Wall clock time and date at job start Tue Mar 31 2020 23:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46738 * 2 1 4 4 O 1.42901 * 109.47363 * 240.00233 * 2 1 3 5 5 C 1.53000 * 109.47294 * 120.00076 * 2 1 3 6 6 H 1.08992 * 109.46878 * 60.00644 * 5 2 1 7 7 N 1.46499 * 109.47080 * 299.99909 * 5 2 1 8 8 C 1.34775 * 119.99299 * 85.00358 * 7 5 2 9 9 O 1.21276 * 120.00699 * 359.97438 * 8 7 5 10 10 C 1.50709 * 119.99599 * 179.97438 * 8 7 5 11 11 C 1.55238 * 110.58096 * 294.87565 * 10 8 7 12 12 C 1.54894 * 102.58338 * 203.33573 * 11 10 8 13 13 C 1.54266 * 104.31305 * 37.93170 * 12 11 10 14 14 C 1.53869 * 106.60031 * 336.32486 * 13 12 11 15 15 C 1.50705 * 109.46744 * 180.02562 * 5 2 1 16 16 O 1.21283 * 119.99988 * 120.00720 * 15 5 2 17 17 N 1.34773 * 120.00202 * 299.99745 * 15 5 2 18 18 C 1.47067 * 136.05729 * 359.63326 * 17 15 5 19 19 C 1.53233 * 88.08464 * 207.19973 * 18 17 15 20 20 O 1.42905 * 114.19488 * 87.72909 * 19 18 17 21 21 C 1.50693 * 114.32960 * 220.46845 * 19 18 17 22 22 H 1.08001 * 120.00164 * 93.75849 * 21 19 18 23 23 C 1.37880 * 120.00376 * 273.76232 * 21 19 18 24 24 N 1.31516 * 119.99575 * 359.97438 * 23 21 19 25 25 Si 1.86797 * 120.00249 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47226 * 90.00004 * 25 23 21 27 27 H 1.48509 * 109.47191 * 210.00043 * 25 23 21 28 28 H 1.48501 * 109.46895 * 329.99820 * 25 23 21 29 29 C 1.47070 * 136.05877 * 180.02562 * 17 15 5 30 30 H 1.09000 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.08992 * 109.47482 * 60.00204 * 1 2 3 32 32 H 1.09006 * 109.46738 * 180.02562 * 1 2 3 33 33 H 0.96695 * 114.00059 * 300.00391 * 4 2 1 34 34 H 0.96998 * 120.00025 * 264.99975 * 7 5 2 35 35 H 1.09006 * 110.43428 * 57.45967 * 10 8 7 36 36 H 1.08996 * 110.89448 * 85.05138 * 11 10 8 37 37 H 1.08993 * 110.76342 * 321.56803 * 11 10 8 38 38 H 1.09002 * 110.48891 * 279.18596 * 12 11 10 39 39 H 1.08998 * 110.48494 * 156.67683 * 12 11 10 40 40 H 1.09001 * 110.03084 * 95.60669 * 13 12 11 41 41 H 1.08996 * 110.03108 * 216.98559 * 13 12 11 42 42 H 1.08999 * 110.04012 * 119.28327 * 14 13 12 43 43 H 1.09006 * 110.02998 * 240.67078 * 14 13 12 44 44 H 1.08999 * 113.46979 * 321.94078 * 18 17 15 45 45 H 1.09006 * 113.46735 * 92.37341 * 18 17 15 46 46 H 0.96700 * 113.99987 * 86.29836 * 20 19 18 47 47 H 0.97002 * 119.99779 * 180.02562 * 24 23 21 48 48 H 1.08996 * 113.46510 * 267.62574 * 29 17 15 49 49 H 1.09001 * 113.46433 * 38.00623 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.6768 -1.7489 1.2491 7 7 1.5517 -0.0307 2.4454 8 6 0.3298 -0.3167 2.9368 9 8 -0.3657 -1.1453 2.3887 10 6 -0.1724 0.3933 4.1677 11 6 0.6936 0.0241 5.4021 12 6 -0.2668 0.3054 6.5844 13 6 -1.6472 -0.1552 6.0723 14 6 -1.5871 -0.0994 4.5358 15 6 3.5471 -0.7206 1.2494 16 8 4.1532 -0.1955 2.1593 17 7 4.2214 -1.3038 0.2387 18 6 3.8675 -2.0231 -0.9943 19 6 5.2060 -2.7613 -0.8867 20 8 5.1574 -3.9497 -0.0945 21 6 5.9181 -2.9505 -2.2012 22 1 6.6584 -2.2328 -2.5226 23 6 5.6246 -4.0398 -2.9939 24 7 4.7234 -4.9140 -2.6024 25 14 6.5078 -4.2747 -4.6230 26 1 7.7389 -5.0766 -4.4075 27 1 5.6141 -4.9853 -5.5727 28 1 6.8724 -2.9489 -5.1840 29 6 5.6348 -1.5070 -0.1132 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7210 -1.5951 -1.2330 34 1 2.1079 0.6323 2.8836 35 1 -0.1728 1.4721 4.0113 36 1 1.5765 0.6604 5.4619 37 1 0.9755 -1.0284 5.3754 38 1 -0.2825 1.3700 6.8182 39 1 0.0273 -0.2723 7.4606 40 1 -1.8462 -1.1751 6.4013 41 1 -2.4245 0.5140 6.4409 42 1 -1.7569 -1.0921 4.1190 43 1 -2.3358 0.5970 4.1579 44 1 3.0026 -2.6769 -0.8825 45 1 3.7974 -1.3766 -1.8692 46 1 4.8869 -4.7382 -0.5845 47 1 4.5171 -5.6806 -3.1599 48 1 6.0406 -0.7215 -0.7508 49 1 6.2696 -1.7219 0.7464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412030062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:22 Heat of formation + Delta-G solvation = -132.324194 kcal Electronic energy + Delta-G solvation = -31570.356488 eV Core-core repulsion = 27305.823127 eV Total energy + Delta-G solvation = -4264.533361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74908 -39.64154 -38.00865 -37.21632 -36.89265 -34.43229 -33.91169 -32.18265 -31.10824 -29.44923 -29.12346 -28.87370 -26.94666 -25.19625 -24.98087 -22.51037 -21.64045 -20.71869 -20.33174 -19.86750 -18.48541 -17.78651 -17.19307 -17.04130 -16.70993 -16.15130 -15.58068 -15.32812 -15.25826 -15.04985 -14.73682 -14.51949 -14.14020 -13.99153 -13.60715 -13.30990 -13.22940 -12.90944 -12.73527 -12.44001 -12.11527 -12.10519 -11.91622 -11.68896 -11.53534 -11.51809 -11.41254 -11.34873 -11.21818 -11.07553 -11.02290 -10.90021 -10.65959 -10.47843 -10.32956 -10.16574 -9.79611 -9.69508 -9.29661 -8.92446 -8.74561 -8.34418 -7.81824 -6.40059 -4.49196 2.53300 2.86848 3.03310 3.15544 3.23703 3.26400 3.61382 4.18909 4.23098 4.29886 4.43385 4.55633 4.75148 4.81077 4.88218 4.98391 5.07248 5.09131 5.22092 5.24810 5.28495 5.31335 5.40511 5.54319 5.60870 5.61262 5.68407 5.81215 5.83227 5.91720 5.92491 6.01564 6.04859 6.11503 6.17856 6.22540 6.33946 6.37031 6.58363 6.67028 6.71641 7.14981 7.45287 7.63707 7.70047 7.81412 8.14599 8.42469 8.53424 8.63225 9.21504 9.48742 10.66802 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.002729 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.309872 B =10258.935030 C =10603.749939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 H 0.097 0.903 4 O -0.546 6.546 5 C 0.102 3.898 6 H 0.111 0.889 7 N -0.704 5.704 8 C 0.522 3.478 9 O -0.535 6.535 10 C -0.113 4.113 11 C -0.115 4.115 12 C -0.123 4.123 13 C -0.125 4.125 14 C -0.112 4.112 15 C 0.534 3.466 16 O -0.568 6.568 17 N -0.616 5.616 18 C 0.094 3.906 19 C 0.230 3.770 20 O -0.574 6.574 21 C -0.530 4.530 22 H 0.072 0.928 23 C 0.072 3.928 24 N -0.899 5.899 25 Si 0.909 3.091 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.271 1.271 29 C 0.108 3.892 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.381 0.619 34 H 0.410 0.590 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.100 0.900 46 H 0.394 0.606 47 H 0.273 0.727 48 H 0.086 0.914 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.440 9.843 10.328 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.038 3.962 3 H 0.115 0.885 4 O -0.354 6.354 5 C -0.007 4.007 6 H 0.128 0.872 7 N -0.359 5.359 8 C 0.308 3.692 9 O -0.412 6.412 10 C -0.134 4.134 11 C -0.153 4.153 12 C -0.161 4.161 13 C -0.162 4.162 14 C -0.149 4.149 15 C 0.322 3.678 16 O -0.449 6.449 17 N -0.348 5.348 18 C -0.028 4.028 19 C 0.188 3.812 20 O -0.387 6.387 21 C -0.568 4.568 22 H 0.090 0.910 23 C -0.130 4.130 24 N -0.539 5.539 25 Si 0.736 3.264 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.195 1.195 29 C -0.014 4.014 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.247 0.753 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.118 0.882 46 H 0.250 0.750 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.378 10.393 10.834 18.837 hybrid contribution 0.140 -0.687 -0.950 1.181 sum -11.238 9.705 9.884 17.837 Atomic orbital electron populations 1.22509 0.95091 1.03511 1.01839 1.22133 0.93819 0.96585 0.83660 0.88518 1.86913 1.75602 1.30305 1.42597 1.21523 0.92524 0.99691 0.86970 0.87168 1.45645 1.17826 1.43586 1.28810 1.20522 0.80876 0.82699 0.85080 1.90695 1.56255 1.33914 1.60354 1.22224 0.97381 1.00904 0.92886 1.22564 0.97610 1.02445 0.92665 1.22351 0.94716 1.01301 0.97713 1.22149 0.97284 1.01529 0.95284 1.22072 0.94161 1.03258 0.95459 1.19649 0.88243 0.78107 0.81829 1.90621 1.69836 1.47745 1.36742 1.49577 1.10613 1.53107 1.21453 1.24181 1.00996 0.92764 0.84852 1.19669 0.90525 0.82510 0.88454 1.86042 1.91414 1.20081 1.41179 1.21398 1.23431 1.09631 1.02349 0.91014 1.25060 0.94159 0.95066 0.98744 1.69255 1.32142 1.13415 1.39132 0.86317 0.79416 0.78579 0.82124 1.20337 1.20930 1.19547 1.23344 0.82387 0.97614 0.98050 0.91999 0.92260 0.91255 0.76737 0.75330 0.88215 0.90566 0.90779 0.91406 0.91364 0.91668 0.91777 0.89651 0.91547 0.92572 0.88237 0.74965 0.91614 0.89571 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 8.06 37.16 0.30 -1.91 16 2 C 0.10 1.40 3.34 -26.73 -0.09 1.31 16 3 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 4 O -0.55 -8.37 8.98 -35.23 -0.32 -8.69 16 5 C 0.10 1.60 2.43 -69.08 -0.17 1.43 16 6 H 0.11 1.87 7.58 -51.93 -0.39 1.47 16 7 N -0.70 -9.42 4.83 -54.93 -0.27 -9.68 16 8 C 0.52 6.68 5.50 -10.98 -0.06 6.62 16 9 O -0.54 -8.32 12.54 5.56 0.07 -8.25 16 10 C -0.11 -1.07 3.25 -89.92 -0.29 -1.37 16 11 C -0.11 -1.03 6.34 -24.55 -0.16 -1.19 16 12 C -0.12 -0.91 6.82 -25.07 -0.17 -1.08 16 13 C -0.12 -0.96 6.80 -25.62 -0.17 -1.13 16 14 C -0.11 -1.04 6.18 -25.62 -0.16 -1.19 16 15 C 0.53 10.32 7.47 -10.98 -0.08 10.24 16 16 O -0.57 -12.10 16.61 5.56 0.09 -12.01 16 17 N -0.62 -12.51 3.53 -185.39 -0.65 -13.16 16 18 C 0.09 1.92 4.91 -8.64 -0.04 1.88 16 19 C 0.23 5.37 1.57 -91.41 -0.14 5.23 16 20 O -0.57 -14.54 13.54 -35.23 -0.48 -15.01 16 21 C -0.53 -12.98 8.69 -34.44 -0.30 -13.27 16 22 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 23 C 0.07 1.75 5.39 -17.82 -0.10 1.66 16 24 N -0.90 -22.23 11.01 55.43 0.61 -21.62 16 25 Si 0.91 19.20 29.54 -169.99 -5.02 14.18 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 28 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 29 C 0.11 2.32 8.03 -8.52 -0.07 2.25 16 30 H 0.06 0.79 5.77 -51.93 -0.30 0.49 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.96 7.53 -51.93 -0.39 0.57 16 33 H 0.38 5.36 6.84 45.56 0.31 5.67 16 34 H 0.41 5.16 7.79 -40.82 -0.32 4.85 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.98 6.85 -51.93 -0.36 0.62 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.11 6.68 -51.93 -0.35 0.76 16 45 H 0.10 2.01 6.90 -51.93 -0.36 1.65 16 46 H 0.39 10.09 6.32 45.56 0.29 10.38 16 47 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 48 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 49 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -28.41 382.66 -8.37 -36.78 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -6.47 Total: 22.22 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -1.70 Total: 9.47 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.31 Total: -44.46 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.63 Total: -43.96 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.41 -8.37 -36.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412030062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.544 kcal (2) G-P(sol) polarization free energy of solvation -28.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds