Wall clock time and date at job start Tue Mar 31 2020 23:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00260 * 2 1 4 4 N 1.46494 * 109.47592 * 120.95259 * 3 2 1 5 5 C 1.37786 * 127.16466 * 86.32622 * 4 3 2 6 6 C 1.47045 * 126.50240 * 359.93008 * 5 4 3 7 7 C 1.38100 * 125.87846 * 352.85071 * 6 5 4 8 8 C 1.39282 * 107.66356 * 179.87278 * 7 6 5 9 9 C 1.38163 * 107.53530 * 0.38649 * 8 7 6 10 10 C 1.43200 * 125.97087 * 179.76038 * 9 8 7 11 11 N 7.97766 * 163.70408 * 216.29592 * 2 1 3 12 12 N 1.36862 * 125.87251 * 173.15557 * 6 5 4 13 13 C 1.46500 * 125.75377 * 359.94642 * 12 6 5 14 14 N 1.31561 * 106.99855 * 179.97438 * 5 4 3 15 15 N 1.28520 * 109.89148 * 359.97438 * 14 5 4 16 16 C 1.31506 * 110.12511 * 359.76219 * 15 14 5 17 17 N 1.38272 * 126.34262 * 180.26300 * 16 15 14 18 18 C 1.46903 * 110.99981 * 299.34814 * 17 16 15 19 19 C 1.46902 * 111.00139 * 63.30320 * 17 16 15 20 20 H 1.09004 * 109.46750 * 299.99941 * 19 17 16 21 21 C 1.52997 * 109.46766 * 59.99975 * 19 17 16 22 22 C 1.50699 * 109.46943 * 180.02562 * 19 17 16 23 23 H 1.07998 * 120.00585 * 0.02562 * 22 19 17 24 24 C 1.37876 * 119.99731 * 179.97438 * 22 19 17 25 25 N 1.31518 * 120.00319 * 0.02562 * 24 22 19 26 26 Si 1.86801 * 120.00022 * 179.97438 * 24 22 19 27 27 H 1.48498 * 109.47320 * 60.00357 * 26 24 22 28 28 H 1.48498 * 109.47047 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47394 * 300.00265 * 26 24 22 30 30 H 1.08002 * 120.00082 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99656 * 359.72952 * 1 2 3 32 32 H 1.08003 * 119.99638 * 179.97438 * 2 1 3 33 33 H 1.09006 * 109.47252 * 240.95658 * 3 2 1 34 34 H 1.09002 * 109.47140 * 0.95187 * 3 2 1 35 35 H 1.08003 * 126.16839 * 0.02562 * 7 6 5 36 36 H 1.08000 * 126.23170 * 180.12501 * 8 7 6 37 37 H 1.09007 * 109.47343 * 90.73780 * 13 12 6 38 38 H 1.09007 * 109.47510 * 210.73852 * 13 12 6 39 39 H 1.08999 * 109.47022 * 330.73918 * 13 12 6 40 40 H 1.09004 * 109.47034 * 55.36932 * 18 17 16 41 41 H 1.08997 * 109.47324 * 175.36256 * 18 17 16 42 42 H 1.08998 * 109.47221 * 295.36602 * 18 17 16 43 43 H 1.09006 * 109.46870 * 180.02562 * 21 19 17 44 44 H 1.08996 * 109.47553 * 300.00125 * 21 19 17 45 45 H 1.08994 * 109.47007 * 60.00631 * 21 19 17 46 46 H 0.97000 * 120.00327 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9230 1.3728 1.1844 5 6 4.2024 0.8779 1.3140 6 6 4.9759 0.1721 0.2817 7 6 4.4999 -0.2363 -0.9487 8 6 5.5475 -0.8610 -1.6210 9 6 6.6503 -0.8349 -0.7892 10 6 7.9423 -1.3754 -1.0881 11 7 8.9672 -1.8042 -1.3251 12 7 6.2899 -0.1984 0.3773 13 6 7.1658 0.0424 1.5267 14 7 4.6003 1.1559 2.5368 15 7 3.6711 1.7806 3.1676 16 6 2.6256 1.9449 2.3869 17 7 1.4430 2.5773 2.7234 18 6 0.7850 1.8994 3.8483 19 6 1.6723 3.9966 3.0252 20 1 2.3651 4.0826 3.8624 21 6 2.2671 4.6894 1.7976 22 6 0.3639 4.6509 3.3873 23 1 -0.5468 4.0704 3.3931 24 6 0.3297 5.9903 3.7123 25 7 1.4388 6.6972 3.7058 26 14 -1.2921 6.8016 4.1604 27 1 -1.8698 6.1287 5.3515 28 1 -1.0603 8.2363 4.4657 29 1 -2.2358 6.6850 3.0198 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9353 0.0044 32 1 1.8500 -0.9354 0.0004 33 1 2.6773 1.3702 -0.8985 34 1 1.3554 2.1335 0.0171 35 1 3.4968 -0.0943 -1.3232 36 1 5.5043 -1.2916 -2.6106 37 1 7.1095 -0.8049 2.2102 38 1 8.1928 0.1635 1.1819 39 1 6.8468 0.9477 2.0432 40 1 1.4759 1.8367 4.6891 41 1 -0.0989 2.4636 4.1458 42 1 0.4898 0.8950 3.5449 43 1 2.4377 5.7424 2.0218 44 1 3.2135 4.2160 1.5361 45 1 1.5743 4.6033 0.9606 46 1 1.4147 7.6396 3.9341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340428146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:49 Heat of formation + Delta-G solvation = 190.690486 kcal Electronic energy + Delta-G solvation = -29692.975178 eV Core-core repulsion = 25814.343207 eV Total energy + Delta-G solvation = -3878.631971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.97050 -42.18871 -38.80271 -37.63758 -37.17702 -34.91901 -34.06193 -33.66615 -32.29959 -31.26394 -29.52480 -28.09754 -27.56701 -27.35142 -26.09082 -24.70642 -23.50785 -22.32428 -21.66323 -21.03142 -20.52139 -19.36997 -18.51344 -18.09344 -17.52521 -17.11970 -16.89850 -16.49715 -16.29250 -15.94504 -15.44516 -15.33643 -14.95506 -14.73850 -14.55135 -14.39567 -14.20082 -14.18233 -13.99122 -13.69708 -13.58391 -13.28901 -13.22856 -13.03926 -12.99486 -12.81084 -12.65451 -12.53294 -12.40176 -12.24939 -12.14399 -12.05368 -11.65798 -11.12540 -11.07639 -10.62011 -10.53530 -10.43507 -9.90896 -9.54935 -8.93963 -8.12590 -6.26440 -0.18263 0.73590 0.79529 1.15875 1.40625 1.49114 1.49993 1.57523 1.65119 1.99442 2.07482 2.37323 2.44038 2.76352 2.94332 3.15611 3.21334 3.61188 3.76881 3.91736 4.00099 4.11385 4.24455 4.27308 4.36420 4.42914 4.57774 4.62572 4.64015 4.72115 4.79404 4.85676 4.90543 4.94258 4.98240 5.07751 5.08902 5.10560 5.38341 5.48823 5.62598 5.64758 5.69862 5.76813 5.79604 5.82306 5.89223 5.97373 6.15674 6.31652 6.60698 6.84028 7.42819 7.59976 8.94186 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.002966 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.606250 B = 9438.001518 C =10169.203728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.194 4.194 3 C 0.126 3.874 4 N -0.441 5.441 5 C 0.230 3.770 6 C 0.110 3.890 7 C -0.162 4.162 8 C -0.089 4.089 9 C 0.057 3.943 10 C 0.305 3.695 11 N -0.439 5.439 12 N -0.402 5.402 13 C 0.063 3.937 14 N -0.307 5.307 15 N -0.355 5.355 16 C 0.382 3.618 17 N -0.461 5.461 18 C 0.050 3.950 19 C 0.235 3.765 20 H -0.029 1.029 21 C -0.113 4.113 22 C -0.520 4.520 23 H 0.077 0.923 24 C 0.014 3.986 25 N -0.922 5.922 26 Si 0.966 3.034 27 H -0.269 1.269 28 H -0.291 1.291 29 H -0.265 1.265 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.178 0.822 36 H 0.193 0.807 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.016 0.984 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.066 0.934 44 H -0.001 1.001 45 H 0.045 0.955 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 -15.689 -12.687 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.213 4.213 3 C 0.005 3.995 4 N -0.133 5.133 5 C -0.036 4.036 6 C -0.010 4.010 7 C -0.189 4.189 8 C -0.116 4.116 9 C -0.058 4.058 10 C -0.009 4.009 11 N -0.117 5.117 12 N -0.076 5.076 13 C -0.078 4.078 14 N -0.150 5.150 15 N -0.200 5.200 16 C 0.025 3.975 17 N -0.188 5.188 18 C -0.097 4.097 19 C 0.129 3.871 20 H -0.011 1.011 21 C -0.171 4.171 22 C -0.558 4.558 23 H 0.095 0.905 24 C -0.185 4.185 25 N -0.561 5.561 26 Si 0.791 3.209 27 H -0.194 1.194 28 H -0.217 1.217 29 H -0.190 1.190 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.118 0.882 35 H 0.195 0.805 36 H 0.210 0.790 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.035 0.965 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.018 0.982 45 H 0.064 0.936 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.345 -16.017 -11.846 20.201 hybrid contribution -0.972 1.180 0.604 1.644 sum 2.373 -14.837 -11.242 18.766 Atomic orbital electron populations 1.24200 0.95483 1.03364 0.94533 1.22959 0.96557 0.96849 1.04885 1.21483 0.93834 0.99198 0.84936 1.46391 1.12515 1.41509 1.12853 1.21557 0.84669 1.02742 0.94587 1.17226 0.83654 1.05773 0.94330 1.21613 1.01661 1.04124 0.91463 1.21529 0.88564 1.01127 1.00406 1.15834 0.89867 1.10299 0.89815 1.24205 0.90816 0.92342 0.93573 1.81341 1.10833 1.11479 1.08056 1.43998 1.08599 1.41461 1.13570 1.22415 0.93881 1.04860 0.86656 1.74273 1.22669 1.15237 1.02821 1.74630 0.99683 1.18459 1.27204 1.22577 0.93662 0.97259 0.83992 1.59066 1.14884 1.04084 1.40752 1.22273 0.99120 0.98442 0.89872 1.19099 0.95796 0.79842 0.92320 1.01140 1.21579 0.95708 1.01988 0.97851 1.21288 0.93528 0.94691 1.46272 0.90526 1.25746 0.99817 0.97815 0.95133 1.70039 1.28609 1.08382 1.49052 0.85479 0.79457 0.76859 0.79066 1.19446 1.21665 1.18963 0.85921 0.88190 0.85495 0.85351 0.88151 0.80452 0.79011 0.89044 0.88439 0.89070 0.96484 0.88947 0.90700 0.91553 0.98178 0.93602 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 14.32 67.78 0.97 -1.18 16 2 C -0.19 -3.30 9.02 25.64 0.23 -3.07 16 3 C 0.13 2.74 5.81 85.63 0.50 3.23 16 4 N -0.44 -13.59 2.82 -521.34 -1.47 -15.06 16 5 C 0.23 7.08 7.80 135.82 1.06 8.14 16 6 C 0.11 2.50 6.86 40.64 0.28 2.78 16 7 C -0.16 -2.49 9.70 22.49 0.22 -2.27 16 8 C -0.09 -1.12 10.80 22.50 0.24 -0.87 16 9 C 0.06 0.99 6.75 39.45 0.27 1.25 16 10 C 0.31 5.84 15.20 88.33 1.34 7.18 16 11 N -0.44 -10.15 18.54 19.00 0.35 -9.80 16 12 N -0.40 -8.44 3.20 -523.87 -1.68 -10.12 16 13 C 0.06 1.25 10.45 127.77 1.33 2.59 16 14 N -0.31 -11.62 10.28 -51.12 -0.53 -12.15 16 15 N -0.36 -15.51 12.05 -58.05 -0.70 -16.21 16 16 C 0.38 15.02 5.02 260.15 1.31 16.33 16 17 N -0.46 -18.96 4.63 -711.07 -3.29 -22.25 16 18 C 0.05 1.88 9.34 127.69 1.19 3.08 16 19 C 0.24 11.68 2.01 44.17 0.09 11.77 16 20 H -0.03 -1.72 8.13 -2.39 -0.02 -1.74 16 21 C -0.11 -5.47 8.84 71.98 0.64 -4.83 16 22 C -0.52 -26.48 7.82 25.60 0.20 -26.28 16 23 H 0.08 3.69 6.44 -2.91 -0.02 3.67 16 24 C 0.01 0.74 5.30 84.65 0.45 1.19 16 25 N -0.92 -51.81 11.32 21.45 0.24 -51.57 16 26 Si 0.97 41.07 29.54 68.60 2.03 43.09 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 29 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 30 H 0.12 1.43 8.06 -2.91 -0.02 1.40 16 31 H 0.10 1.73 7.83 -2.91 -0.02 1.71 16 32 H 0.13 1.89 7.88 -2.91 -0.02 1.86 16 33 H 0.13 2.04 5.86 -2.38 -0.01 2.02 16 34 H 0.10 2.49 7.77 -2.39 -0.02 2.47 16 35 H 0.18 1.93 4.79 -2.91 -0.01 1.91 16 36 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.10 1.58 7.81 -2.38 -0.02 1.56 16 39 H 0.09 2.27 6.51 -2.39 -0.02 2.25 16 40 H 0.02 0.68 7.99 -2.38 -0.02 0.66 16 41 H 0.09 3.49 5.97 -2.39 -0.01 3.48 16 42 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.07 3.58 6.07 -2.38 -0.01 3.57 16 44 H 0.00 -0.04 7.22 -2.39 -0.02 -0.06 16 45 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -68.27 387.86 6.29 -61.98 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.02 Total: 13.04 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 10.32 Total: 19.04 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -7.07 Total: -137.15 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -68.27 6.29 -61.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340428146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.673 kcal (2) G-P(sol) polarization free energy of solvation -68.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds