Wall clock time and date at job start Tue Mar 31 2020 23:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47139 * 2 1 4 4 C 1.37806 * 127.19282 * 93.80575 * 3 2 1 5 5 C 1.46969 * 126.51729 * 0.04122 * 4 3 2 6 6 N 1.32172 * 125.54994 * 359.68652 * 5 4 3 7 7 C 1.32860 * 109.86995 * 180.02562 * 6 5 4 8 8 C 1.38447 * 107.89966 * 359.97438 * 7 6 5 9 9 C 1.40777 * 133.55445 * 179.97438 * 8 7 6 10 10 C 1.36028 * 119.19268 * 180.02562 * 9 8 7 11 11 C 1.40717 * 119.75913 * 0.02562 * 10 9 8 12 12 C 1.34810 * 120.54982 * 0.02562 * 11 10 9 13 13 N 1.36631 * 125.54963 * 179.71013 * 5 4 3 14 14 N 1.31596 * 106.96616 * 179.77378 * 4 3 2 15 15 N 1.28504 * 109.90997 * 0.23265 * 14 4 3 16 16 C 1.31316 * 110.18487 * 359.97438 * 15 14 4 17 17 N 1.38473 * 126.34439 * 180.02562 * 16 15 14 18 18 C 1.46898 * 110.99752 * 295.08981 * 17 16 15 19 19 C 1.46901 * 110.99886 * 59.03600 * 17 16 15 20 20 H 1.08997 * 109.47409 * 300.00427 * 19 17 16 21 21 C 1.53003 * 109.46813 * 60.00161 * 19 17 16 22 22 C 1.50693 * 109.47153 * 179.97438 * 19 17 16 23 23 H 1.08003 * 120.00142 * 0.02562 * 22 19 17 24 24 C 1.37873 * 120.00500 * 180.02562 * 22 19 17 25 25 N 1.31510 * 120.00567 * 180.02562 * 24 22 19 26 26 Si 1.86803 * 119.99737 * 0.02562 * 24 22 19 27 27 H 1.48504 * 109.47141 * 89.99857 * 26 24 22 28 28 H 1.48499 * 109.47466 * 209.99766 * 26 24 22 29 29 H 1.48499 * 109.47213 * 330.00018 * 26 24 22 30 30 H 1.09006 * 109.47190 * 55.10111 * 1 2 3 31 31 H 1.09006 * 109.47254 * 175.09862 * 1 2 3 32 32 H 1.08997 * 109.47387 * 295.09586 * 1 2 3 33 33 H 1.08991 * 109.47570 * 239.99436 * 2 1 3 34 34 H 1.09006 * 109.46572 * 119.99456 * 2 1 3 35 35 H 1.08001 * 126.05016 * 180.02562 * 7 6 5 36 36 H 1.07994 * 120.40783 * 0.02562 * 9 8 7 37 37 H 1.08004 * 120.12208 * 179.97438 * 10 9 8 38 38 H 1.08001 * 119.72319 * 179.97438 * 11 10 9 39 39 H 1.08001 * 119.72635 * 179.97438 * 12 11 10 40 40 H 1.08999 * 109.47729 * 66.49760 * 18 17 16 41 41 H 1.08997 * 109.47213 * 186.50307 * 18 17 16 42 42 H 1.09001 * 109.46959 * 306.49806 * 18 17 16 43 43 H 1.09003 * 109.47124 * 179.97438 * 21 19 17 44 44 H 1.08993 * 109.47412 * 300.00263 * 21 19 17 45 45 H 1.09010 * 109.46823 * 60.00200 * 21 19 17 46 46 H 0.97007 * 120.00094 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3647 2.1423 1.0954 5 6 2.3163 1.7221 2.5029 6 7 1.9230 0.5378 2.9382 7 6 2.0033 0.4944 4.2637 8 6 2.4752 1.7200 4.7018 9 6 2.7579 2.2521 5.9740 10 6 3.2224 3.5269 6.0718 11 6 3.4125 4.2923 4.9064 12 6 3.1376 3.7730 3.6931 13 7 2.6702 2.4924 3.5744 14 7 2.7525 3.3149 0.6411 15 7 2.6679 3.3372 -0.6410 16 6 2.2230 2.1847 -1.0859 17 7 2.0062 1.8448 -2.4107 18 6 0.9348 2.6623 -2.9953 19 6 3.2438 1.9612 -3.1934 20 1 3.6054 2.9886 -3.1508 21 6 4.3041 1.0230 -2.6134 22 6 2.9694 1.5837 -4.6262 23 1 1.9749 1.2873 -4.9256 24 6 3.9878 1.6166 -5.5550 25 7 3.7482 1.2876 -6.8056 26 14 5.7080 2.1285 -5.0371 27 1 6.4730 0.9301 -4.6081 28 1 6.3989 2.7727 -6.1829 29 1 5.6198 3.0896 -3.9085 30 1 -0.3634 0.5880 -0.8429 31 1 -0.3634 -1.0240 -0.0878 32 1 -0.3634 0.4358 0.9306 33 1 1.8933 -0.5139 -0.8898 34 1 1.8932 -0.5138 0.8901 35 1 1.7467 -0.3482 4.8887 36 1 2.6078 1.6557 6.8617 37 1 3.4438 3.9504 7.0404 38 1 3.7810 5.3045 4.9847 39 1 3.2880 4.3724 2.8074 40 1 1.2598 3.7012 -3.0512 41 1 0.7058 2.2988 -3.9970 42 1 0.0437 2.5935 -2.3713 43 1 5.2224 1.1090 -3.1944 44 1 4.5027 1.2955 -1.5769 45 1 3.9425 -0.0045 -2.6560 46 1 4.4649 1.3104 -7.4590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352564276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:19 Heat of formation + Delta-G solvation = 195.104576 kcal Electronic energy + Delta-G solvation = -29950.141961 eV Core-core repulsion = 26071.701399 eV Total energy + Delta-G solvation = -3878.440562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.09784 -42.43719 -37.75553 -37.30495 -35.39554 -33.77096 -32.86567 -31.37085 -30.58059 -30.43663 -29.87970 -27.80710 -25.69989 -24.58766 -24.20807 -24.00665 -23.36029 -22.28639 -21.74606 -20.55716 -19.52046 -17.81670 -17.08840 -17.02964 -16.60666 -16.34795 -15.97957 -15.79858 -15.32492 -14.97700 -14.83351 -14.68043 -14.22522 -13.85972 -13.63836 -13.35521 -13.02493 -12.66466 -12.60799 -12.38028 -12.25248 -12.20580 -11.99603 -11.82605 -11.35769 -11.26014 -11.12621 -11.08631 -10.79219 -10.78162 -10.63397 -10.35019 -10.18827 -9.97276 -9.74319 -9.61563 -9.28170 -8.96590 -8.65570 -7.99013 -7.49982 -6.16345 -4.17203 0.52428 0.65249 1.84838 1.94268 2.70397 2.71516 3.11253 3.23005 3.29646 3.35531 3.38535 3.71295 4.19406 4.33225 4.34543 4.36509 4.54962 4.64372 4.72362 4.92361 5.03900 5.15824 5.16851 5.37299 5.39390 5.40771 5.49054 5.59193 5.71243 5.74116 5.80307 5.88384 5.98615 6.15218 6.18415 6.21612 6.23992 6.28922 6.31024 6.31876 6.41120 6.62804 6.70857 6.76883 6.89274 7.07103 7.38858 7.50479 7.60462 7.89468 8.47620 8.85646 8.87488 9.43768 10.95435 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.003155 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.530797 B = 8872.097107 C = 9552.683357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.106 3.894 3 N -0.442 5.442 4 C 0.233 3.767 5 C 0.239 3.761 6 N -0.428 5.428 7 C -0.010 4.010 8 C 0.011 3.989 9 C -0.081 4.081 10 C -0.115 4.115 11 C -0.140 4.140 12 C 0.070 3.930 13 N -0.340 5.340 14 N -0.280 5.280 15 N -0.311 5.311 16 C 0.391 3.609 17 N -0.460 5.460 18 C 0.050 3.950 19 C 0.195 3.805 20 H 0.022 0.978 21 C -0.146 4.146 22 C -0.513 4.513 23 H 0.088 0.912 24 C 0.078 3.922 25 N -0.893 5.893 26 Si 0.879 3.121 27 H -0.278 1.278 28 H -0.293 1.293 29 H -0.265 1.265 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.188 0.812 36 H 0.149 0.851 37 H 0.138 0.862 38 H 0.151 0.849 39 H 0.179 0.821 40 H 0.038 0.962 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.021 0.979 45 H 0.060 0.940 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 0.502 25.867 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.016 4.016 3 N -0.134 5.134 4 C -0.033 4.033 5 C -0.013 4.013 6 N -0.143 5.143 7 C -0.168 4.168 8 C -0.099 4.099 9 C -0.101 4.101 10 C -0.136 4.136 11 C -0.161 4.161 12 C -0.051 4.051 13 N -0.011 5.011 14 N -0.125 5.125 15 N -0.156 5.156 16 C 0.035 3.965 17 N -0.187 5.187 18 C -0.097 4.097 19 C 0.089 3.911 20 H 0.040 0.960 21 C -0.204 4.204 22 C -0.551 4.551 23 H 0.106 0.894 24 C -0.125 4.125 25 N -0.530 5.530 26 Si 0.709 3.291 27 H -0.205 1.205 28 H -0.221 1.221 29 H -0.190 1.190 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.205 0.795 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.196 0.804 40 H 0.056 0.944 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.954 0.763 24.893 25.217 hybrid contribution 1.138 0.249 0.704 1.361 sum -2.816 1.012 25.598 25.772 Atomic orbital electron populations 1.22013 0.93912 1.03128 1.02482 1.22032 0.95934 0.78047 1.05599 1.46389 1.48182 1.13895 1.04935 1.20271 1.07145 0.90515 0.85368 1.18657 1.10798 0.87576 0.84299 1.70070 1.16486 1.15950 1.11821 1.22586 1.07516 0.96415 0.90310 1.19828 1.08828 0.94009 0.87236 1.20502 0.99414 0.95938 0.94247 1.21139 0.99419 0.94073 0.99000 1.20931 1.02716 1.01646 0.90785 1.22133 0.98151 0.83625 1.01210 1.42588 1.40409 1.10721 1.07362 1.74297 1.18455 1.15464 1.04313 1.74642 1.19993 1.18918 1.02086 1.22777 0.98125 0.85934 0.89661 1.58997 1.11602 1.54050 0.94033 1.22268 0.91009 0.95472 1.00908 1.19860 0.83208 0.95220 0.92773 0.96048 1.22188 0.99253 1.01470 0.97450 1.20835 0.98616 1.46557 0.89054 0.89434 1.24814 0.98499 0.94419 0.94746 1.69850 1.33193 1.47846 1.02121 0.86982 0.85160 0.79145 0.77854 1.20458 1.22080 1.18972 0.91771 0.90451 0.92422 0.87981 0.87411 0.79530 0.83362 0.84407 0.83115 0.80430 0.94362 0.88383 0.93419 0.93172 0.95987 0.92090 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.11 1.54 6.61 -4.05 -0.03 1.51 16 3 N -0.44 -7.81 2.84 -114.80 -0.33 -8.13 16 4 C 0.23 4.11 7.91 -153.66 -1.22 2.90 16 5 C 0.24 3.66 7.81 -154.28 -1.21 2.45 16 6 N -0.43 -5.93 9.27 -10.64 -0.10 -6.02 16 7 C -0.01 -0.11 11.99 -17.03 -0.20 -0.31 16 8 C 0.01 0.12 6.80 -84.03 -0.57 -0.45 16 9 C -0.08 -0.61 10.11 -39.42 -0.40 -1.00 16 10 C -0.12 -0.77 10.07 -39.44 -0.40 -1.17 16 11 C -0.14 -1.11 9.97 -39.86 -0.40 -1.51 16 12 C 0.07 0.79 10.69 -16.54 -0.18 0.61 16 13 N -0.34 -4.47 2.98 -58.71 -0.18 -4.64 16 14 N -0.28 -5.40 10.93 32.48 0.35 -5.05 16 15 N -0.31 -6.65 12.10 30.34 0.37 -6.29 16 16 C 0.39 7.89 5.02 -318.66 -1.60 6.29 16 17 N -0.46 -9.68 4.65 -176.04 -0.82 -10.50 16 18 C 0.05 0.97 9.13 60.06 0.55 1.52 16 19 C 0.20 4.69 1.58 -68.87 -0.11 4.58 16 20 H 0.02 0.57 7.13 -51.93 -0.37 0.20 16 21 C -0.15 -3.35 8.54 37.16 0.32 -3.03 16 22 C -0.51 -13.79 8.53 -34.45 -0.29 -14.08 16 23 H 0.09 2.49 6.64 -52.48 -0.35 2.14 16 24 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 25 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 26 Si 0.88 21.88 24.37 -169.99 -4.14 17.73 16 27 H -0.28 -6.74 6.87 56.52 0.39 -6.35 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.26 -6.57 6.53 56.52 0.37 -6.20 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.11 1.48 6.43 -51.93 -0.33 1.14 16 35 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 38 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.18 2.11 6.98 -52.49 -0.37 1.75 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.10 1.95 6.33 -51.93 -0.33 1.62 16 42 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 43 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 44 H 0.02 0.48 7.22 -51.93 -0.38 0.10 16 45 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -33.02 373.56 -10.00 -43.02 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.12 Total: 1.04 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -5.45 Total: -1.19 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: 0.08 Total: -66.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.02 -10.00 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352564276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.127 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds