Wall clock time and date at job start Tue Mar 31 2020 23:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47306 * 2 1 4 4 C 1.37815 * 127.18628 * 86.90211 * 3 2 1 5 5 C 1.46970 * 126.51554 * 359.97438 * 4 3 2 6 6 N 1.32170 * 125.54976 * 359.73892 * 5 4 3 7 7 C 1.32862 * 109.86732 * 180.02562 * 6 5 4 8 8 C 1.38439 * 107.90126 * 359.97438 * 7 6 5 9 9 C 1.40781 * 133.55964 * 180.02562 * 8 7 6 10 10 C 1.36023 * 119.19624 * 180.09085 * 9 8 7 11 11 C 1.40716 * 119.76249 * 359.88588 * 10 9 8 12 12 C 1.34815 * 120.54259 * 0.08402 * 11 10 9 13 13 N 1.36630 * 125.54756 * 179.73792 * 5 4 3 14 14 N 1.31589 * 106.96446 * 179.73723 * 4 3 2 15 15 N 1.28500 * 109.91408 * 0.22599 * 14 4 3 16 16 C 1.31320 * 110.18311 * 0.02562 * 15 14 4 17 17 N 1.38468 * 126.34128 * 180.02562 * 16 15 14 18 18 C 1.46901 * 110.99752 * 306.51508 * 17 16 15 19 19 C 1.46900 * 111.00289 * 70.47232 * 17 16 15 20 20 H 1.09003 * 109.47150 * 54.99886 * 19 17 16 21 21 C 1.52997 * 109.46848 * 294.99825 * 19 17 16 22 22 C 1.50700 * 109.47086 * 174.99893 * 19 17 16 23 23 H 1.07992 * 119.99901 * 0.02562 * 22 19 17 24 24 C 1.37874 * 119.99944 * 179.97438 * 22 19 17 25 25 N 1.31518 * 120.00235 * 359.97438 * 24 22 19 26 26 Si 1.86804 * 120.00130 * 180.02562 * 24 22 19 27 27 H 1.48494 * 109.46768 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47198 * 119.99952 * 26 24 22 29 29 H 1.48501 * 109.46874 * 239.99889 * 26 24 22 30 30 H 1.09004 * 109.46769 * 175.85543 * 1 2 3 31 31 H 1.08995 * 109.46938 * 295.85199 * 1 2 3 32 32 H 1.08993 * 109.47030 * 55.85638 * 1 2 3 33 33 H 1.09001 * 109.46939 * 240.00409 * 2 1 3 34 34 H 1.09002 * 109.47559 * 120.00567 * 2 1 3 35 35 H 1.08003 * 126.04443 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.40296 * 0.02562 * 9 8 7 37 37 H 1.08003 * 120.12195 * 179.97438 * 10 9 8 38 38 H 1.07998 * 119.73205 * 180.02562 * 11 10 9 39 39 H 1.07999 * 119.72345 * 179.97438 * 12 11 10 40 40 H 1.08993 * 109.47298 * 54.11890 * 18 17 16 41 41 H 1.09004 * 109.46838 * 174.11819 * 18 17 16 42 42 H 1.08997 * 109.47298 * 294.11161 * 18 17 16 43 43 H 1.09003 * 109.47295 * 299.99972 * 21 19 17 44 44 H 1.09001 * 109.47530 * 60.00074 * 21 19 17 45 45 H 1.09002 * 109.47286 * 180.02562 * 21 19 17 46 46 H 0.96996 * 120.00417 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2401 2.1863 1.0963 5 6 2.0303 1.8230 2.5049 6 7 1.5869 0.6563 2.9397 7 6 1.5152 0.6665 4.2664 8 6 1.9368 1.9098 4.7058 9 6 2.0745 2.4932 5.9796 10 6 2.5263 3.7724 6.0782 11 6 2.8505 4.4905 4.9124 12 6 2.7155 3.9217 3.6976 13 7 2.2617 2.6364 3.5780 14 7 2.6804 3.3403 0.6425 15 7 2.7424 3.3111 -0.6407 16 6 2.3467 2.1411 -1.0869 17 7 2.2808 1.7481 -2.4130 18 6 1.4968 2.7037 -3.2069 19 6 3.6256 1.5729 -2.9777 20 1 4.1908 0.8747 -2.3602 21 6 4.3449 2.9228 -3.0101 22 6 3.5152 1.0288 -4.3787 23 1 2.5433 0.8331 -4.8069 24 6 4.6549 0.7817 -5.1141 25 7 5.8385 1.0214 -4.5931 26 14 4.5181 0.1079 -6.8510 27 1 3.0862 -0.0731 -7.2002 28 1 5.1435 1.0612 -7.8025 29 1 5.2158 -1.2005 -6.9307 30 1 -0.3633 -1.0250 -0.0743 31 1 -0.3633 0.4481 0.9248 32 1 -0.3633 0.5768 -0.8505 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.1868 -0.1508 4.8914 36 1 1.8234 1.9322 6.8677 37 1 2.6371 4.2348 7.0480 38 1 3.2096 5.5060 4.9913 39 1 2.9678 4.4852 2.8114 40 1 1.9026 3.7064 -3.0730 41 1 1.5478 2.4288 -4.2604 42 1 0.4584 2.6848 -2.8764 43 1 3.7797 3.6210 -3.6275 44 1 4.4248 3.3165 -1.9967 45 1 5.3426 2.7930 -3.4295 46 1 6.6404 0.8480 -5.1106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352564238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:15 Heat of formation + Delta-G solvation = 174.469513 kcal Electronic energy + Delta-G solvation = -29837.204697 eV Core-core repulsion = 25957.869331 eV Total energy + Delta-G solvation = -3879.335365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.15702 -43.56346 -39.06921 -38.46931 -36.66134 -34.92722 -34.47573 -32.30256 -31.61641 -31.46639 -30.51910 -28.76225 -27.29926 -27.06359 -25.35272 -24.87670 -24.26826 -23.42853 -22.84985 -21.79063 -21.01392 -18.88426 -18.41156 -17.92498 -17.73107 -17.46901 -17.14912 -16.80222 -16.73823 -16.34861 -15.87992 -15.59965 -15.38356 -15.20126 -14.89902 -14.61772 -14.26276 -14.07948 -13.56798 -13.29317 -13.19831 -13.17007 -13.07509 -12.90172 -12.75262 -12.69581 -12.57469 -12.36228 -12.35125 -12.10546 -12.06101 -11.82395 -11.78227 -11.43540 -11.23174 -10.94328 -10.70705 -10.55323 -10.10582 -9.54326 -8.37640 -8.15295 -6.29210 -0.27627 -0.13580 0.73917 0.89216 1.43655 1.44581 1.46870 1.58309 1.66174 2.15391 2.41133 2.47293 2.66355 3.01225 3.15287 3.46974 3.52714 3.76112 3.81864 3.96230 4.04554 4.07833 4.16963 4.25889 4.35724 4.41828 4.48571 4.60818 4.66346 4.68385 4.75675 4.78277 4.89695 4.97988 5.01900 5.06616 5.10361 5.13121 5.14744 5.26353 5.32463 5.48994 5.54548 5.59282 5.65642 5.76032 5.93677 5.95803 6.17549 6.54573 6.63521 6.80521 7.39939 7.49246 8.91899 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.002883 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.102919 B = 9710.964157 C =10260.956004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.108 3.892 3 N -0.446 5.446 4 C 0.250 3.750 5 C 0.173 3.827 6 N -0.435 5.435 7 C -0.015 4.015 8 C 0.012 3.988 9 C -0.076 4.076 10 C -0.107 4.107 11 C -0.111 4.111 12 C 0.020 3.980 13 N -0.338 5.338 14 N -0.309 5.309 15 N -0.331 5.331 16 C 0.368 3.632 17 N -0.465 5.465 18 C 0.050 3.950 19 C 0.234 3.766 20 H -0.004 1.004 21 C -0.154 4.154 22 C -0.515 4.515 23 H 0.074 0.926 24 C 0.013 3.987 25 N -0.922 5.922 26 Si 0.970 3.030 27 H -0.260 1.260 28 H -0.282 1.282 29 H -0.283 1.283 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.225 0.775 36 H 0.191 0.809 37 H 0.182 0.818 38 H 0.181 0.819 39 H 0.158 0.842 40 H 0.030 0.970 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.027 0.973 45 H 0.062 0.938 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.622 1.687 23.486 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.013 4.013 3 N -0.138 5.138 4 C -0.016 4.016 5 C -0.075 4.075 6 N -0.152 5.152 7 C -0.175 4.175 8 C -0.100 4.100 9 C -0.095 4.095 10 C -0.128 4.128 11 C -0.132 4.132 12 C -0.101 4.101 13 N -0.008 5.008 14 N -0.153 5.153 15 N -0.176 5.176 16 C 0.011 3.989 17 N -0.190 5.190 18 C -0.097 4.097 19 C 0.129 3.871 20 H 0.014 0.986 21 C -0.214 4.214 22 C -0.554 4.554 23 H 0.092 0.908 24 C -0.186 4.186 25 N -0.561 5.561 26 Si 0.795 3.205 27 H -0.183 1.183 28 H -0.208 1.208 29 H -0.209 1.209 30 H 0.123 0.877 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.241 0.759 36 H 0.208 0.792 37 H 0.199 0.801 38 H 0.199 0.801 39 H 0.175 0.825 40 H 0.049 0.951 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.367 1.970 22.622 24.962 hybrid contribution 0.743 -0.120 -0.911 1.182 sum -9.624 1.851 21.711 23.820 Atomic orbital electron populations 1.21903 0.91919 1.04479 1.01634 1.22133 0.97419 0.76700 1.05084 1.46512 1.48291 1.14671 1.04359 1.20758 1.05086 0.89198 0.86599 1.18347 1.16649 0.88845 0.83666 1.70004 1.14760 1.16854 1.13538 1.23310 1.07637 0.97064 0.89489 1.20548 1.07042 0.94498 0.87891 1.21104 0.98598 0.96024 0.93812 1.21691 0.97104 0.93917 1.00093 1.21463 0.99221 1.02623 0.89859 1.22236 1.02263 0.83363 1.02265 1.42700 1.39607 1.11101 1.07382 1.74213 1.19415 1.17916 1.03785 1.74549 1.20842 1.19302 1.02909 1.22759 0.99157 0.87225 0.89727 1.59262 1.19047 1.46301 0.94430 1.22263 0.95798 0.92845 0.98803 1.19098 0.81072 0.92716 0.94240 0.98600 1.22227 1.02666 0.98077 0.98390 1.21274 0.93495 1.42926 0.97676 0.90842 1.25774 0.94698 0.95634 1.02514 1.70063 0.98204 1.49006 1.38842 0.85324 0.78710 0.77616 0.78883 1.18342 1.20785 1.20865 0.87669 0.92566 0.93234 0.88940 0.87272 0.75893 0.79220 0.80073 0.80145 0.82506 0.95095 0.89078 0.91231 0.94485 0.95436 0.91933 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 10.24 71.98 0.74 -3.01 16 2 C 0.11 3.50 6.44 86.38 0.56 4.05 16 3 N -0.45 -17.75 2.84 -517.10 -1.47 -19.22 16 4 C 0.25 9.87 7.91 135.78 1.07 10.95 16 5 C 0.17 5.76 7.82 136.00 1.06 6.83 16 6 N -0.44 -12.61 9.44 -187.58 -1.77 -14.38 16 7 C -0.01 -0.31 11.99 84.59 1.01 0.70 16 8 C 0.01 0.24 6.80 38.84 0.26 0.50 16 9 C -0.08 -0.84 10.11 22.38 0.23 -0.62 16 10 C -0.11 -0.98 10.07 22.36 0.23 -0.76 16 11 C -0.11 -1.55 9.98 22.09 0.22 -1.33 16 12 C 0.02 0.47 10.69 83.13 0.89 1.36 16 13 N -0.34 -9.26 2.98 -339.67 -1.01 -10.28 16 14 N -0.31 -13.34 10.93 -51.14 -0.56 -13.90 16 15 N -0.33 -15.55 9.67 -57.92 -0.56 -16.11 16 16 C 0.37 16.56 6.21 260.04 1.61 18.18 16 17 N -0.46 -21.27 4.77 -710.87 -3.39 -24.66 16 18 C 0.05 2.04 8.65 127.69 1.10 3.14 16 19 C 0.23 12.46 2.32 44.17 0.10 12.56 16 20 H 0.00 -0.24 8.11 -2.39 -0.02 -0.26 16 21 C -0.15 -8.26 8.20 71.98 0.59 -7.67 16 22 C -0.52 -27.82 7.80 25.60 0.20 -27.62 16 23 H 0.07 3.81 6.82 -2.91 -0.02 3.79 16 24 C 0.01 0.70 5.30 84.65 0.45 1.15 16 25 N -0.92 -53.64 11.32 21.45 0.24 -53.40 16 26 Si 0.97 42.93 29.54 68.60 2.03 44.95 16 27 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 29 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 30 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.11 3.35 6.81 -2.39 -0.02 3.34 16 35 H 0.22 2.61 8.06 -2.91 -0.02 2.58 16 36 H 0.19 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 38 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.16 4.27 6.98 -2.91 -0.02 4.25 16 40 H 0.03 1.30 6.55 -2.39 -0.02 1.29 16 41 H 0.09 3.71 6.28 -2.38 -0.01 3.69 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 43 H 0.04 1.89 6.61 -2.39 -0.02 1.87 16 44 H 0.03 1.46 5.94 -2.39 -0.01 1.44 16 45 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 46 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -74.92 374.73 4.84 -70.08 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.01 Total: 18.49 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 10.33 Total: 18.42 kcal Atomic # 7 Polarization: -143.41 SS G_CDS: -8.52 Total: -151.93 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -74.92 4.84 -70.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352564238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.545 kcal (2) G-P(sol) polarization free energy of solvation -74.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds