6373 -0.1479 13 6 7.0770 -6.0118 -0.7658 14 6 7.8408 -5.5802 -2.0457 15 8 9.2039 -5.2766 -1.7427 16 6 7.7536 -6.6491 -3.1044 17 1 7.2800 -7.5936 -2.8806 18 6 8.2786 -6.4213 -4.3588 19 7 8.8550 -5.2711 -4.6315 20 14 8.1712 -7.7465 -5.6710 21 1 7.4812 -8.9384 -5.1155 22 1 7.4075 -7.2298 -6.8351 23 1 9.5399 -8.1250 -6.1054 24 6 7.0834 -4.3106 -2.4883 25 6 3.5713 -0.6886 1.2643 26 6 2.0398 -0.7207 1.2501 27 1 1.6977 -1.7556 1.2383 28 6 1.5027 -0.0196 2.4993 29 8 1.8853 -0.7579 3.6616 30 1 -0.3633 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.6978 -1.7556 -1.2384 34 1 1.6568 -0.2210 -2.1399 35 1 3.9189 0.3449 -1.3631 36 1 3.9488 -1.2783 -2.0989 37 1 7.5532 -4.2298 0.4074 38 1 5.8383 -4.7348 0.5011 39 1 6.1834 -6.5828 -1.0179 40 1 7.7247 -6.5780 -0.0965 41 1 9.7053 -4.9284 -2.4927 42 1 9.2240 -5.1107 -5.5141 43 1 6.3561 -4.5627 -3.2600 44 1 7.7891 -3.5719 -2.8685 45 1 3.9416 -1.2845 2.0985 46 1 3.9164 0.3400 1.3686 47 1 1.9156 0.9876 2.5565 48 1 0.4154 0.0359 2.4457 49 1 1.5784 -0.3701 4.4926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334713143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:51 Heat of formation + Delta-G solvation = -154.712486 kcal Electronic energy + Delta-G solvation = -31344.276931 eV Core-core repulsion = 27078.772741 eV Total energy + Delta-G solvation = -4265.504190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.79013 -39.26004 -38.01139 -37.35184 -36.59648 -34.60888 -33.83177 -32.25628 -31.71463 -30.16700 -28.69272 -27.93578 -26.70858 -25.62289 -24.15538 -22.82405 -22.32626 -21.56423 -20.17834 -19.60565 -18.86791 -17.66594 -17.20218 -16.78329 -16.72284 -15.99174 -15.60283 -15.40392 -15.10105 -14.74807 -14.54931 -14.48782 -14.26908 -13.94248 -13.66420 -13.31204 -13.18228 -13.01598 -12.91644 -12.73643 -12.58103 -12.27508 -12.05802 -11.88854 -11.74019 -11.53636 -11.34897 -11.19741 -11.08979 -10.95816 -10.83171 -10.61233 -10.60474 -10.47569 -10.39758 -10.24980 -10.09470 -9.31931 -8.85391 -8.72836 -8.62712 -8.33423 -8.01929 -6.31010 -4.39412 1.78464 2.58192 3.19145 3.28135 3.31938 3.54349 3.75181 3.84328 4.25562 4.42742 4.47216 4.54190 4.69474 4.74799 4.97386 4.99894 5.11275 5.17684 5.23237 5.26989 5.35310 5.43660 5.49507 5.56441 5.65892 5.70568 5.80713 5.86839 5.88557 5.91134 5.94029 6.03538 6.07529 6.20388 6.29792 6.45785 6.51907 6.76359 6.82988 6.85698 7.17942 7.22615 7.31977 7.32487 7.70526 7.82480 8.01667 8.05935 8.43034 8.65030 9.27316 9.36068 10.76816 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.002721 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.907484 B =10287.797200 C =10984.426197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.073 0.927 4 C -0.128 4.128 5 C 0.067 3.933 6 N -0.588 5.588 7 C 0.511 3.489 8 O -0.517 6.517 9 C 0.508 3.492 10 O -0.530 6.530 11 N -0.572 5.572 12 C 0.101 3.899 13 C -0.121 4.121 14 C 0.247 3.753 15 O -0.583 6.583 16 C -0.535 4.535 17 H 0.068 0.932 18 C 0.070 3.930 19 N -0.895 5.895 20 Si 0.904 3.096 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.100 3.900 25 C 0.118 3.882 26 C -0.096 4.096 27 H 0.083 0.917 28 C 0.080 3.920 29 O -0.570 6.570 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.146 0.854 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.382 0.618 42 H 0.270 0.730 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.066 0.934 47 H 0.046 0.954 48 H 0.053 0.947 49 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.228 12.332 10.433 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.166 4.166 5 C -0.054 4.054 6 N -0.322 5.322 7 C 0.295 3.705 8 O -0.392 6.392 9 C 0.291 3.709 10 O -0.411 6.411 11 N -0.303 5.303 12 C -0.022 4.022 13 C -0.159 4.159 14 C 0.207 3.793 15 O -0.391 6.391 16 C -0.574 4.574 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.533 5.533 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.021 4.021 25 C -0.004 4.004 26 C -0.115 4.115 27 H 0.102 0.898 28 C 0.002 3.998 29 O -0.375 6.375 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.232 0.768 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.119 0.881 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.991 11.895 10.449 21.804 hybrid contribution -0.230 0.208 -0.943 0.993 sum -15.221 12.103 9.506 21.645 Atomic orbital electron populations 1.21924 0.94962 1.02152 1.01726 1.21144 0.95755 0.99570 0.94183 0.90810 1.22083 0.95843 1.01288 0.97422 1.22995 0.93295 1.01190 0.87935 1.47914 1.41845 1.34381 1.08098 1.20335 0.80118 0.80278 0.89813 1.90707 1.61926 1.52809 1.33760 1.19615 0.81179 0.81547 0.88553 1.90430 1.61552 1.53882 1.35266 1.48751 1.43683 1.24026 1.13851 1.22661 1.01039 0.90541 0.87916 1.22870 1.00124 0.94865 0.98013 1.19527 0.79749 0.89407 0.90640 1.86137 1.24038 1.87230 1.41708 1.21543 1.38925 1.01123 0.95783 0.91356 1.25086 0.93886 0.95779 0.98588 1.69703 1.38041 1.22751 1.22841 0.86339 0.77956 0.81556 0.81010 1.19563 1.20783 1.20735 1.23250 0.95962 0.97641 0.85226 1.21646 0.92842 0.99016 0.86899 1.21525 0.95587 1.01257 0.93131 0.89834 1.22260 0.98234 0.94029 0.85247 1.86546 1.80376 1.54210 1.16402 0.92549 0.92345 0.92455 0.91433 0.90324 0.91609 0.83722 0.91138 0.89862 0.90419 0.90299 0.76823 0.92033 0.90799 0.90985 0.88124 0.91587 0.93560 0.92902 0.77501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.81 37.16 0.33 -0.69 16 2 C -0.09 -0.73 2.23 -90.58 -0.20 -0.93 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -1.28 5.38 -26.38 -0.14 -1.42 16 5 C 0.07 0.86 6.01 -3.48 -0.02 0.84 16 6 N -0.59 -8.54 2.97 -173.01 -0.51 -9.05 16 7 C 0.51 9.13 7.68 -11.59 -0.09 9.04 16 8 O -0.52 -9.94 13.32 5.50 0.07 -9.86 16 9 C 0.51 10.20 7.77 -11.59 -0.09 10.11 16 10 O -0.53 -11.09 13.51 5.50 0.07 -11.02 16 11 N -0.57 -12.17 3.32 -170.88 -0.57 -12.74 16 12 C 0.10 1.99 5.97 -2.40 -0.01 1.97 16 13 C -0.12 -2.50 6.24 -24.46 -0.15 -2.65 16 14 C 0.25 5.97 0.85 -89.93 -0.08 5.89 16 15 O -0.58 -14.62 13.08 -35.23 -0.46 -15.09 16 16 C -0.54 -13.85 8.12 -34.44 -0.28 -14.13 16 17 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 18 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 19 N -0.89 -23.39 10.98 55.43 0.61 -22.78 16 20 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.10 2.38 5.24 -3.06 -0.02 2.37 16 25 C 0.12 1.44 5.56 -3.71 -0.02 1.42 16 26 C -0.10 -0.94 2.12 -90.50 -0.19 -1.13 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 28 C 0.08 0.62 6.18 37.16 0.23 0.85 16 29 O -0.57 -5.12 13.30 -35.23 -0.47 -5.59 16 30 H 0.06 0.32 6.30 -51.93 -0.33 -0.01 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.15 2.26 4.31 -54.81 -0.24 2.02 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.08 1.56 6.34 -51.93 -0.33 1.23 16 39 H 0.08 1.54 8.04 -51.93 -0.42 1.12 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.38 9.71 7.47 45.56 0.34 10.05 16 42 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 43 H 0.07 1.88 7.81 -51.93 -0.41 1.47 16 44 H 0.07 1.84 7.92 -51.92 -0.41 1.43 16 45 H 0.10 1.45 6.85 -51.93 -0.36 1.09 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.05 0.33 6.15 -51.93 -0.32 0.01 16 49 H 0.38 1.59 9.12 45.56 0.42 2.00 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -29.76 380.73 -7.61 -37.37 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -6.24 Total: 14.59 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -0.83 Total: 13.24 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.47 Total: -44.57 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.78 Total: -41.56 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.76 -7.61 -37.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334713143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.345 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds