Wall clock time and date at job start Tue Mar 31 2020 23:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99598 * 2 1 4 4 C 1.52998 * 112.90565 * 178.41591 * 3 2 1 5 5 H 1.08997 * 109.47394 * 196.25580 * 4 3 2 6 6 C 1.52999 * 109.47178 * 316.25354 * 4 3 2 7 7 N 1.46494 * 109.47167 * 76.25422 * 4 3 2 8 8 C 1.34782 * 120.00137 * 155.00213 * 7 4 3 9 9 O 1.21352 * 119.99764 * 359.97438 * 8 7 4 10 10 C 1.49448 * 119.99833 * 180.02562 * 8 7 4 11 11 O 1.21344 * 120.00538 * 359.97438 * 10 8 7 12 12 N 1.34775 * 119.99618 * 179.97438 * 10 8 7 13 13 C 1.47430 * 125.65355 * 359.69056 * 12 10 8 14 14 C 1.55123 * 104.72376 * 155.81646 * 13 12 10 15 15 C 1.55153 * 101.48974 * 37.30010 * 14 13 12 16 16 O 1.42900 * 110.72097 * 82.69020 * 15 14 13 17 17 C 1.50696 * 110.87761 * 205.89707 * 15 14 13 18 18 H 1.08005 * 120.00274 * 118.66406 * 17 15 14 19 19 C 1.37876 * 119.99908 * 298.67290 * 17 15 14 20 20 N 1.31510 * 120.00175 * 183.38423 * 19 17 15 21 21 Si 1.86801 * 119.99947 * 3.38365 * 19 17 15 22 22 H 1.48495 * 109.47257 * 84.83774 * 21 19 17 23 23 H 1.48500 * 109.47305 * 204.83833 * 21 19 17 24 24 H 1.48500 * 109.47172 * 324.83785 * 21 19 17 25 25 C 1.47024 * 125.64778 * 180.02562 * 12 10 8 26 26 C 1.53776 * 113.61917 * 309.67003 * 3 2 1 27 27 C 1.53785 * 87.08267 * 89.11640 * 26 3 2 28 28 C 1.53780 * 87.07876 * 25.43301 * 27 26 3 29 29 H 1.09005 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47022 * 299.99407 * 1 2 3 31 31 H 1.09000 * 109.47228 * 59.99767 * 1 2 3 32 32 H 1.08997 * 109.47296 * 59.99793 * 6 4 3 33 33 H 1.08995 * 109.47491 * 180.02562 * 6 4 3 34 34 H 1.09006 * 109.47266 * 300.00080 * 6 4 3 35 35 H 0.96999 * 120.00349 * 335.00066 * 7 4 3 36 36 H 1.08997 * 110.36666 * 274.75090 * 13 12 10 37 37 H 1.09004 * 110.36025 * 37.07000 * 13 12 10 38 38 H 1.09004 * 111.19607 * 279.19228 * 14 13 12 39 39 H 1.09004 * 110.90149 * 155.27939 * 14 13 12 40 40 H 0.96704 * 113.99825 * 185.03156 * 16 15 14 41 41 H 0.96995 * 120.00388 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.88359 * 300.43825 * 25 12 10 43 43 H 1.08996 * 109.88572 * 61.45058 * 25 12 10 44 44 H 1.09002 * 113.61047 * 334.56882 * 26 3 2 45 45 H 1.08998 * 113.69471 * 203.67826 * 26 3 2 46 46 H 1.09001 * 113.61433 * 139.98706 * 27 26 3 47 47 H 1.09003 * 113.60648 * 270.88300 * 27 26 3 48 48 H 1.09003 * 113.61210 * 89.11678 * 28 27 26 49 49 H 1.09001 * 113.61332 * 220.01697 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5394 1.2766 0.0390 5 1 3.9142 2.2592 0.3251 6 6 4.0040 0.2363 1.0602 7 7 4.0551 0.9242 -1.2862 8 6 5.2943 1.3085 -1.6512 9 8 5.9827 1.9469 -0.8823 10 6 5.8201 0.9495 -3.0033 11 8 5.1316 0.3115 -3.7723 12 7 7.0590 1.3343 -3.3684 13 6 7.9957 2.1149 -2.5396 14 6 9.4007 1.7636 -3.0953 15 6 9.1146 1.6614 -4.6168 16 8 9.1263 2.9561 -5.2215 17 6 10.1093 0.7515 -5.2903 18 1 9.7700 -0.1439 -5.7901 19 6 11.4525 1.0618 -5.2683 20 7 12.3131 0.3040 -5.9122 21 14 12.0499 2.5587 -4.3239 22 1 12.2525 2.1961 -2.8982 23 1 13.3343 3.0287 -4.9024 24 1 11.0380 3.6412 -4.4204 25 6 7.6979 1.0510 -4.6620 26 6 1.4391 2.2341 -1.0845 27 6 0.3739 2.6502 -0.0563 28 6 1.3856 2.2578 1.0334 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.6292 -0.7464 0.7741 33 1 5.0934 0.2160 1.0883 34 1 3.6203 0.4986 2.0462 35 1 3.5047 0.4142 -1.9009 36 1 7.7985 3.1815 -2.6467 37 1 7.9161 1.8166 -1.4942 38 1 9.7544 0.8116 -2.6994 39 1 10.1129 2.5614 -2.8843 40 1 8.8774 2.9559 -6.1560 41 1 13.2580 0.5225 -5.8971 42 1 7.7633 -0.0262 -4.8151 43 1 7.1213 1.5055 -5.4676 44 1 1.0317 1.7023 -1.9444 45 1 2.1124 3.0432 -1.3674 46 1 0.1423 3.7152 -0.0741 47 1 -0.5168 2.0220 -0.0719 48 1 2.0453 3.0731 1.3306 49 1 0.9350 1.7452 1.8833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345891564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:08 Heat of formation + Delta-G solvation = -108.593660 kcal Electronic energy + Delta-G solvation = -31132.287425 eV Core-core repulsion = 26868.783098 eV Total energy + Delta-G solvation = -4263.504328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29974 -40.34884 -38.69401 -37.50023 -35.75342 -35.14816 -34.42395 -32.43965 -31.10913 -30.36192 -28.47094 -27.87939 -26.45499 -25.99124 -25.08120 -23.75106 -22.35433 -21.22405 -20.55170 -19.97135 -19.57956 -17.86059 -17.47132 -16.96892 -16.56175 -16.35925 -15.83209 -15.66409 -15.41436 -15.08083 -14.68003 -14.56183 -14.40302 -13.98615 -13.72829 -13.51213 -13.31722 -13.06426 -13.01342 -12.80091 -12.66918 -12.57847 -12.49697 -12.39809 -12.18944 -11.84652 -11.60758 -11.38572 -11.26630 -11.23345 -10.92731 -10.92093 -10.56831 -10.52456 -10.30023 -10.08435 -9.86655 -9.31885 -9.22461 -9.02697 -8.75911 -8.53174 -8.29361 -6.22762 -4.35301 1.61540 2.42708 3.19182 3.30489 3.41541 3.42843 3.60303 3.63269 3.97460 4.10184 4.18966 4.35662 4.41388 4.53458 4.76284 4.91085 4.94428 5.06239 5.06666 5.10739 5.20679 5.21709 5.26102 5.27871 5.36270 5.45605 5.47641 5.51914 5.54266 5.67089 5.71367 5.79422 5.80202 5.98901 6.05230 6.12572 6.27157 6.40764 6.47329 6.60775 6.66677 6.78013 7.07566 7.15224 7.43792 7.67909 7.84012 8.17378 8.21270 8.71382 8.86893 9.39953 10.87433 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027396 B = 0.002466 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.787883 B =11349.512023 C =11533.164790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.353 6.353 3 C 0.086 3.914 4 C 0.169 3.831 5 H 0.104 0.896 6 C -0.160 4.160 7 N -0.697 5.697 8 C 0.513 3.487 9 O -0.516 6.516 10 C 0.511 3.489 11 O -0.536 6.536 12 N -0.575 5.575 13 C 0.099 3.901 14 C -0.130 4.130 15 C 0.216 3.784 16 O -0.572 6.572 17 C -0.552 4.552 18 H 0.079 0.921 19 C 0.090 3.910 20 N -0.886 5.886 21 Si 0.875 3.125 22 H -0.282 1.282 23 H -0.300 1.300 24 H -0.227 1.227 25 C 0.093 3.907 26 C -0.163 4.163 27 C -0.160 4.160 28 C -0.158 4.158 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.414 0.586 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.365 0.635 41 H 0.267 0.733 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.465 3.848 14.117 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.271 6.271 3 C 0.045 3.955 4 C 0.065 3.935 5 H 0.122 0.878 6 C -0.218 4.218 7 N -0.351 5.351 8 C 0.294 3.706 9 O -0.391 6.391 10 C 0.293 3.707 11 O -0.414 6.414 12 N -0.307 5.307 13 C -0.023 4.023 14 C -0.168 4.168 15 C 0.176 3.824 16 O -0.378 6.378 17 C -0.589 4.589 18 H 0.097 0.903 19 C -0.116 4.116 20 N -0.522 5.522 21 Si 0.703 3.297 22 H -0.208 1.208 23 H -0.228 1.228 24 H -0.150 1.150 25 C -0.029 4.029 26 C -0.201 4.201 27 C -0.197 4.197 28 C -0.196 4.196 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.251 0.749 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.212 0.788 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.111 0.889 48 H 0.114 0.886 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.923 3.926 14.835 27.586 hybrid contribution -0.173 0.401 -0.417 0.604 sum -23.096 4.327 14.418 27.569 Atomic orbital electron populations 1.23096 0.81256 1.02743 1.00431 1.87955 1.19724 1.25066 1.94388 1.22824 0.92212 0.83648 0.96779 1.20950 0.89167 1.00551 0.82871 0.87824 1.22069 1.01921 0.99668 0.98143 1.45770 1.15686 1.56265 1.17349 1.20258 0.82311 0.80060 0.87936 1.90713 1.56447 1.38369 1.53559 1.19602 0.81905 0.81712 0.87447 1.90731 1.57070 1.40172 1.53439 1.48441 1.13015 1.51119 1.18114 1.22753 0.88483 0.95493 0.95588 1.23203 0.94850 1.02473 0.96230 1.20009 0.89852 0.82018 0.90557 1.86519 1.91646 1.31692 1.27977 1.21158 0.90907 1.09466 1.37393 0.90282 1.24939 0.96498 0.96208 0.93936 1.69919 1.02988 1.38630 1.40645 0.87075 0.78075 0.85287 0.79289 1.20836 1.22757 1.15045 1.23011 0.94878 1.02029 0.82976 1.23542 0.98821 0.99991 0.97761 1.23321 0.97724 1.02468 0.96204 1.23540 0.98967 0.99532 0.97545 0.89618 0.93287 0.93145 0.91255 0.91855 0.91546 0.74929 0.91112 0.89004 0.89264 0.90485 0.78769 0.92287 0.90150 0.91756 0.90410 0.88717 0.90818 0.88852 0.88597 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.17 101.05 0.93 1.05 16 2 O -0.35 -3.12 9.72 -35.23 -0.34 -3.46 16 3 C 0.09 0.70 1.10 -89.81 -0.10 0.60 16 4 C 0.17 1.69 2.34 -67.93 -0.16 1.53 16 5 H 0.10 1.06 7.28 -51.93 -0.38 0.69 16 6 C -0.16 -1.59 9.18 37.16 0.34 -1.24 16 7 N -0.70 -8.48 4.70 -54.24 -0.25 -8.74 16 8 C 0.51 7.86 7.82 -11.58 -0.09 7.77 16 9 O -0.52 -8.50 13.44 5.49 0.07 -8.43 16 10 C 0.51 9.17 7.91 -11.59 -0.09 9.08 16 11 O -0.54 -10.40 16.80 5.50 0.09 -10.31 16 12 N -0.57 -10.92 3.32 -170.88 -0.57 -11.48 16 13 C 0.10 1.82 6.07 -2.41 -0.01 1.80 16 14 C -0.13 -2.70 4.83 -24.47 -0.12 -2.82 16 15 C 0.22 4.80 0.67 -89.94 -0.06 4.74 16 16 O -0.57 -12.30 10.44 -35.23 -0.37 -12.67 16 17 C -0.55 -14.58 8.82 -34.44 -0.30 -14.89 16 18 H 0.08 2.27 7.82 -52.48 -0.41 1.86 16 19 C 0.09 2.47 5.47 -17.82 -0.10 2.38 16 20 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 21 Si 0.88 21.10 23.89 -169.99 -4.06 17.04 16 22 H -0.28 -6.63 7.08 56.52 0.40 -6.23 16 23 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.23 -5.35 5.50 56.52 0.31 -5.04 16 25 C 0.09 1.89 6.21 -3.06 -0.02 1.87 16 26 C -0.16 -1.24 6.52 -25.92 -0.17 -1.41 16 27 C -0.16 -0.94 7.30 -25.92 -0.19 -1.13 16 28 C -0.16 -1.00 6.88 -25.92 -0.18 -1.18 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.24 5.89 -51.93 -0.31 -0.07 16 31 H 0.05 0.27 5.82 -51.93 -0.30 -0.03 16 32 H 0.07 0.72 7.55 -51.93 -0.39 0.33 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.41 4.95 8.06 -40.82 -0.33 4.62 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.61 6.14 -51.93 -0.32 1.29 16 38 H 0.09 1.88 8.05 -51.93 -0.42 1.46 16 39 H 0.08 1.63 5.00 -51.93 -0.26 1.37 16 40 H 0.37 6.78 9.08 45.56 0.41 7.19 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.08 1.72 7.66 -51.93 -0.40 1.33 16 43 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 44 H 0.08 0.61 7.57 -51.93 -0.39 0.22 16 45 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.46 4.83 -51.93 -0.25 0.21 16 48 H 0.10 0.57 7.90 -51.93 -0.41 0.16 16 49 H 0.08 0.45 7.38 -51.93 -0.38 0.07 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -31.53 377.45 -6.00 -37.53 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.71 Total: 12.00 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -0.32 Total: 8.15 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.05 Total: -45.54 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.54 Total: -34.87 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.06 Total: 17.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.53 -6.00 -37.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345891564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.064 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds