Wall clock time and date at job start Tue Mar 31 2020 23:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99598 * 2 1 4 4 C 1.52998 * 112.90565 * 178.41591 * 3 2 1 5 5 H 1.08997 * 109.47394 * 196.25580 * 4 3 2 6 6 C 1.52999 * 109.47178 * 316.25354 * 4 3 2 7 7 N 1.46494 * 109.47167 * 76.25422 * 4 3 2 8 8 C 1.34782 * 120.00137 * 155.00213 * 7 4 3 9 9 O 1.21352 * 119.99764 * 359.97438 * 8 7 4 10 10 C 1.49448 * 119.99833 * 180.02562 * 8 7 4 11 11 O 1.21344 * 120.00538 * 359.97438 * 10 8 7 12 12 N 1.34775 * 119.99618 * 179.97438 * 10 8 7 13 13 C 1.47430 * 125.65355 * 359.69056 * 12 10 8 14 14 C 1.55123 * 104.72376 * 155.81646 * 13 12 10 15 15 C 1.55153 * 101.48974 * 37.30010 * 14 13 12 16 16 O 1.42900 * 110.72097 * 82.69020 * 15 14 13 17 17 C 1.50696 * 110.87761 * 205.89707 * 15 14 13 18 18 H 1.08005 * 120.00274 * 118.66406 * 17 15 14 19 19 C 1.37876 * 119.99908 * 298.67290 * 17 15 14 20 20 N 1.31510 * 120.00175 * 183.38423 * 19 17 15 21 21 Si 1.86801 * 119.99947 * 3.38365 * 19 17 15 22 22 H 1.48495 * 109.47257 * 84.83774 * 21 19 17 23 23 H 1.48500 * 109.47305 * 204.83833 * 21 19 17 24 24 H 1.48500 * 109.47172 * 324.83785 * 21 19 17 25 25 C 1.47024 * 125.64778 * 180.02562 * 12 10 8 26 26 C 1.53776 * 113.61917 * 309.67003 * 3 2 1 27 27 C 1.53785 * 87.08267 * 89.11640 * 26 3 2 28 28 C 1.53780 * 87.07876 * 25.43301 * 27 26 3 29 29 H 1.09005 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47022 * 299.99407 * 1 2 3 31 31 H 1.09000 * 109.47228 * 59.99767 * 1 2 3 32 32 H 1.08997 * 109.47296 * 59.99793 * 6 4 3 33 33 H 1.08995 * 109.47491 * 180.02562 * 6 4 3 34 34 H 1.09006 * 109.47266 * 300.00080 * 6 4 3 35 35 H 0.96999 * 120.00349 * 335.00066 * 7 4 3 36 36 H 1.08997 * 110.36666 * 274.75090 * 13 12 10 37 37 H 1.09004 * 110.36025 * 37.07000 * 13 12 10 38 38 H 1.09004 * 111.19607 * 279.19228 * 14 13 12 39 39 H 1.09004 * 110.90149 * 155.27939 * 14 13 12 40 40 H 0.96704 * 113.99825 * 185.03156 * 16 15 14 41 41 H 0.96995 * 120.00388 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.88359 * 300.43825 * 25 12 10 43 43 H 1.08996 * 109.88572 * 61.45058 * 25 12 10 44 44 H 1.09002 * 113.61047 * 334.56882 * 26 3 2 45 45 H 1.08998 * 113.69471 * 203.67826 * 26 3 2 46 46 H 1.09001 * 113.61433 * 139.98706 * 27 26 3 47 47 H 1.09003 * 113.60648 * 270.88300 * 27 26 3 48 48 H 1.09003 * 113.61210 * 89.11678 * 28 27 26 49 49 H 1.09001 * 113.61332 * 220.01697 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5394 1.2766 0.0390 5 1 3.9142 2.2592 0.3251 6 6 4.0040 0.2363 1.0602 7 7 4.0551 0.9242 -1.2862 8 6 5.2943 1.3085 -1.6512 9 8 5.9827 1.9469 -0.8823 10 6 5.8201 0.9495 -3.0033 11 8 5.1316 0.3115 -3.7723 12 7 7.0590 1.3343 -3.3684 13 6 7.9957 2.1149 -2.5396 14 6 9.4007 1.7636 -3.0953 15 6 9.1146 1.6614 -4.6168 16 8 9.1263 2.9561 -5.2215 17 6 10.1093 0.7515 -5.2903 18 1 9.7700 -0.1439 -5.7901 19 6 11.4525 1.0618 -5.2683 20 7 12.3131 0.3040 -5.9122 21 14 12.0499 2.5587 -4.3239 22 1 12.2525 2.1961 -2.8982 23 1 13.3343 3.0287 -4.9024 24 1 11.0380 3.6412 -4.4204 25 6 7.6979 1.0510 -4.6620 26 6 1.4391 2.2341 -1.0845 27 6 0.3739 2.6502 -0.0563 28 6 1.3856 2.2578 1.0334 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.6292 -0.7464 0.7741 33 1 5.0934 0.2160 1.0883 34 1 3.6203 0.4986 2.0462 35 1 3.5047 0.4142 -1.9009 36 1 7.7985 3.1815 -2.6467 37 1 7.9161 1.8166 -1.4942 38 1 9.7544 0.8116 -2.6994 39 1 10.1129 2.5614 -2.8843 40 1 8.8774 2.9559 -6.1560 41 1 13.2580 0.5225 -5.8971 42 1 7.7633 -0.0262 -4.8151 43 1 7.1213 1.5055 -5.4676 44 1 1.0317 1.7023 -1.9444 45 1 2.1124 3.0432 -1.3674 46 1 0.1423 3.7152 -0.0741 47 1 -0.5168 2.0220 -0.0719 48 1 2.0453 3.0731 1.3306 49 1 0.9350 1.7452 1.8833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345891564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:07 Heat of formation + Delta-G solvation = -133.911906 kcal Electronic energy + Delta-G solvation = -31133.385307 eV Core-core repulsion = 26868.783098 eV Total energy + Delta-G solvation = -4264.602209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15586 -41.48110 -40.07764 -39.03894 -36.78729 -36.09040 -35.65096 -34.51820 -32.05188 -32.01531 -30.13519 -28.41939 -27.92087 -26.79914 -25.94853 -25.03408 -23.75334 -22.18246 -21.62169 -21.28936 -20.73869 -19.54656 -18.95372 -18.11985 -17.53266 -17.27218 -17.07048 -16.96628 -16.55060 -16.52027 -16.02704 -15.77641 -15.60598 -15.05503 -14.86277 -14.70113 -14.55795 -14.38186 -14.24905 -14.11872 -14.02946 -13.54751 -13.34241 -13.20363 -13.17693 -13.15638 -12.96916 -12.92509 -12.53424 -12.39354 -12.33829 -12.17667 -11.83332 -11.74359 -11.48731 -11.12298 -10.97435 -10.81817 -10.61802 -10.40247 -10.36804 -10.29278 -9.83642 -8.36712 -6.52437 0.28973 1.16898 1.39075 1.46680 1.68571 2.06717 2.37546 2.39791 2.64743 2.99087 3.18966 3.42842 3.51005 3.54217 3.58745 3.73717 3.84049 3.96403 4.15934 4.21995 4.29690 4.35025 4.39810 4.50585 4.52704 4.59354 4.70722 4.73754 4.75936 4.79715 4.82656 4.87697 4.88757 4.95109 4.96026 5.00533 5.04068 5.07623 5.23053 5.28774 5.34769 5.36625 5.48574 5.96226 6.05648 6.23714 6.26444 6.56665 6.59222 6.86958 7.12123 7.29176 8.77156 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027396 B = 0.002466 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.787883 B =11349.512023 C =11533.164790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.373 6.373 3 C 0.084 3.916 4 C 0.165 3.835 5 H 0.105 0.895 6 C -0.154 4.154 7 N -0.681 5.681 8 C 0.519 3.481 9 O -0.527 6.527 10 C 0.509 3.491 11 O -0.553 6.553 12 N -0.581 5.581 13 C 0.112 3.888 14 C -0.133 4.133 15 C 0.218 3.782 16 O -0.572 6.572 17 C -0.551 4.551 18 H 0.041 0.959 19 C 0.039 3.961 20 N -0.934 5.934 21 Si 0.934 3.066 22 H -0.270 1.270 23 H -0.307 1.307 24 H -0.213 1.213 25 C 0.100 3.900 26 C -0.168 4.168 27 C -0.152 4.152 28 C -0.152 4.152 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.416 0.584 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.378 0.622 41 H 0.269 0.731 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.602 5.605 16.291 30.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.292 6.292 3 C 0.043 3.957 4 C 0.062 3.938 5 H 0.123 0.877 6 C -0.212 4.212 7 N -0.333 5.333 8 C 0.300 3.700 9 O -0.404 6.404 10 C 0.292 3.708 11 O -0.433 6.433 12 N -0.313 5.313 13 C -0.010 4.010 14 C -0.170 4.170 15 C 0.177 3.823 16 O -0.379 6.379 17 C -0.588 4.588 18 H 0.059 0.941 19 C -0.162 4.162 20 N -0.573 5.573 21 Si 0.760 3.240 22 H -0.195 1.195 23 H -0.235 1.235 24 H -0.135 1.135 25 C -0.022 4.022 26 C -0.206 4.206 27 C -0.189 4.189 28 C -0.190 4.190 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.253 0.747 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.227 0.773 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.118 5.680 17.025 30.871 hybrid contribution 0.379 -0.258 -1.161 1.248 sum -24.739 5.422 15.864 29.885 Atomic orbital electron populations 1.23268 0.79852 1.03618 1.01331 1.87921 1.21309 1.25381 1.94598 1.22814 0.90769 0.83962 0.98111 1.21182 0.90747 1.00529 0.81386 0.87690 1.22015 1.00777 0.99299 0.99152 1.45792 1.14385 1.54953 1.18219 1.19729 0.83193 0.80479 0.86625 1.90705 1.56981 1.39317 1.53374 1.20139 0.81299 0.80904 0.88409 1.90718 1.57446 1.40777 1.54320 1.48448 1.13621 1.51650 1.17594 1.22685 0.86558 0.95896 0.95813 1.23165 0.96603 1.02313 0.94966 1.19802 0.89708 0.81587 0.91163 1.86461 1.91743 1.30546 1.29194 1.21378 0.91940 1.08841 1.36663 0.94082 1.25732 0.96717 0.98954 0.94783 1.70046 1.03398 1.40895 1.42913 0.86155 0.77314 0.82170 0.78408 1.19529 1.23546 1.13529 1.22718 0.94362 1.00769 0.84388 1.23554 0.99466 0.99656 0.97926 1.23315 0.97542 1.03158 0.94841 1.23538 0.98875 0.99036 0.97502 0.88909 0.91872 0.92672 0.91919 0.93506 0.89550 0.74732 0.90071 0.87799 0.90033 0.90160 0.77291 0.92247 0.92062 0.90802 0.90925 0.89481 0.90101 0.87714 0.88064 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.17 113.37 1.04 1.18 16 2 O -0.37 -5.87 9.72 -148.98 -1.45 -7.32 16 3 C 0.08 1.19 1.10 -10.27 -0.01 1.18 16 4 C 0.16 3.01 2.34 44.99 0.11 3.12 16 5 H 0.11 1.94 7.28 -2.39 -0.02 1.93 16 6 C -0.15 -2.82 9.18 71.98 0.66 -2.15 16 7 N -0.68 -15.72 4.70 -443.88 -2.09 -17.81 16 8 C 0.52 15.20 7.82 87.27 0.68 15.89 16 9 O -0.53 -16.42 13.44 -3.25 -0.04 -16.46 16 10 C 0.51 17.79 7.91 87.27 0.69 18.48 16 11 O -0.55 -21.21 16.80 -3.23 -0.05 -21.26 16 12 N -0.58 -21.45 3.32 -812.92 -2.70 -24.15 16 13 C 0.11 3.90 6.07 86.93 0.53 4.43 16 14 C -0.13 -5.33 4.83 32.06 0.15 -5.17 16 15 C 0.22 9.56 0.67 -10.35 -0.01 9.55 16 16 O -0.57 -23.52 10.44 -148.98 -1.56 -25.08 16 17 C -0.55 -29.68 8.82 25.60 0.23 -29.46 16 18 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 19 C 0.04 2.17 5.47 84.66 0.46 2.63 16 20 N -0.93 -56.48 13.96 21.45 0.30 -56.18 16 21 Si 0.93 43.25 23.89 68.60 1.64 44.89 16 22 H -0.27 -11.87 7.08 99.48 0.70 -11.17 16 23 H -0.31 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.21 -9.30 5.50 99.48 0.55 -8.75 16 25 C 0.10 4.06 6.21 86.73 0.54 4.60 16 26 C -0.17 -2.25 6.52 31.12 0.20 -2.04 16 27 C -0.15 -1.36 7.30 31.12 0.23 -1.13 16 28 C -0.15 -1.49 6.88 31.12 0.21 -1.27 16 29 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.06 0.43 5.89 -2.39 -0.01 0.41 16 31 H 0.05 0.48 5.82 -2.39 -0.01 0.46 16 32 H 0.06 1.23 7.55 -2.39 -0.02 1.21 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.42 9.52 8.06 -92.71 -0.75 8.77 16 36 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.10 3.41 6.14 -2.38 -0.01 3.40 16 38 H 0.08 3.38 8.05 -2.38 -0.02 3.36 16 39 H 0.08 3.18 5.00 -2.38 -0.01 3.17 16 40 H 0.38 13.44 9.08 -74.05 -0.67 12.77 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.06 2.70 7.66 -2.39 -0.02 2.68 16 43 H 0.07 2.82 8.06 -2.39 -0.02 2.80 16 44 H 0.07 1.03 7.57 -2.39 -0.02 1.01 16 45 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.10 0.71 4.83 -2.39 -0.01 0.70 16 48 H 0.10 0.90 7.90 -2.39 -0.02 0.89 16 49 H 0.09 0.72 7.38 -2.39 -0.02 0.70 16 Total: -1.00 -67.73 377.45 -0.82 -68.55 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.58 Total: 35.00 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 5.71 Total: 19.82 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -4.49 Total: -98.13 kcal Atomic # 8 Polarization: -67.02 SS G_CDS: -3.10 Total: -70.12 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.64 Total: 44.89 kcal Total: -67.73 -0.82 -68.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345891564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.359 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds