Wall clock time and date at job start Tue Mar 31 2020 23:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46738 * 2 1 4 4 O 1.42901 * 109.47363 * 240.00233 * 2 1 3 5 5 C 1.53000 * 109.47294 * 120.00076 * 2 1 3 6 6 H 1.08992 * 109.46878 * 60.00644 * 5 2 1 7 7 N 1.46499 * 109.47080 * 299.99909 * 5 2 1 8 8 C 1.34775 * 119.99299 * 85.00358 * 7 5 2 9 9 O 1.21276 * 120.00699 * 359.97438 * 8 7 5 10 10 C 1.50709 * 119.99599 * 179.97438 * 8 7 5 11 11 C 1.55238 * 110.58096 * 294.87565 * 10 8 7 12 12 C 1.54894 * 102.58338 * 203.33573 * 11 10 8 13 13 C 1.54266 * 104.31305 * 37.93170 * 12 11 10 14 14 C 1.53869 * 106.60031 * 336.32486 * 13 12 11 15 15 C 1.50705 * 109.46744 * 180.02562 * 5 2 1 16 16 O 1.21283 * 119.99988 * 120.00720 * 15 5 2 17 17 N 1.34773 * 120.00202 * 299.99745 * 15 5 2 18 18 C 1.47067 * 136.05729 * 359.63326 * 17 15 5 19 19 C 1.53233 * 88.08464 * 207.19973 * 18 17 15 20 20 O 1.42905 * 114.19488 * 87.72909 * 19 18 17 21 21 C 1.50693 * 114.32960 * 220.46845 * 19 18 17 22 22 H 1.08001 * 120.00164 * 93.75849 * 21 19 18 23 23 C 1.37880 * 120.00376 * 273.76232 * 21 19 18 24 24 N 1.31516 * 119.99575 * 359.97438 * 23 21 19 25 25 Si 1.86797 * 120.00249 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47226 * 90.00004 * 25 23 21 27 27 H 1.48509 * 109.47191 * 210.00043 * 25 23 21 28 28 H 1.48501 * 109.46895 * 329.99820 * 25 23 21 29 29 C 1.47070 * 136.05877 * 180.02562 * 17 15 5 30 30 H 1.09000 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.08992 * 109.47482 * 60.00204 * 1 2 3 32 32 H 1.09006 * 109.46738 * 180.02562 * 1 2 3 33 33 H 0.96695 * 114.00059 * 300.00391 * 4 2 1 34 34 H 0.96998 * 120.00025 * 264.99975 * 7 5 2 35 35 H 1.09006 * 110.43428 * 57.45967 * 10 8 7 36 36 H 1.08996 * 110.89448 * 85.05138 * 11 10 8 37 37 H 1.08993 * 110.76342 * 321.56803 * 11 10 8 38 38 H 1.09002 * 110.48891 * 279.18596 * 12 11 10 39 39 H 1.08998 * 110.48494 * 156.67683 * 12 11 10 40 40 H 1.09001 * 110.03084 * 95.60669 * 13 12 11 41 41 H 1.08996 * 110.03108 * 216.98559 * 13 12 11 42 42 H 1.08999 * 110.04012 * 119.28327 * 14 13 12 43 43 H 1.09006 * 110.02998 * 240.67078 * 14 13 12 44 44 H 1.08999 * 113.46979 * 321.94078 * 18 17 15 45 45 H 1.09006 * 113.46735 * 92.37341 * 18 17 15 46 46 H 0.96700 * 113.99987 * 86.29836 * 20 19 18 47 47 H 0.97002 * 119.99779 * 180.02562 * 24 23 21 48 48 H 1.08996 * 113.46510 * 267.62574 * 29 17 15 49 49 H 1.09001 * 113.46433 * 38.00623 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.6768 -1.7489 1.2491 7 7 1.5517 -0.0307 2.4454 8 6 0.3298 -0.3167 2.9368 9 8 -0.3657 -1.1453 2.3887 10 6 -0.1724 0.3933 4.1677 11 6 0.6936 0.0241 5.4021 12 6 -0.2668 0.3054 6.5844 13 6 -1.6472 -0.1552 6.0723 14 6 -1.5871 -0.0994 4.5358 15 6 3.5471 -0.7206 1.2494 16 8 4.1532 -0.1955 2.1593 17 7 4.2214 -1.3038 0.2387 18 6 3.8675 -2.0231 -0.9943 19 6 5.2060 -2.7613 -0.8867 20 8 5.1574 -3.9497 -0.0945 21 6 5.9181 -2.9505 -2.2012 22 1 6.6584 -2.2328 -2.5226 23 6 5.6246 -4.0398 -2.9939 24 7 4.7234 -4.9140 -2.6024 25 14 6.5078 -4.2747 -4.6230 26 1 7.7389 -5.0766 -4.4075 27 1 5.6141 -4.9853 -5.5727 28 1 6.8724 -2.9489 -5.1840 29 6 5.6348 -1.5070 -0.1132 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7210 -1.5951 -1.2330 34 1 2.1079 0.6323 2.8836 35 1 -0.1728 1.4721 4.0113 36 1 1.5765 0.6604 5.4619 37 1 0.9755 -1.0284 5.3754 38 1 -0.2825 1.3700 6.8182 39 1 0.0273 -0.2723 7.4606 40 1 -1.8462 -1.1751 6.4013 41 1 -2.4245 0.5140 6.4409 42 1 -1.7569 -1.0921 4.1190 43 1 -2.3358 0.5970 4.1579 44 1 3.0026 -2.6769 -0.8825 45 1 3.7974 -1.3766 -1.8692 46 1 4.8869 -4.7382 -0.5845 47 1 4.5171 -5.6806 -3.1599 48 1 6.0406 -0.7215 -0.7508 49 1 6.2696 -1.7219 0.7464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412030062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:21 Heat of formation + Delta-G solvation = -153.899887 kcal Electronic energy + Delta-G solvation = -31571.292080 eV Core-core repulsion = 27305.823127 eV Total energy + Delta-G solvation = -4265.468953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02112 -41.00635 -39.39028 -38.54534 -37.88468 -35.94442 -35.44967 -34.08622 -32.23237 -30.81451 -30.17700 -29.57930 -28.37121 -26.89283 -26.60189 -23.52764 -22.82613 -21.92835 -21.40314 -20.89547 -19.93345 -19.35821 -18.68995 -18.25543 -17.96561 -17.27965 -17.04736 -16.90499 -16.43303 -16.21063 -15.98557 -15.81411 -15.78498 -15.11310 -14.91707 -14.48581 -14.41449 -14.30830 -14.19312 -13.69182 -13.60725 -13.47453 -13.36933 -13.01265 -12.79274 -12.73602 -12.73058 -12.31146 -12.22940 -12.19815 -12.07619 -12.04675 -11.99838 -11.72153 -11.57993 -11.35610 -11.29080 -10.89446 -10.83937 -10.62759 -10.15362 -10.09475 -9.52115 -8.24634 -6.39902 1.42763 1.48303 1.48517 1.52293 1.60585 1.68892 2.22021 2.43298 2.97219 3.13990 3.45216 3.49502 3.55249 3.66502 3.72679 3.81970 3.86556 4.13760 4.18178 4.22177 4.36788 4.46142 4.48588 4.51811 4.58047 4.59207 4.62391 4.76476 4.78436 4.86125 4.90305 4.93357 4.95230 5.02580 5.09756 5.10342 5.21143 5.26184 5.27625 5.35563 5.39705 5.48395 5.76698 5.94943 6.40317 6.53915 6.64499 6.82141 6.98873 7.13042 7.32923 7.51870 8.81475 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.002729 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.309872 B =10258.935030 C =10603.749939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.106 3.894 3 H 0.103 0.897 4 O -0.557 6.557 5 C 0.114 3.886 6 H 0.097 0.903 7 N -0.701 5.701 8 C 0.520 3.480 9 O -0.564 6.564 10 C -0.107 4.107 11 C -0.116 4.116 12 C -0.118 4.118 13 C -0.123 4.123 14 C -0.112 4.112 15 C 0.529 3.471 16 O -0.588 6.588 17 N -0.619 5.619 18 C 0.116 3.884 19 C 0.207 3.793 20 O -0.589 6.589 21 C -0.547 4.547 22 H 0.072 0.928 23 C 0.033 3.967 24 N -0.916 5.916 25 Si 0.968 3.032 26 H -0.280 1.280 27 H -0.281 1.281 28 H -0.266 1.266 29 C 0.108 3.892 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.385 0.615 34 H 0.415 0.585 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.389 0.611 47 H 0.276 0.724 48 H 0.103 0.897 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.328 11.522 10.464 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.121 0.879 4 O -0.365 6.365 5 C 0.004 3.996 6 H 0.115 0.885 7 N -0.355 5.355 8 C 0.309 3.691 9 O -0.443 6.443 10 C -0.128 4.128 11 C -0.154 4.154 12 C -0.155 4.155 13 C -0.160 4.160 14 C -0.150 4.150 15 C 0.318 3.682 16 O -0.471 6.471 17 N -0.350 5.350 18 C -0.006 4.006 19 C 0.166 3.834 20 O -0.402 6.402 21 C -0.586 4.586 22 H 0.090 0.910 23 C -0.167 4.167 24 N -0.557 5.557 25 Si 0.793 3.207 26 H -0.206 1.206 27 H -0.207 1.207 28 H -0.191 1.191 29 C -0.014 4.014 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.253 0.747 35 H 0.145 0.855 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.245 0.755 47 H 0.086 0.914 48 H 0.120 0.880 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.273 12.090 10.988 20.434 hybrid contribution 0.440 -1.233 -0.934 1.608 sum -11.833 10.858 10.054 18.947 Atomic orbital electron populations 1.22372 0.93753 1.02962 1.02560 1.22144 0.94640 0.96332 0.82392 0.87920 1.86868 1.75985 1.30700 1.42956 1.21355 0.89685 0.99644 0.88917 0.88538 1.45658 1.18181 1.43459 1.28248 1.21162 0.80153 0.82248 0.85543 1.90689 1.56953 1.35243 1.61398 1.22316 0.97392 1.01946 0.91160 1.22579 0.98374 1.01274 0.93217 1.22351 0.93726 1.02488 0.96973 1.22147 0.98135 1.01782 0.93957 1.22069 0.94257 1.01995 0.96652 1.20279 0.89692 0.77259 0.80934 1.90602 1.70740 1.48537 1.37243 1.49590 1.10091 1.53490 1.21814 1.23878 0.99519 0.92238 0.85015 1.19969 0.92631 0.82362 0.88449 1.86026 1.91648 1.20687 1.41844 1.21614 1.23877 1.10110 1.02951 0.90954 1.25715 0.94734 0.94823 1.01446 1.69315 1.32780 1.13632 1.39974 0.85399 0.78121 0.78429 0.78732 1.20630 1.20680 1.19068 1.23329 0.83068 0.97395 0.97654 0.91753 0.90931 0.92432 0.76266 0.74672 0.85518 0.89668 0.92997 0.89628 0.90938 0.92222 0.90028 0.92342 0.90393 0.92224 0.87733 0.75504 0.91444 0.87960 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 8.06 71.98 0.58 -3.30 16 2 C 0.11 2.87 3.34 30.59 0.10 2.98 16 3 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 4 O -0.56 -16.52 8.98 -148.98 -1.34 -17.85 16 5 C 0.11 3.52 2.43 44.25 0.11 3.62 16 6 H 0.10 3.30 7.58 -2.39 -0.02 3.29 16 7 N -0.70 -18.17 4.83 -446.10 -2.16 -20.33 16 8 C 0.52 12.94 5.50 87.66 0.48 13.42 16 9 O -0.56 -17.49 12.54 -3.02 -0.04 -17.53 16 10 C -0.11 -1.86 3.25 -10.34 -0.03 -1.89 16 11 C -0.12 -1.91 6.34 32.01 0.20 -1.71 16 12 C -0.12 -1.46 6.82 31.67 0.22 -1.24 16 13 C -0.12 -1.64 6.80 31.32 0.21 -1.42 16 14 C -0.11 -1.92 6.18 31.32 0.19 -1.72 16 15 C 0.53 20.32 7.47 87.66 0.65 20.97 16 16 O -0.59 -24.90 16.61 -3.04 -0.05 -24.95 16 17 N -0.62 -25.04 3.53 -859.31 -3.03 -28.08 16 18 C 0.12 4.68 4.91 83.09 0.41 5.09 16 19 C 0.21 9.73 1.57 -11.30 -0.02 9.71 16 20 O -0.59 -30.42 13.54 -148.98 -2.02 -32.44 16 21 C -0.55 -26.76 8.69 25.60 0.22 -26.53 16 22 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 23 C 0.03 1.60 5.39 84.66 0.46 2.06 16 24 N -0.92 -45.33 11.01 21.45 0.24 -45.09 16 25 Si 0.97 38.95 29.54 68.60 2.03 40.97 16 26 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 29 C 0.11 4.65 8.03 83.17 0.67 5.32 16 30 H 0.06 1.54 5.77 -2.39 -0.01 1.53 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.55 7.53 -2.38 -0.02 1.53 16 33 H 0.39 10.64 6.84 -74.06 -0.51 10.13 16 34 H 0.42 9.98 7.79 -92.71 -0.72 9.25 16 35 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.08 8.06 -2.39 -0.02 1.06 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 1.33 6.85 -2.39 -0.02 1.32 16 43 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.06 2.36 6.68 -2.39 -0.02 2.34 16 45 H 0.10 4.15 6.90 -2.38 -0.02 4.13 16 46 H 0.39 20.41 6.32 -74.06 -0.47 19.94 16 47 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 48 H 0.10 4.01 8.10 -2.39 -0.02 3.99 16 49 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -60.28 382.66 -2.61 -62.89 By element: Atomic # 1 Polarization: 57.75 SS G_CDS: -0.70 Total: 57.05 kcal Atomic # 6 Polarization: 20.90 SS G_CDS: 4.46 Total: 25.35 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -4.95 Total: -93.49 kcal Atomic # 8 Polarization: -89.33 SS G_CDS: -3.44 Total: -92.77 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.97 kcal Total: -60.28 -2.61 -62.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412030062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.008 kcal (2) G-P(sol) polarization free energy of solvation -60.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds