Wall clock time and date at job start Tue Mar 31 2020 23:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.53001 * 109.47376 * 239.99703 * 2 1 3 6 6 H 1.08999 * 109.47164 * 300.00361 * 5 2 1 7 7 N 1.46492 * 109.47023 * 60.00310 * 5 2 1 8 8 C 1.34785 * 120.00227 * 275.00112 * 7 5 2 9 9 O 1.21287 * 119.99587 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00393 * 179.97438 * 8 7 5 11 11 C 1.54263 * 110.03079 * 297.90918 * 10 8 7 12 12 C 1.54965 * 104.15916 * 217.13286 * 11 10 8 13 13 C 1.54893 * 102.77518 * 37.88963 * 12 11 10 14 14 C 1.53866 * 110.03409 * 180.68878 * 10 8 7 15 15 C 1.50701 * 109.46986 * 180.02562 * 5 2 1 16 16 O 1.21279 * 119.99678 * 240.00002 * 15 5 2 17 17 N 1.34774 * 120.00106 * 59.99768 * 15 5 2 18 18 C 1.47061 * 136.05971 * 359.63678 * 17 15 5 19 19 C 1.53751 * 87.89066 * 152.95588 * 18 17 15 20 20 O 1.42892 * 114.39833 * 272.67368 * 19 18 17 21 21 C 1.50708 * 114.26591 * 139.78802 * 19 18 17 22 22 H 1.08004 * 119.99821 * 266.47737 * 21 19 18 23 23 C 1.37866 * 119.99863 * 86.47953 * 21 19 18 24 24 N 1.31520 * 120.00291 * 179.97438 * 23 21 19 25 25 Si 1.86803 * 120.00227 * 359.97438 * 23 21 19 26 26 H 1.48492 * 109.47122 * 90.00215 * 25 23 21 27 27 H 1.48502 * 109.47081 * 210.00452 * 25 23 21 28 28 H 1.48503 * 109.47058 * 329.99889 * 25 23 21 29 29 C 1.47071 * 136.05366 * 179.97438 * 17 15 5 30 30 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 31 31 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 32 32 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 33 33 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 34 34 H 0.97000 * 120.00422 * 94.99313 * 7 5 2 35 35 H 1.09004 * 110.01198 * 59.29516 * 10 8 7 36 36 H 1.08996 * 110.48779 * 335.77846 * 11 10 8 37 37 H 1.08995 * 110.48978 * 98.42729 * 11 10 8 38 38 H 1.08995 * 110.72475 * 279.57808 * 12 11 10 39 39 H 1.09005 * 110.92269 * 156.29198 * 12 11 10 40 40 H 1.09003 * 110.48719 * 203.40736 * 13 12 11 41 41 H 1.08998 * 110.60452 * 80.81724 * 13 12 11 42 42 H 1.08998 * 110.03579 * 238.57420 * 14 10 8 43 43 H 1.09003 * 110.03205 * 0.02562 * 14 10 8 44 44 H 1.09008 * 113.46409 * 267.69268 * 18 17 15 45 45 H 1.08999 * 113.47224 * 38.12307 * 18 17 15 46 46 H 0.96695 * 114.00200 * 273.58672 * 20 19 18 47 47 H 0.96995 * 120.00647 * 179.97438 * 24 23 21 48 48 H 1.08998 * 113.46861 * 321.86350 * 29 17 15 49 49 H 1.08997 * 113.46446 * 92.25091 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0401 -0.7213 -1.2492 6 1 1.6767 -1.7490 -1.2492 7 7 1.5519 -0.0307 -2.4453 8 6 0.3298 -0.3165 -2.9369 9 8 -0.3657 -1.1451 -2.3886 10 6 -0.1727 0.3943 -4.1671 11 6 -0.2796 1.9090 -3.8955 12 6 -1.5549 2.3424 -4.6619 13 6 -2.5107 1.1436 -4.4420 14 6 -1.5904 -0.0923 -4.5148 15 6 3.5471 -0.7218 -1.2488 16 8 4.1539 -0.1967 -2.1582 17 7 4.2205 -1.3057 -0.2378 18 6 3.8657 -2.0137 1.0013 19 6 5.2035 -2.7632 0.8890 20 8 5.1496 -3.9513 0.0969 21 6 5.9185 -2.9543 2.2018 22 1 6.6616 -2.2386 2.5211 23 6 5.6240 -4.0428 2.9950 24 7 6.2483 -4.2100 4.1404 25 14 4.3382 -5.2804 2.4429 26 1 4.9909 -6.3506 1.6469 27 1 3.6836 -5.8787 3.6340 28 1 3.3179 -4.5955 1.6091 29 6 5.6337 -1.5099 0.1145 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7209 -1.5952 1.2330 34 1 2.1080 0.6323 -2.8836 35 1 0.5007 0.2117 -5.0046 36 1 -0.3936 2.0981 -2.8281 37 1 0.5955 2.4292 -4.2847 38 1 -1.3408 2.4763 -5.7222 39 1 -1.9742 3.2539 -4.2358 40 1 -3.2630 1.1060 -5.2299 41 1 -2.9871 1.2073 -3.4637 42 1 -1.6053 -0.5102 -5.5214 43 1 -1.9151 -0.8422 -3.7935 44 1 3.8057 -1.3608 1.8722 45 1 2.9942 -2.6601 0.8977 46 1 4.8783 -4.7391 0.5876 47 1 6.0409 -4.9756 4.6987 48 1 6.2683 -1.7273 -0.7447 49 1 6.0404 -0.7237 0.7505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412030071.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:26 Heat of formation + Delta-G solvation = -137.650774 kcal Electronic energy + Delta-G solvation = -31810.291842 eV Core-core repulsion = 27545.527504 eV Total energy + Delta-G solvation = -4264.764339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.12569 -41.17375 -39.59068 -38.57627 -37.86603 -36.38216 -35.51677 -34.52442 -32.27192 -30.98127 -30.21918 -29.56507 -28.54187 -26.98504 -26.72957 -23.52786 -22.82344 -22.04453 -21.54173 -20.94793 -20.09650 -19.34853 -18.78468 -18.54624 -18.16328 -17.93099 -17.02457 -16.97920 -16.63509 -16.22324 -15.99934 -15.85874 -15.55676 -15.31043 -15.03591 -14.80637 -14.68539 -14.44268 -14.28358 -14.13371 -13.70365 -13.66906 -13.43729 -12.96290 -12.81611 -12.73782 -12.64107 -12.40717 -12.29615 -12.21924 -12.03326 -11.94569 -11.93564 -11.68803 -11.60639 -11.40713 -11.35609 -11.02225 -10.85545 -10.82205 -10.36214 -10.15173 -9.64867 -8.40338 -6.51415 1.26167 1.28704 1.38155 1.42026 1.46423 1.64360 2.17791 2.18845 2.77701 3.04185 3.30860 3.40883 3.47423 3.58987 3.65075 3.78650 3.82337 3.87309 4.11334 4.22097 4.34718 4.36957 4.46465 4.47014 4.53928 4.56162 4.63926 4.68293 4.69019 4.77635 4.81055 4.81494 4.92134 4.96973 5.07324 5.10282 5.11959 5.23419 5.25261 5.26816 5.31061 5.42898 5.47842 6.04625 6.38957 6.52922 6.55744 6.67117 6.73314 6.92200 7.11150 7.15839 8.75064 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022034 B = 0.002957 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.459407 B = 9466.222549 C = 9765.297405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 H 0.102 0.898 4 O -0.557 6.557 5 C 0.112 3.888 6 H 0.104 0.896 7 N -0.701 5.701 8 C 0.521 3.479 9 O -0.562 6.562 10 C -0.109 4.109 11 C -0.115 4.115 12 C -0.119 4.119 13 C -0.123 4.123 14 C -0.120 4.120 15 C 0.533 3.467 16 O -0.583 6.583 17 N -0.620 5.620 18 C 0.102 3.898 19 C 0.172 3.828 20 O -0.560 6.560 21 C -0.535 4.535 22 H 0.058 0.942 23 C 0.028 3.972 24 N -0.924 5.924 25 Si 0.919 3.081 26 H -0.261 1.261 27 H -0.283 1.283 28 H -0.229 1.229 29 C 0.121 3.879 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.386 0.614 34 H 0.416 0.584 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.355 0.645 47 H 0.273 0.727 48 H 0.063 0.937 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.036 10.988 -14.549 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 H 0.120 0.880 4 O -0.366 6.366 5 C 0.002 3.998 6 H 0.122 0.878 7 N -0.356 5.356 8 C 0.309 3.691 9 O -0.440 6.440 10 C -0.130 4.130 11 C -0.153 4.153 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.158 4.158 15 C 0.323 3.677 16 O -0.465 6.465 17 N -0.352 5.352 18 C -0.020 4.020 19 C 0.131 3.869 20 O -0.372 6.372 21 C -0.573 4.573 22 H 0.076 0.924 23 C -0.173 4.173 24 N -0.561 5.561 25 Si 0.744 3.256 26 H -0.188 1.188 27 H -0.209 1.209 28 H -0.152 1.152 29 C -0.002 4.002 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.238 0.762 34 H 0.254 0.746 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.134 0.866 45 H 0.095 0.905 46 H 0.208 0.792 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.850 11.625 -14.963 26.032 hybrid contribution 0.041 -1.520 0.394 1.571 sum -17.809 10.105 -14.570 25.131 Atomic orbital electron populations 1.22381 0.93720 1.03103 1.02538 1.22158 0.94658 0.96420 0.82348 0.87970 1.86891 1.75894 1.30733 1.43055 1.21397 0.89494 1.00001 0.88893 0.87810 1.45645 1.18146 1.43497 1.28329 1.21154 0.80048 0.81958 0.85901 1.90675 1.56705 1.35190 1.61437 1.22035 0.99446 0.96932 0.94629 1.22417 1.00246 0.91513 1.01084 1.22509 0.94192 0.97920 1.00981 1.22361 0.97826 0.94008 1.01860 1.22169 0.92233 0.99018 1.02340 1.20269 0.89691 0.77003 0.80753 1.90627 1.70670 1.47974 1.37197 1.49506 1.09872 1.54377 1.21417 1.24274 0.98433 0.93183 0.86157 1.20536 0.94335 0.83004 0.89043 1.86459 1.91583 1.18418 1.40741 1.21212 1.23501 1.10680 1.01925 0.92407 1.25799 0.97681 0.99344 0.94525 1.69988 1.42769 1.30587 1.12770 0.86334 0.80546 0.80090 0.78647 1.18758 1.20904 1.15248 1.23114 0.83357 0.95991 0.97693 0.91070 0.91801 0.92157 0.76208 0.74646 0.86860 0.91798 0.89264 0.90055 0.90451 0.90373 0.92362 0.90401 0.91533 0.86627 0.90478 0.79212 0.91746 0.91801 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.06 71.98 0.58 -2.92 16 2 C 0.10 2.55 3.34 30.60 0.10 2.65 16 3 H 0.10 2.46 8.14 -2.39 -0.02 2.45 16 4 O -0.56 -14.61 8.96 -148.98 -1.34 -15.94 16 5 C 0.11 3.06 2.43 44.25 0.11 3.17 16 6 H 0.10 3.04 7.58 -2.39 -0.02 3.03 16 7 N -0.70 -16.26 4.78 -446.10 -2.13 -18.39 16 8 C 0.52 11.66 5.36 87.66 0.47 12.13 16 9 O -0.56 -15.74 12.33 -3.05 -0.04 -15.78 16 10 C -0.11 -1.71 3.29 -10.82 -0.04 -1.75 16 11 C -0.11 -1.37 6.30 31.69 0.20 -1.17 16 12 C -0.12 -1.16 6.91 31.91 0.22 -0.94 16 13 C -0.12 -1.51 6.83 31.67 0.22 -1.29 16 14 C -0.12 -1.88 6.40 31.32 0.20 -1.68 16 15 C 0.53 18.58 7.47 87.66 0.65 19.23 16 16 O -0.58 -22.85 16.61 -3.03 -0.05 -22.90 16 17 N -0.62 -22.80 3.53 -858.27 -3.03 -25.83 16 18 C 0.10 3.67 4.38 83.27 0.36 4.03 16 19 C 0.17 7.47 1.10 -11.12 -0.01 7.45 16 20 O -0.56 -25.03 13.33 -148.98 -1.99 -27.01 16 21 C -0.54 -27.38 9.28 25.60 0.24 -27.15 16 22 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 23 C 0.03 1.43 5.47 84.65 0.46 1.89 16 24 N -0.92 -52.09 13.96 21.44 0.30 -51.79 16 25 Si 0.92 37.40 24.42 68.60 1.68 39.07 16 26 H -0.26 -10.37 7.06 99.48 0.70 -9.67 16 27 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.23 -8.12 5.50 99.48 0.55 -7.57 16 29 C 0.12 4.88 8.02 83.17 0.67 5.55 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.40 5.77 -2.39 -0.01 1.39 16 32 H 0.06 1.44 7.53 -2.39 -0.02 1.42 16 33 H 0.39 8.72 6.81 -74.06 -0.50 8.21 16 34 H 0.42 8.98 7.78 -92.71 -0.72 8.26 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 0.87 7.85 -2.39 -0.02 0.85 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 1.40 6.39 -2.39 -0.02 1.38 16 44 H 0.12 4.15 6.94 -2.38 -0.02 4.14 16 45 H 0.08 2.45 5.61 -2.39 -0.01 2.44 16 46 H 0.35 14.91 3.16 -74.06 -0.23 14.68 16 47 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 48 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 49 H 0.10 3.95 8.10 -2.39 -0.02 3.93 16 Total: -1.00 -65.43 373.53 -2.79 -68.22 By element: Atomic # 1 Polarization: 51.77 SS G_CDS: -0.62 Total: 51.15 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 4.43 Total: 19.21 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -4.87 Total: -96.01 kcal Atomic # 8 Polarization: -78.23 SS G_CDS: -3.41 Total: -81.64 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 1.68 Total: 39.07 kcal Total: -65.43 -2.79 -68.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412030071.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.431 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds