Wall clock time and date at job start Tue Mar 31 2020 23:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00267 * 2 1 4 4 N 1.46497 * 109.46683 * 125.21572 * 3 2 1 5 5 C 1.37785 * 127.16531 * 84.80510 * 4 3 2 6 6 C 1.47048 * 126.50236 * 0.02562 * 5 4 3 7 7 C 1.38104 * 125.87428 * 353.23077 * 6 5 4 8 8 C 1.39280 * 107.66007 * 179.84243 * 7 6 5 9 9 C 1.38163 * 107.54061 * 0.41808 * 8 7 6 10 10 C 1.43202 * 125.97733 * 179.76026 * 9 8 7 11 11 N 7.94287 * 160.52566 * 223.45751 * 2 1 3 12 12 N 1.36863 * 125.87699 * 173.54399 * 6 5 4 13 13 C 1.46506 * 125.74847 * 359.97438 * 12 6 5 14 14 N 1.31561 * 106.99738 * 179.87283 * 5 4 3 15 15 N 1.28511 * 109.89325 * 0.39755 * 14 5 4 16 16 C 1.31500 * 110.12328 * 359.74746 * 15 14 5 17 17 N 1.38283 * 126.33980 * 180.02562 * 16 15 14 18 18 C 1.46902 * 111.00130 * 250.20891 * 17 16 15 19 19 C 1.46901 * 111.00037 * 14.16464 * 17 16 15 20 20 H 1.09004 * 109.47468 * 54.99590 * 19 17 16 21 21 C 1.52999 * 109.47155 * 294.99955 * 19 17 16 22 22 C 1.50700 * 109.47561 * 174.99778 * 19 17 16 23 23 H 1.08004 * 119.99687 * 0.02562 * 22 19 17 24 24 C 1.37871 * 120.00680 * 179.97438 * 22 19 17 25 25 N 1.31522 * 119.99712 * 0.02562 * 24 22 19 26 26 Si 1.86797 * 120.00566 * 180.02562 * 24 22 19 27 27 H 1.48505 * 109.46817 * 90.00013 * 26 24 22 28 28 H 1.48495 * 109.47540 * 210.00042 * 26 24 22 29 29 H 1.48497 * 109.46949 * 330.00631 * 26 24 22 30 30 H 1.08005 * 119.99981 * 357.00296 * 1 2 3 31 31 H 1.08003 * 120.00174 * 176.73606 * 1 2 3 32 32 H 1.08000 * 119.99471 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47119 * 245.21891 * 3 2 1 34 34 H 1.08997 * 109.46843 * 5.22112 * 3 2 1 35 35 H 1.08004 * 126.17271 * 359.96530 * 7 6 5 36 36 H 1.08005 * 126.23326 * 180.12754 * 8 7 6 37 37 H 1.08992 * 109.47156 * 92.57175 * 13 12 6 38 38 H 1.09003 * 109.46996 * 212.57492 * 13 12 6 39 39 H 1.08999 * 109.47098 * 332.56926 * 13 12 6 40 40 H 1.09004 * 109.47019 * 53.89509 * 18 17 16 41 41 H 1.08998 * 109.46816 * 173.88825 * 18 17 16 42 42 H 1.08996 * 109.46837 * 293.89637 * 18 17 16 43 43 H 1.08999 * 109.47502 * 300.00086 * 21 19 17 44 44 H 1.09003 * 109.47291 * 60.00039 * 21 19 17 45 45 H 1.09000 * 109.47577 * 179.97438 * 21 19 17 46 46 H 0.96994 * 119.99924 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9974 1.3296 1.1284 5 6 4.2714 0.8061 1.1661 6 6 4.9633 0.1089 0.0718 7 6 4.4043 -0.2545 -1.1376 8 6 5.3935 -0.8864 -1.8874 9 6 6.5440 -0.9104 -1.1229 10 6 7.8013 -1.4744 -1.5124 11 7 8.7985 -1.9222 -1.8214 12 7 6.2704 -0.2969 0.0790 13 6 7.2188 -0.1094 1.1798 14 7 4.7526 1.0512 2.3658 15 7 3.8763 1.6743 3.0695 16 6 2.7848 1.8704 2.3629 17 7 1.6346 2.5073 2.7913 18 6 0.5318 1.5504 2.9526 19 6 1.8757 3.2476 4.0371 20 1 2.7091 3.9358 3.8954 21 6 2.2126 2.2629 5.1585 22 6 0.6391 4.0257 4.4065 23 1 -0.2384 3.9750 3.7788 24 6 0.6274 4.8015 5.5462 25 7 1.6958 4.8629 6.3108 26 14 -0.9056 5.7653 6.0045 27 1 -1.7783 4.9272 6.8655 28 1 -0.5160 6.9940 6.7417 29 1 -1.6415 6.1408 4.7705 30 1 -0.5400 0.9341 0.0489 31 1 -0.5400 -0.9338 -0.0533 32 1 1.8499 -0.9354 -0.0004 33 1 2.6182 1.4043 -0.9330 34 1 1.3589 2.1314 0.0935 35 1 3.3847 -0.0784 -1.4472 36 1 5.2803 -1.2891 -2.8832 37 1 7.2041 -0.9874 1.8255 38 1 8.2218 0.0278 0.7758 39 1 6.9361 0.7709 1.7570 40 1 0.8485 0.7378 3.6065 41 1 -0.3273 2.0569 3.3926 42 1 0.2559 1.1465 1.9786 43 1 1.3793 1.5747 5.3003 44 1 3.1071 1.7001 4.8914 45 1 2.3919 2.8121 6.0827 46 1 1.6877 5.4089 7.1124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340428145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:47 Heat of formation + Delta-G solvation = 214.345473 kcal Electronic energy + Delta-G solvation = -29682.341994 eV Core-core repulsion = 25804.735780 eV Total energy + Delta-G solvation = -3877.606214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.68704 -41.30391 -37.43683 -36.72598 -36.30679 -33.27436 -32.95953 -32.71952 -31.12517 -28.86647 -28.46826 -27.09068 -26.64060 -25.42394 -25.21918 -23.49697 -21.90915 -21.23452 -20.79155 -19.69381 -19.52703 -18.56373 -16.96748 -16.38254 -16.23660 -16.07764 -15.63012 -15.23818 -15.15087 -14.71839 -14.37754 -13.97437 -13.82559 -13.68230 -13.61183 -13.30034 -13.24749 -13.17390 -12.73674 -12.54212 -12.44385 -12.38216 -12.20238 -11.74346 -11.67313 -11.45625 -11.20911 -10.98549 -10.81084 -10.57820 -10.36529 -10.13402 -9.98600 -9.93215 -9.68082 -9.47737 -9.13650 -8.88348 -8.48149 -8.28014 -7.41325 -6.08781 -4.16415 0.80337 1.66324 1.78886 1.93153 2.53603 2.63145 2.89226 3.19444 3.25020 3.30910 3.32446 3.34454 3.63014 4.11265 4.27549 4.46103 4.55518 4.57468 4.66306 4.87918 4.93014 5.05345 5.13617 5.22640 5.33872 5.43657 5.45955 5.59217 5.60052 5.72301 5.77239 5.94904 6.01175 6.14126 6.29392 6.37787 6.40383 6.43146 6.58487 6.62913 6.73529 6.86911 7.06598 7.17208 7.23719 7.38646 7.56741 7.67578 7.89040 8.24289 8.37695 8.83879 9.06742 9.48352 10.97359 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.002926 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.475048 B = 9567.867157 C =10711.719787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.186 4.186 3 C 0.132 3.868 4 N -0.464 5.464 5 C 0.197 3.803 6 C 0.151 3.849 7 C -0.191 4.191 8 C -0.105 4.105 9 C 0.052 3.948 10 C 0.286 3.714 11 N -0.412 5.412 12 N -0.396 5.396 13 C 0.061 3.939 14 N -0.272 5.272 15 N -0.306 5.306 16 C 0.403 3.597 17 N -0.456 5.456 18 C 0.029 3.971 19 C 0.229 3.771 20 H 0.049 0.951 21 C -0.179 4.179 22 C -0.515 4.515 23 H 0.064 0.936 24 C 0.064 3.936 25 N -0.884 5.884 26 Si 0.899 3.101 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.031 0.969 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.021 0.979 44 H 0.051 0.949 45 H 0.089 0.911 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 -10.995 -15.540 19.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.205 4.205 3 C 0.010 3.990 4 N -0.160 5.160 5 C -0.067 4.067 6 C 0.031 3.969 7 C -0.217 4.217 8 C -0.133 4.133 9 C -0.062 4.062 10 C -0.029 4.029 11 N -0.089 5.089 12 N -0.070 5.070 13 C -0.080 4.080 14 N -0.115 5.115 15 N -0.151 5.151 16 C 0.049 3.951 17 N -0.179 5.179 18 C -0.118 4.118 19 C 0.125 3.875 20 H 0.067 0.933 21 C -0.238 4.238 22 C -0.554 4.554 23 H 0.082 0.918 24 C -0.139 4.139 25 N -0.521 5.521 26 Si 0.727 3.273 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.198 1.198 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.050 0.950 41 H 0.115 0.885 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.070 0.930 45 H 0.107 0.893 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.759 -11.107 -14.682 18.790 hybrid contribution -1.869 0.266 0.045 1.889 sum 1.890 -10.841 -14.637 18.312 Atomic orbital electron populations 1.24033 0.95585 1.02803 0.96820 1.23150 0.96434 0.98063 1.02892 1.21179 0.92013 0.97896 0.87952 1.46069 1.12414 1.45239 1.12253 1.20931 0.84871 1.05449 0.95463 1.17200 0.83305 1.03012 0.93414 1.21261 1.00592 1.06930 0.92915 1.21073 0.90016 1.02474 0.99767 1.15632 0.90373 1.11119 0.89123 1.24258 0.91241 0.93036 0.94379 1.81302 1.09760 1.10584 1.07288 1.43904 1.09007 1.41470 1.12575 1.22455 0.91433 1.05948 0.88147 1.74351 1.23926 1.13338 0.99889 1.74984 0.99822 1.18145 1.22191 1.23193 0.95983 0.93904 0.82066 1.59217 0.99846 1.21856 1.37028 1.22542 0.94508 0.94300 1.00419 1.19394 0.98041 0.90399 0.79650 0.93291 1.22553 0.98582 0.99031 1.03638 1.21008 0.98466 1.27629 1.08269 0.91761 1.24891 0.96395 0.96514 0.96062 1.69918 1.27902 1.39597 1.14724 0.86482 0.82811 0.79466 0.78543 1.20677 1.21178 1.19835 0.87552 0.87624 0.86355 0.87562 0.87268 0.82708 0.82730 0.89703 0.90057 0.86684 0.94990 0.88499 0.92477 0.96038 0.93023 0.89286 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 12.45 29.01 0.36 -0.85 16 2 C -0.19 -1.66 8.31 -36.03 -0.30 -1.96 16 3 C 0.13 1.39 5.15 -5.20 -0.03 1.36 16 4 N -0.46 -6.96 2.82 -116.13 -0.33 -7.28 16 5 C 0.20 2.99 7.80 -153.67 -1.20 1.79 16 6 C 0.15 1.82 6.86 -82.10 -0.56 1.25 16 7 C -0.19 -1.75 9.61 -39.24 -0.38 -2.13 16 8 C -0.11 -0.87 10.80 -39.22 -0.42 -1.29 16 9 C 0.05 0.52 6.75 -83.34 -0.56 -0.04 16 10 C 0.29 3.05 15.23 -22.48 -0.34 2.71 16 11 N -0.41 -5.10 18.54 41.83 0.78 -4.33 16 12 N -0.40 -4.41 3.20 -116.93 -0.37 -4.78 16 13 C 0.06 0.61 10.48 59.85 0.63 1.24 16 14 N -0.27 -4.97 10.22 32.49 0.33 -4.64 16 15 N -0.31 -6.43 8.93 30.30 0.27 -6.15 16 16 C 0.40 7.72 6.65 -318.98 -2.12 5.60 16 17 N -0.46 -9.19 4.73 -176.10 -0.83 -10.02 16 18 C 0.03 0.51 8.58 60.07 0.52 1.02 16 19 C 0.23 5.59 2.07 -68.86 -0.14 5.44 16 20 H 0.05 1.37 8.11 -51.93 -0.42 0.95 16 21 C -0.18 -4.35 8.27 37.16 0.31 -4.05 16 22 C -0.52 -13.21 7.80 -34.44 -0.27 -13.48 16 23 H 0.06 1.59 6.82 -52.48 -0.36 1.24 16 24 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 25 N -0.88 -24.51 11.32 55.43 0.63 -23.88 16 26 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 28 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.11 0.82 7.51 -52.48 -0.39 0.43 16 31 H 0.11 0.68 8.06 -52.48 -0.42 0.26 16 32 H 0.12 1.04 7.85 -52.49 -0.41 0.62 16 33 H 0.11 0.87 5.96 -51.93 -0.31 0.56 16 34 H 0.11 1.19 7.76 -51.93 -0.40 0.79 16 35 H 0.16 1.12 4.77 -52.48 -0.25 0.87 16 36 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 39 H 0.11 1.36 6.39 -51.93 -0.33 1.03 16 40 H 0.03 0.58 6.83 -51.93 -0.35 0.22 16 41 H 0.10 1.76 6.28 -51.93 -0.33 1.44 16 42 H 0.06 0.79 4.20 -51.93 -0.22 0.57 16 43 H 0.02 0.49 6.62 -51.93 -0.34 0.15 16 44 H 0.05 1.24 5.39 -51.93 -0.28 0.96 16 45 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 46 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -30.68 373.72 -9.06 -39.74 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.53 Total: 2.22 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -4.61 Total: -1.78 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.47 Total: -61.08 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.68 -9.06 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340428145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.086 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 223.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 214.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds