Wall clock time and date at job start Tue Mar 31 2020 23:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.48118 * 2 1 4 4 C 1.53090 * 109.48410 * 239.98054 * 2 1 3 5 5 C 1.53176 * 109.16134 * 297.62688 * 4 2 1 6 6 N 1.46503 * 109.54556 * 183.15299 * 5 4 2 7 7 C 1.34778 * 120.00121 * 204.99862 * 6 5 4 8 8 O 1.21346 * 119.99909 * 0.02562 * 7 6 5 9 9 C 1.49451 * 119.99663 * 179.97438 * 7 6 5 10 10 O 1.21346 * 120.00673 * 0.02562 * 9 7 6 11 11 N 1.34778 * 119.99663 * 179.97438 * 9 7 6 12 12 C 1.47022 * 125.64931 * 359.69808 * 11 9 7 13 13 C 1.54338 * 107.26792 * 178.84827 * 12 11 9 14 14 C 1.55150 * 103.01856 * 338.13825 * 13 12 11 15 15 O 1.42903 * 111.03788 * 277.21812 * 14 13 12 16 16 C 1.50698 * 111.00536 * 153.38386 * 14 13 12 17 17 H 1.07998 * 119.99841 * 6.34281 * 16 14 13 18 18 C 1.37879 * 120.00298 * 186.34965 * 16 14 13 19 19 N 1.31522 * 119.99949 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00147 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47217 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47231 * 120.00210 * 20 18 16 23 23 H 1.48507 * 109.47091 * 239.99711 * 20 18 16 24 24 C 1.47431 * 125.64958 * 179.97438 * 11 9 7 25 25 C 1.53175 * 109.03666 * 303.01424 * 5 4 2 26 26 C 1.53092 * 109.16179 * 56.98460 * 25 5 4 27 27 H 1.08997 * 109.48550 * 62.37144 * 26 25 5 28 28 C 1.52997 * 109.48150 * 182.41023 * 26 25 5 29 29 O 1.42900 * 109.48386 * 120.03708 * 2 1 3 30 30 H 1.09000 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47342 * 300.01719 * 1 2 3 32 32 H 1.09003 * 109.47599 * 60.02351 * 1 2 3 33 33 H 1.09001 * 109.52724 * 177.72208 * 4 2 1 34 34 H 1.08998 * 109.57540 * 57.56369 * 4 2 1 35 35 H 1.08997 * 109.55040 * 62.88535 * 5 4 2 36 36 H 0.97006 * 120.00040 * 24.99407 * 6 5 4 37 37 H 1.09003 * 109.88146 * 298.39029 * 12 11 9 38 38 H 1.08996 * 109.88370 * 59.55273 * 12 11 9 39 39 H 1.08996 * 110.84512 * 219.66815 * 13 12 11 40 40 H 1.09001 * 110.66769 * 96.51708 * 13 12 11 41 41 H 0.96703 * 114.00026 * 173.67215 * 15 14 13 42 42 H 0.96997 * 120.00286 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.36080 * 322.93340 * 24 11 9 44 44 H 1.08995 * 110.36243 * 85.14872 * 24 11 9 45 45 H 1.09006 * 109.52647 * 176.88761 * 25 5 4 46 46 H 1.08998 * 109.52537 * 297.07653 * 25 5 4 47 47 H 1.09004 * 109.47313 * 179.97438 * 28 26 25 48 48 H 1.09001 * 109.47126 * 299.93724 * 28 26 25 49 49 H 1.08998 * 109.47277 * 59.94100 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7220 -1.2496 5 6 1.5757 -2.1811 -1.2125 6 7 2.1225 -2.8993 -2.3664 7 6 1.4943 -3.9944 -2.8381 8 8 0.4755 -4.3853 -2.3073 9 6 2.0519 -4.7266 -4.0156 10 8 3.0705 -4.3355 -4.5467 11 7 1.4240 -5.8221 -4.4870 12 6 0.1922 -6.4069 -3.9372 13 6 -0.1671 -7.6255 -4.8134 14 6 0.5737 -7.3298 -6.1441 15 8 -0.1896 -6.4495 -6.9715 16 6 0.9003 -8.6062 -6.8757 17 1 0.5286 -9.5505 -6.5064 18 6 1.6737 -8.5684 -8.0165 19 7 2.1261 -7.4183 -8.4665 20 14 2.0792 -10.1506 -8.9229 21 1 1.4557 -11.2989 -8.2174 22 1 1.5526 -10.0757 -10.3093 23 1 3.5522 -10.3350 -8.9622 24 6 1.8617 -6.6358 -5.6359 25 6 2.0765 -2.8322 0.0804 26 6 1.5645 -2.0287 1.2787 27 1 0.4750 -2.0552 1.2955 28 6 2.1099 -2.6376 2.5720 29 8 2.0065 -0.6743 1.1662 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5141 0.8898 32 1 -0.3634 0.5135 -0.8902 33 1 3.1298 -0.6872 -1.2710 34 1 1.6431 -0.2357 -2.1404 35 1 0.4867 -2.2178 -1.2411 36 1 2.9367 -2.5865 -2.7910 37 1 0.3599 -6.7244 -2.9080 38 1 -0.6145 -5.6749 -3.9747 39 1 -1.2435 -7.6828 -4.9755 40 1 0.2030 -8.5462 -4.3623 41 1 0.2735 -6.1593 -7.7693 42 1 2.6706 -7.3917 -9.2688 43 1 2.2816 -5.9984 -6.4140 44 1 2.5940 -7.3779 -5.3180 45 1 1.7037 -3.8547 0.1415 46 1 3.1664 -2.8400 0.0860 47 1 1.7456 -2.0651 3.4251 48 1 1.7726 -3.6706 2.6577 49 1 3.1994 -2.6114 2.5547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345868031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:26 Heat of formation + Delta-G solvation = -168.263930 kcal Electronic energy + Delta-G solvation = -30976.908745 eV Core-core repulsion = 26710.816921 eV Total energy + Delta-G solvation = -4266.091825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.80796 -39.89273 -38.38991 -37.19899 -35.54889 -34.22865 -33.70323 -32.27088 -32.04062 -30.24542 -29.32533 -27.92596 -27.05333 -25.98375 -24.33645 -23.10648 -22.52122 -21.38641 -20.16379 -19.71850 -19.24988 -17.48327 -17.16504 -16.83967 -16.58089 -16.24908 -15.84675 -15.39410 -15.15000 -15.08583 -14.59819 -14.50342 -14.24830 -13.96735 -13.84044 -13.20350 -13.07372 -12.99924 -12.93717 -12.83530 -12.43603 -12.30854 -12.27167 -12.05074 -11.72022 -11.65324 -11.53985 -11.40638 -11.25252 -11.11250 -11.08649 -10.81360 -10.59670 -10.48880 -10.46749 -10.22714 -9.89556 -9.40448 -9.25839 -9.13965 -8.72903 -8.42738 -7.92964 -6.31995 -4.41428 1.76291 2.58269 3.17714 3.26837 3.30369 3.41074 3.56632 3.83712 4.23512 4.25833 4.42756 4.51182 4.64201 4.69264 4.73550 4.93890 4.95695 4.97231 5.03735 5.14839 5.19951 5.38575 5.45405 5.46793 5.57004 5.60009 5.65246 5.75284 5.76833 5.77896 5.80775 5.87414 6.00603 6.03771 6.19610 6.32395 6.49338 6.70978 6.77189 6.82220 6.94400 7.14041 7.21819 7.29733 7.70143 7.84600 7.98394 8.02796 8.42077 8.63186 9.25844 9.34367 10.75250 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026576 B = 0.002337 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.342686 B =11975.970653 C =12118.927878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.094 3.906 3 H 0.108 0.892 4 C -0.159 4.159 5 C 0.143 3.857 6 N -0.704 5.704 7 C 0.512 3.488 8 O -0.517 6.517 9 C 0.507 3.493 10 O -0.538 6.538 11 N -0.574 5.574 12 C 0.112 3.888 13 C -0.121 4.121 14 C 0.248 3.752 15 O -0.581 6.581 16 C -0.536 4.536 17 H 0.069 0.931 18 C 0.070 3.930 19 N -0.894 5.894 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.092 3.908 25 C -0.162 4.162 26 C 0.087 3.913 27 H 0.065 0.935 28 C -0.144 4.144 29 O -0.374 6.374 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.412 0.588 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.381 0.619 42 H 0.270 0.730 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 12.613 17.278 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.036 3.964 3 H 0.125 0.875 4 C -0.198 4.198 5 C 0.038 3.962 6 N -0.357 5.357 7 C 0.293 3.707 8 O -0.391 6.391 9 C 0.289 3.711 10 O -0.417 6.417 11 N -0.306 5.306 12 C -0.011 4.011 13 C -0.159 4.159 14 C 0.208 3.792 15 O -0.389 6.389 16 C -0.574 4.574 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.532 5.532 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.029 4.029 25 C -0.200 4.200 26 C 0.028 3.972 27 H 0.082 0.918 28 C -0.201 4.201 29 O -0.293 6.293 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.248 0.752 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.231 0.769 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.144 12.644 17.860 21.912 hybrid contribution 0.998 -0.690 -1.465 1.902 sum -0.146 11.954 16.395 20.291 Atomic orbital electron populations 1.22513 0.96138 1.03158 1.03051 1.22090 0.93654 0.96382 0.84274 0.87466 1.22525 1.02732 0.94797 0.99706 1.21079 0.99783 0.90548 0.84754 1.45822 1.29626 1.28080 1.32177 1.20454 0.84222 0.81351 0.84628 1.90717 1.23457 1.65804 1.59165 1.19567 0.84923 0.81744 0.84895 1.90725 1.24337 1.66758 1.59897 1.48674 1.25629 1.24802 1.31459 1.22143 0.86162 0.96030 0.96764 1.22709 1.01400 0.96119 0.95712 1.19639 0.85011 0.87837 0.86746 1.86131 1.46341 1.67711 1.38764 1.21498 1.32710 0.93044 1.10139 0.91323 1.25098 0.94422 0.96985 0.96813 1.69719 1.35233 1.24632 1.23634 0.86330 0.78104 0.82867 0.79500 1.19551 1.20733 1.20784 1.23494 1.00417 0.93366 0.85627 1.22677 1.02427 1.00777 0.94164 1.22073 0.98365 0.81814 0.94900 0.91753 1.21756 1.02099 1.00491 0.95767 1.87989 1.73723 1.24637 1.42982 0.91653 0.91554 0.91169 0.90119 0.89830 0.88755 0.75212 0.91776 0.91189 0.90528 0.90363 0.76941 0.92017 0.89093 0.91424 0.90092 0.90576 0.91778 0.90953 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 8.65 37.15 0.32 -1.04 16 2 C 0.09 0.72 3.91 -26.69 -0.10 0.62 16 3 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.16 -1.30 5.11 -26.59 -0.14 -1.44 16 5 C 0.14 1.50 2.23 -67.75 -0.15 1.35 16 6 N -0.70 -9.06 5.08 -54.06 -0.27 -9.33 16 7 C 0.51 8.50 7.83 -11.58 -0.09 8.41 16 8 O -0.52 -9.11 13.79 5.50 0.08 -9.04 16 9 C 0.51 10.10 7.91 -11.58 -0.09 10.01 16 10 O -0.54 -11.70 16.73 5.50 0.09 -11.60 16 11 N -0.57 -12.07 3.33 -171.03 -0.57 -12.64 16 12 C 0.11 2.14 5.49 -3.06 -0.02 2.12 16 13 C -0.12 -2.46 6.13 -24.89 -0.15 -2.61 16 14 C 0.25 5.95 0.87 -89.64 -0.08 5.87 16 15 O -0.58 -14.67 13.16 -35.23 -0.46 -15.14 16 16 C -0.54 -13.72 8.27 -34.44 -0.28 -14.00 16 17 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 18 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 19 N -0.89 -23.37 10.69 55.43 0.59 -22.78 16 20 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.09 2.17 5.38 -2.54 -0.01 2.15 16 25 C -0.16 -1.62 5.00 -26.59 -0.13 -1.75 16 26 C 0.09 0.77 2.94 -26.69 -0.08 0.69 16 27 H 0.06 0.56 6.34 -51.93 -0.33 0.23 16 28 C -0.14 -1.10 9.56 37.16 0.36 -0.74 16 29 O -0.37 -3.55 10.24 -35.23 -0.36 -3.91 16 30 H 0.06 0.52 4.97 -51.93 -0.26 0.26 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.09 6.05 -51.93 -0.31 0.78 16 36 H 0.41 4.95 8.08 -40.82 -0.33 4.62 16 37 H 0.06 1.13 7.71 -51.93 -0.40 0.73 16 38 H 0.07 1.35 7.56 -51.93 -0.39 0.96 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 41 H 0.38 9.79 7.56 45.56 0.34 10.14 16 42 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 43 H 0.09 2.38 7.33 -51.93 -0.38 2.00 16 44 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -29.04 385.79 -7.95 -36.99 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -7.09 Total: 15.24 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -0.75 Total: 11.35 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.25 Total: -44.75 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -0.66 Total: -39.69 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.04 -7.95 -36.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345868031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.276 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds