Wall clock time and date at job start Tue Mar 31 2020 23:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47306 * 2 1 4 4 C 1.37815 * 127.18628 * 86.90211 * 3 2 1 5 5 C 1.46970 * 126.51554 * 359.97438 * 4 3 2 6 6 N 1.32170 * 125.54976 * 359.73892 * 5 4 3 7 7 C 1.32862 * 109.86732 * 180.02562 * 6 5 4 8 8 C 1.38439 * 107.90126 * 359.97438 * 7 6 5 9 9 C 1.40781 * 133.55964 * 180.02562 * 8 7 6 10 10 C 1.36023 * 119.19624 * 180.09085 * 9 8 7 11 11 C 1.40716 * 119.76249 * 359.88588 * 10 9 8 12 12 C 1.34815 * 120.54259 * 0.08402 * 11 10 9 13 13 N 1.36630 * 125.54756 * 179.73792 * 5 4 3 14 14 N 1.31589 * 106.96446 * 179.73723 * 4 3 2 15 15 N 1.28500 * 109.91408 * 0.22599 * 14 4 3 16 16 C 1.31320 * 110.18311 * 0.02562 * 15 14 4 17 17 N 1.38468 * 126.34128 * 180.02562 * 16 15 14 18 18 C 1.46901 * 110.99752 * 306.51508 * 17 16 15 19 19 C 1.46900 * 111.00289 * 70.47232 * 17 16 15 20 20 H 1.09003 * 109.47150 * 54.99886 * 19 17 16 21 21 C 1.52997 * 109.46848 * 294.99825 * 19 17 16 22 22 C 1.50700 * 109.47086 * 174.99893 * 19 17 16 23 23 H 1.07992 * 119.99901 * 0.02562 * 22 19 17 24 24 C 1.37874 * 119.99944 * 179.97438 * 22 19 17 25 25 N 1.31518 * 120.00235 * 359.97438 * 24 22 19 26 26 Si 1.86804 * 120.00130 * 180.02562 * 24 22 19 27 27 H 1.48494 * 109.46768 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47198 * 119.99952 * 26 24 22 29 29 H 1.48501 * 109.46874 * 239.99889 * 26 24 22 30 30 H 1.09004 * 109.46769 * 175.85543 * 1 2 3 31 31 H 1.08995 * 109.46938 * 295.85199 * 1 2 3 32 32 H 1.08993 * 109.47030 * 55.85638 * 1 2 3 33 33 H 1.09001 * 109.46939 * 240.00409 * 2 1 3 34 34 H 1.09002 * 109.47559 * 120.00567 * 2 1 3 35 35 H 1.08003 * 126.04443 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.40296 * 0.02562 * 9 8 7 37 37 H 1.08003 * 120.12195 * 179.97438 * 10 9 8 38 38 H 1.07998 * 119.73205 * 180.02562 * 11 10 9 39 39 H 1.07999 * 119.72345 * 179.97438 * 12 11 10 40 40 H 1.08993 * 109.47298 * 54.11890 * 18 17 16 41 41 H 1.09004 * 109.46838 * 174.11819 * 18 17 16 42 42 H 1.08997 * 109.47298 * 294.11161 * 18 17 16 43 43 H 1.09003 * 109.47295 * 299.99972 * 21 19 17 44 44 H 1.09001 * 109.47530 * 60.00074 * 21 19 17 45 45 H 1.09002 * 109.47286 * 180.02562 * 21 19 17 46 46 H 0.96996 * 120.00417 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2401 2.1863 1.0963 5 6 2.0303 1.8230 2.5049 6 7 1.5869 0.6563 2.9397 7 6 1.5152 0.6665 4.2664 8 6 1.9368 1.9098 4.7058 9 6 2.0745 2.4932 5.9796 10 6 2.5263 3.7724 6.0782 11 6 2.8505 4.4905 4.9124 12 6 2.7155 3.9217 3.6976 13 7 2.2617 2.6364 3.5780 14 7 2.6804 3.3403 0.6425 15 7 2.7424 3.3111 -0.6407 16 6 2.3467 2.1411 -1.0869 17 7 2.2808 1.7481 -2.4130 18 6 1.4968 2.7037 -3.2069 19 6 3.6256 1.5729 -2.9777 20 1 4.1908 0.8747 -2.3602 21 6 4.3449 2.9228 -3.0101 22 6 3.5152 1.0288 -4.3787 23 1 2.5433 0.8331 -4.8069 24 6 4.6549 0.7817 -5.1141 25 7 5.8385 1.0214 -4.5931 26 14 4.5181 0.1079 -6.8510 27 1 3.0862 -0.0731 -7.2002 28 1 5.1435 1.0612 -7.8025 29 1 5.2158 -1.2005 -6.9307 30 1 -0.3633 -1.0250 -0.0743 31 1 -0.3633 0.4481 0.9248 32 1 -0.3633 0.5768 -0.8505 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.1868 -0.1508 4.8914 36 1 1.8234 1.9322 6.8677 37 1 2.6371 4.2348 7.0480 38 1 3.2096 5.5060 4.9913 39 1 2.9678 4.4852 2.8114 40 1 1.9026 3.7064 -3.0730 41 1 1.5478 2.4288 -4.2604 42 1 0.4584 2.6848 -2.8764 43 1 3.7797 3.6210 -3.6275 44 1 4.4248 3.3165 -1.9967 45 1 5.3426 2.7930 -3.4295 46 1 6.6404 0.8480 -5.1106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352564238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:16 Heat of formation + Delta-G solvation = 190.152577 kcal Electronic energy + Delta-G solvation = -29836.524628 eV Core-core repulsion = 25957.869331 eV Total energy + Delta-G solvation = -3878.655297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.00042 -42.30687 -37.68063 -37.23699 -35.29749 -33.69064 -32.87498 -31.26572 -30.37826 -30.09766 -28.72639 -27.64314 -25.43912 -25.21691 -24.15630 -23.93512 -23.19508 -22.24659 -21.34957 -20.54553 -19.39558 -17.77447 -16.95777 -16.56626 -16.48227 -16.15688 -15.90698 -15.59842 -15.35433 -14.90673 -14.68949 -14.52588 -14.14980 -13.64870 -13.61449 -13.19999 -12.76515 -12.54013 -12.36167 -12.25046 -12.16582 -11.92338 -11.51092 -11.32175 -11.24832 -11.08664 -11.02654 -10.94161 -10.80948 -10.61096 -10.54921 -10.24667 -10.17195 -10.01007 -9.80234 -9.61973 -8.92972 -8.84865 -8.47642 -7.79253 -7.38344 -6.09276 -4.15666 0.59776 0.74235 1.96365 2.04659 2.82373 2.84171 3.18730 3.26032 3.34130 3.37562 3.41598 3.82569 4.26895 4.32114 4.44305 4.57941 4.66877 4.71834 4.79545 5.02303 5.12269 5.23003 5.26206 5.45350 5.48388 5.52826 5.62833 5.68400 5.80209 5.85999 5.90537 5.95718 6.11438 6.22766 6.30321 6.33279 6.39700 6.44018 6.58714 6.78561 6.83928 6.97320 7.02892 7.12404 7.47496 7.59683 7.60712 7.72965 7.88565 8.22576 8.41817 8.87776 9.01829 9.49305 10.97536 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.002883 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.102919 B = 9710.964157 C =10260.956004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.109 3.891 3 N -0.443 5.443 4 C 0.228 3.772 5 C 0.242 3.758 6 N -0.428 5.428 7 C -0.011 4.011 8 C 0.010 3.990 9 C -0.081 4.081 10 C -0.116 4.116 11 C -0.142 4.142 12 C 0.071 3.929 13 N -0.341 5.341 14 N -0.282 5.282 15 N -0.306 5.306 16 C 0.393 3.607 17 N -0.469 5.469 18 C 0.045 3.955 19 C 0.223 3.777 20 H 0.037 0.963 21 C -0.173 4.173 22 C -0.507 4.507 23 H 0.068 0.932 24 C 0.062 3.938 25 N -0.888 5.888 26 Si 0.901 3.099 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.187 0.813 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.179 0.821 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.045 0.955 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.087 0.913 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 2.097 20.268 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.013 4.013 3 N -0.136 5.136 4 C -0.037 4.037 5 C -0.010 4.010 6 N -0.143 5.143 7 C -0.169 4.169 8 C -0.101 4.101 9 C -0.101 4.101 10 C -0.137 4.137 11 C -0.162 4.162 12 C -0.050 4.050 13 N -0.011 5.011 14 N -0.127 5.127 15 N -0.151 5.151 16 C 0.037 3.963 17 N -0.195 5.195 18 C -0.103 4.103 19 C 0.119 3.881 20 H 0.055 0.945 21 C -0.232 4.232 22 C -0.546 4.546 23 H 0.086 0.914 24 C -0.140 4.140 25 N -0.527 5.527 26 Si 0.729 3.271 27 H -0.196 1.196 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.204 0.796 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.196 0.804 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.105 0.895 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.818 2.356 19.442 21.478 hybrid contribution 0.265 -0.329 -0.376 0.565 sum -8.554 2.028 19.066 20.995 Atomic orbital electron populations 1.21991 0.94039 1.02901 1.02425 1.21956 0.95768 0.78143 1.05409 1.46345 1.48386 1.13911 1.04940 1.20232 1.08080 0.90096 0.85287 1.18690 1.11003 0.87012 0.84294 1.70105 1.15147 1.17295 1.11781 1.22575 1.08139 0.95867 0.90323 1.19817 1.08440 0.94602 0.87203 1.20490 0.99970 0.95444 0.94216 1.21123 0.99263 0.94353 0.98965 1.20918 1.02959 1.01583 0.90767 1.22135 0.98441 0.83215 1.01196 1.42589 1.40575 1.10688 1.07292 1.74281 1.17201 1.16617 1.04647 1.74704 1.20255 1.18426 1.01700 1.22868 0.97135 0.86579 0.89683 1.59404 1.20891 1.45446 0.93799 1.22263 0.94874 0.93941 0.99173 1.19445 0.79620 0.94065 0.94984 0.94525 1.22443 1.04088 0.97701 0.98972 1.21029 0.93164 1.43050 0.97322 0.91437 1.24916 0.95147 0.95460 0.98488 1.69917 0.97467 1.48040 1.37248 0.86396 0.78240 0.78542 0.83969 1.19615 1.21005 1.21020 0.90614 0.92244 0.92081 0.87780 0.87983 0.79609 0.83436 0.84478 0.83165 0.80422 0.94047 0.88874 0.93646 0.94838 0.94928 0.89453 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.11 1.71 6.44 -4.04 -0.03 1.68 16 3 N -0.44 -8.34 2.84 -114.79 -0.33 -8.66 16 4 C 0.23 4.25 7.91 -153.65 -1.22 3.04 16 5 C 0.24 3.91 7.82 -154.28 -1.21 2.70 16 6 N -0.43 -6.26 9.44 -10.64 -0.10 -6.36 16 7 C -0.01 -0.13 11.99 -17.03 -0.20 -0.33 16 8 C 0.01 0.11 6.80 -84.03 -0.57 -0.46 16 9 C -0.08 -0.65 10.11 -39.42 -0.40 -1.05 16 10 C -0.12 -0.84 10.07 -39.44 -0.40 -1.24 16 11 C -0.14 -1.20 9.98 -39.86 -0.40 -1.60 16 12 C 0.07 0.85 10.69 -16.54 -0.18 0.67 16 13 N -0.34 -4.71 2.98 -58.71 -0.18 -4.89 16 14 N -0.28 -5.66 10.93 32.48 0.35 -5.31 16 15 N -0.31 -6.71 9.67 30.34 0.29 -6.42 16 16 C 0.39 8.33 6.21 -318.67 -1.98 6.35 16 17 N -0.47 -10.24 4.77 -176.04 -0.84 -11.08 16 18 C 0.04 0.89 8.65 60.06 0.52 1.41 16 19 C 0.22 5.62 2.32 -68.87 -0.16 5.47 16 20 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 21 C -0.17 -4.37 8.20 37.16 0.30 -4.07 16 22 C -0.51 -13.34 7.80 -34.44 -0.27 -13.61 16 23 H 0.07 1.74 6.82 -52.49 -0.36 1.38 16 24 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 25 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 26 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 34 H 0.10 1.52 6.81 -51.93 -0.35 1.16 16 35 H 0.19 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.15 0.71 8.06 -52.48 -0.42 0.28 16 37 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 38 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.18 2.23 6.98 -52.49 -0.37 1.86 16 40 H 0.04 0.84 6.55 -51.93 -0.34 0.50 16 41 H 0.09 1.87 6.28 -51.93 -0.33 1.54 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.81 6.61 -51.93 -0.34 0.47 16 44 H 0.03 0.81 5.94 -51.93 -0.31 0.50 16 45 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 46 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -31.79 374.73 -11.50 -43.29 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.07 Total: 3.58 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -5.89 Total: -1.15 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -0.17 Total: -67.07 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.79 -11.50 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352564238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.446 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds