Wall clock time and date at job start Tue Mar 31 2020 23:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00069 * 2 1 4 4 C 1.53001 * 112.85045 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47371 * 168.80034 * 4 3 2 6 6 C 1.53002 * 109.47113 * 48.80315 * 4 3 2 7 7 N 1.46505 * 109.47104 * 288.80384 * 4 3 2 8 8 C 1.34775 * 119.99859 * 204.99558 * 7 4 3 9 9 O 1.21353 * 120.00198 * 0.02562 * 8 7 4 10 10 C 1.49452 * 119.99701 * 179.97438 * 8 7 4 11 11 O 1.21341 * 120.00018 * 0.02562 * 10 8 7 12 12 N 1.34775 * 119.99701 * 180.02562 * 10 8 7 13 13 C 1.47426 * 125.65132 * 0.05321 * 12 10 8 14 14 C 1.54912 * 104.83264 * 204.09079 * 13 12 10 15 15 C 1.55157 * 101.57717 * 322.98418 * 14 13 12 16 16 O 1.42897 * 110.87569 * 277.06718 * 15 14 13 17 17 C 1.50702 * 110.71748 * 153.86625 * 15 14 13 18 18 H 1.08002 * 120.00299 * 5.02888 * 17 15 14 19 19 C 1.37884 * 119.99942 * 184.74446 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.47024 * 125.64808 * 180.02562 * 12 10 8 26 26 C 1.53778 * 113.69139 * 311.26988 * 3 2 1 27 27 C 1.53779 * 87.08250 * 89.12528 * 26 3 2 28 28 C 1.53776 * 113.61596 * 48.80530 * 3 2 1 29 29 H 1.09006 * 109.46547 * 300.00012 * 1 2 3 30 30 H 1.09001 * 109.47075 * 59.99481 * 1 2 3 31 31 H 1.08994 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47255 * 299.99865 * 6 4 3 33 33 H 1.08998 * 109.47023 * 59.99806 * 6 4 3 34 34 H 1.09003 * 109.47211 * 180.02562 * 6 4 3 35 35 H 0.96999 * 119.99838 * 25.00188 * 7 4 3 36 36 H 1.09000 * 110.36142 * 322.92128 * 13 12 10 37 37 H 1.08998 * 110.36991 * 85.24632 * 13 12 10 38 38 H 1.08999 * 111.00250 * 204.91370 * 14 13 12 39 39 H 1.08996 * 111.00684 * 81.05892 * 14 13 12 40 40 H 0.96698 * 114.00670 * 177.45293 * 16 15 14 41 41 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.88361 * 59.56119 * 25 12 10 43 43 H 1.09003 * 109.88208 * 298.40016 * 25 12 10 44 44 H 1.09000 * 113.61614 * 203.67501 * 26 3 2 45 45 H 1.08998 * 113.61246 * 334.57826 * 26 3 2 46 46 H 1.08998 * 113.61682 * 270.88430 * 27 26 3 47 47 H 1.09002 * 113.61168 * 139.97825 * 27 26 3 48 48 H 1.09007 * 113.61603 * 25.34967 * 28 3 2 49 49 H 1.08999 * 113.61956 * 156.24933 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5399 1.2747 -0.0006 5 1 3.9234 2.2753 -0.2002 6 6 4.0303 0.3148 -1.0864 7 7 4.0198 0.8196 1.3066 8 6 5.2493 1.1706 1.7328 9 8 5.9587 1.8641 1.0339 10 6 5.7385 0.7068 3.0666 11 8 5.0290 0.0137 3.7656 12 7 6.9678 1.0583 3.4929 13 6 7.9290 1.8930 2.7495 14 6 9.3164 1.5000 3.3157 15 6 8.9897 1.2816 4.8167 16 8 8.9876 2.5237 5.5232 17 6 9.9659 0.3175 5.4400 18 1 10.8029 -0.0507 4.8653 19 6 9.7939 -0.0900 6.7460 20 7 8.7747 0.3584 7.4458 21 14 11.0082 -1.2790 7.5210 22 1 12.0576 -1.6304 6.5308 23 1 11.6388 -0.6411 8.7046 24 1 10.2941 -2.5104 7.9441 25 6 7.5720 0.6733 4.7768 26 6 1.4130 2.2477 -1.0584 27 6 0.3746 2.6521 0.0013 28 6 1.4131 2.2457 1.0602 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.6470 -0.6859 -0.8869 33 1 3.6733 0.6534 -2.0590 34 1 5.1201 0.2925 -1.0866 35 1 3.4527 0.2655 1.8654 36 1 7.8780 1.6720 1.6834 37 1 7.7317 2.9499 2.9286 38 1 10.0348 2.3093 3.1859 39 1 9.6793 0.5802 2.8570 40 1 8.7505 2.4446 6.4573 41 1 8.6534 0.0715 8.3645 42 1 7.6324 -0.4127 4.8472 43 1 6.9763 1.0676 5.6000 44 1 2.0810 3.0593 -1.3472 45 1 0.9835 1.7268 -1.9141 46 1 -0.5169 2.0250 0.0007 47 1 0.1440 3.7175 0.0023 48 1 0.9835 1.7232 1.9150 49 1 2.0810 3.0566 1.3507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345891565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:10 Heat of formation + Delta-G solvation = -144.904629 kcal Electronic energy + Delta-G solvation = -31136.839586 eV Core-core repulsion = 26871.760697 eV Total energy + Delta-G solvation = -4265.078889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.12016 -41.43011 -39.95015 -38.91950 -36.73454 -36.04346 -35.64421 -34.24161 -32.00994 -31.88548 -29.73432 -28.42550 -27.76915 -26.80678 -25.93670 -25.15462 -23.69363 -22.05561 -21.56145 -21.28841 -20.66155 -19.15473 -18.90460 -18.08516 -17.49950 -17.33729 -17.04983 -16.99843 -16.51969 -16.24003 -16.03287 -15.69646 -15.53836 -14.83161 -14.81649 -14.65571 -14.55123 -14.39492 -14.20279 -14.01128 -13.58232 -13.46597 -13.34570 -13.17941 -13.15481 -12.95207 -12.88766 -12.67344 -12.53470 -12.36594 -12.35204 -12.25073 -12.06495 -11.74393 -11.50382 -11.19149 -11.11917 -10.75840 -10.55589 -10.40006 -10.31148 -10.26584 -9.75091 -8.27799 -6.43585 0.31908 1.23049 1.41168 1.44394 1.55045 2.09515 2.35970 2.46839 2.64956 2.98631 3.24561 3.42870 3.52213 3.58839 3.78017 3.84075 4.03857 4.14184 4.16633 4.29171 4.35367 4.39935 4.50944 4.51965 4.60392 4.66535 4.73612 4.75596 4.79902 4.82416 4.88772 4.95296 4.96050 5.00535 5.07327 5.08338 5.10289 5.23943 5.29763 5.31243 5.34520 5.44450 5.72055 5.96238 6.05254 6.24765 6.35783 6.59357 6.66475 6.90090 7.26285 7.33863 8.78633 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.002474 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.080052 B =11313.011563 C =11623.466531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.374 6.374 3 C 0.084 3.916 4 C 0.164 3.836 5 H 0.105 0.895 6 C -0.154 4.154 7 N -0.682 5.682 8 C 0.522 3.478 9 O -0.526 6.526 10 C 0.500 3.500 11 O -0.562 6.562 12 N -0.584 5.584 13 C 0.109 3.891 14 C -0.115 4.115 15 C 0.234 3.766 16 O -0.587 6.587 17 C -0.556 4.556 18 H 0.068 0.932 19 C 0.026 3.974 20 N -0.915 5.915 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.283 1.283 25 C 0.118 3.882 26 C -0.149 4.149 27 C -0.151 4.151 28 C -0.171 4.171 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.415 0.585 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.377 0.623 41 H 0.271 0.729 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.005 3.154 -17.921 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.293 6.293 3 C 0.043 3.957 4 C 0.061 3.939 5 H 0.123 0.877 6 C -0.212 4.212 7 N -0.334 5.334 8 C 0.302 3.698 9 O -0.403 6.403 10 C 0.284 3.716 11 O -0.442 6.442 12 N -0.316 5.316 13 C -0.013 4.013 14 C -0.152 4.152 15 C 0.193 3.807 16 O -0.395 6.395 17 C -0.594 4.594 18 H 0.086 0.914 19 C -0.175 4.175 20 N -0.554 5.554 21 Si 0.790 3.210 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.209 1.209 25 C -0.004 4.004 26 C -0.187 4.187 27 C -0.187 4.187 28 C -0.209 4.209 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.251 0.749 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.121 0.879 45 H 0.107 0.893 46 H 0.123 0.877 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.744 3.330 -18.517 25.186 hybrid contribution -0.044 -1.043 2.016 2.270 sum -16.788 2.287 -16.500 23.650 Atomic orbital electron populations 1.23264 0.79835 1.03621 1.01320 1.87914 1.21351 1.25424 1.94600 1.22835 0.90746 0.83970 0.98132 1.21224 0.91102 0.99982 0.81595 0.87704 1.22028 1.00784 0.99857 0.98556 1.45799 1.14925 1.52085 1.20585 1.19695 0.83229 0.81001 0.85850 1.90681 1.55315 1.37515 1.56786 1.20303 0.81570 0.81836 0.87933 1.90701 1.55898 1.39544 1.58076 1.48740 1.14029 1.48565 1.20258 1.22652 0.87182 0.94261 0.97161 1.22826 0.96037 1.02548 0.93821 1.19709 0.88867 0.82218 0.89883 1.86106 1.92757 1.33319 1.27277 1.21833 1.11745 1.27500 0.98313 0.91383 1.25815 0.96827 0.97262 0.97568 1.69797 1.29807 1.45193 1.10584 0.85398 0.78937 0.78315 0.78338 1.18993 1.20318 1.20864 1.22747 0.96401 0.98879 0.82392 1.23515 0.98775 0.99035 0.97376 1.23307 0.97527 1.03185 0.94729 1.23581 0.99621 0.99667 0.98011 0.92879 0.91671 0.88898 0.91992 0.89270 0.93390 0.74861 0.87671 0.91238 0.88998 0.89648 0.77385 0.91971 0.93610 0.93858 0.87918 0.89315 0.87724 0.90011 0.91198 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.17 113.37 1.04 1.21 16 2 O -0.37 -6.60 9.88 -148.98 -1.47 -8.08 16 3 C 0.08 1.35 1.00 -10.27 -0.01 1.34 16 4 C 0.16 3.34 2.23 44.99 0.10 3.44 16 5 H 0.11 2.15 7.38 -2.39 -0.02 2.13 16 6 C -0.15 -2.99 9.24 71.98 0.67 -2.33 16 7 N -0.68 -18.00 4.82 -443.85 -2.14 -20.14 16 8 C 0.52 17.28 7.82 87.27 0.68 17.96 16 9 O -0.53 -17.88 13.44 -3.26 -0.04 -17.93 16 10 C 0.50 20.45 7.91 87.27 0.69 21.14 16 11 O -0.56 -25.51 16.80 -3.22 -0.05 -25.56 16 12 N -0.58 -25.23 3.33 -813.37 -2.71 -27.94 16 13 C 0.11 4.15 6.06 86.86 0.53 4.68 16 14 C -0.11 -4.64 6.23 31.99 0.20 -4.44 16 15 C 0.23 11.48 0.86 -10.35 -0.01 11.47 16 16 O -0.59 -29.94 13.09 -148.98 -1.95 -31.89 16 17 C -0.56 -29.17 8.12 25.60 0.21 -28.96 16 18 H 0.07 3.49 7.78 -2.91 -0.02 3.47 16 19 C 0.03 1.37 5.26 84.66 0.45 1.82 16 20 N -0.91 -49.25 10.95 21.45 0.23 -49.02 16 21 Si 0.96 41.91 29.54 68.60 2.03 43.93 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 25 C 0.12 5.91 5.25 86.73 0.46 6.37 16 26 C -0.15 -1.65 6.88 31.12 0.21 -1.43 16 27 C -0.15 -1.58 7.30 31.12 0.23 -1.36 16 28 C -0.17 -2.68 6.65 31.12 0.21 -2.48 16 29 H 0.05 0.57 5.86 -2.38 -0.01 0.56 16 30 H 0.06 0.53 5.86 -2.39 -0.01 0.51 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.29 7.61 -2.39 -0.02 1.27 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.41 11.12 8.07 -92.71 -0.75 10.37 16 36 H 0.11 3.66 6.16 -2.39 -0.01 3.65 16 37 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.08 3.30 8.04 -2.39 -0.02 3.28 16 40 H 0.38 19.85 7.41 -74.06 -0.55 19.30 16 41 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 42 H 0.05 2.48 7.81 -2.39 -0.02 2.47 16 43 H 0.04 2.36 7.94 -2.39 -0.02 2.34 16 44 H 0.10 1.01 7.96 -2.39 -0.02 1.00 16 45 H 0.09 0.82 7.48 -2.39 -0.02 0.80 16 46 H 0.10 0.86 4.83 -2.39 -0.01 0.85 16 47 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.07 1.19 7.48 -2.38 -0.02 1.17 16 49 H 0.09 1.49 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -62.77 386.08 -0.77 -63.54 By element: Atomic # 1 Polarization: 44.96 SS G_CDS: -0.31 Total: 44.66 kcal Atomic # 6 Polarization: 22.78 SS G_CDS: 5.64 Total: 28.42 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -4.61 Total: -97.09 kcal Atomic # 8 Polarization: -79.94 SS G_CDS: -3.52 Total: -83.46 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -62.77 -0.77 -63.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345891565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.365 kcal (2) G-P(sol) polarization free energy of solvation -62.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds