Wall clock time and date at job start Tue Mar 31 2020 23:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46890 * 2 1 4 4 C 1.52997 * 109.47248 * 120.00080 * 2 1 3 5 5 C 1.52994 * 109.47184 * 185.00052 * 4 2 1 6 6 C 1.53003 * 109.47459 * 180.02562 * 5 4 2 7 7 N 1.46493 * 109.47310 * 179.97438 * 6 5 4 8 8 C 1.36942 * 120.00275 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99573 * 0.02562 * 8 7 6 10 10 C 1.38807 * 120.00320 * 180.02562 * 8 7 6 11 11 N 1.31621 * 120.00312 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99925 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.46981 * 90.00754 * 12 10 8 14 14 H 1.48508 * 109.47245 * 210.00482 * 12 10 8 15 15 H 1.48496 * 109.47323 * 330.00610 * 12 10 8 16 16 N 1.46496 * 109.46916 * 240.00355 * 2 1 3 17 17 C 1.34779 * 120.00054 * 84.99734 * 16 2 1 18 18 O 1.21273 * 120.00093 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99767 * 179.97438 * 17 16 2 20 20 C 1.53000 * 109.46735 * 180.02562 * 19 17 16 21 21 C 1.50703 * 109.46912 * 180.02562 * 20 19 17 22 22 C 1.38205 * 119.99664 * 264.72412 * 21 20 19 23 23 C 1.38432 * 119.99473 * 179.76905 * 22 21 20 24 24 F 1.35106 * 119.99999 * 180.27208 * 23 22 21 25 25 C 1.38472 * 120.00308 * 0.53097 * 23 22 21 26 26 C 1.38165 * 119.99635 * 359.72209 * 25 23 22 27 27 C 1.38420 * 120.00085 * 85.00081 * 21 20 19 28 28 F 1.35103 * 120.00346 * 359.97438 * 27 21 20 29 29 H 1.09005 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46953 * 299.99699 * 1 2 3 31 31 H 1.08997 * 109.47739 * 59.99884 * 1 2 3 32 32 H 1.09001 * 109.47475 * 305.00216 * 4 2 1 33 33 H 1.09004 * 109.47067 * 65.00168 * 4 2 1 34 34 H 1.09004 * 109.47483 * 300.00185 * 5 4 2 35 35 H 1.09003 * 109.47542 * 60.00176 * 5 4 2 36 36 H 1.08992 * 109.46980 * 300.00090 * 6 5 4 37 37 H 1.09004 * 109.47018 * 59.99976 * 6 5 4 38 38 H 0.97000 * 120.00351 * 0.02562 * 7 6 5 39 39 H 0.96997 * 120.00492 * 179.97438 * 11 10 8 40 40 H 0.97005 * 120.00266 * 264.99556 * 16 2 1 41 41 H 1.09001 * 109.46797 * 60.00350 * 19 17 16 42 42 H 1.08992 * 109.47518 * 300.00347 * 19 17 16 43 43 H 1.09002 * 109.47398 * 300.00410 * 20 19 17 44 44 H 1.09001 * 109.47194 * 60.00591 * 20 19 17 45 45 H 1.07999 * 120.00330 * 0.02562 * 22 21 20 46 46 H 1.08000 * 120.00156 * 179.70008 * 25 23 22 47 47 H 1.07995 * 119.99700 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0750 -1.3351 2.5625 7 7 5.5350 -1.2322 2.6239 8 6 6.2189 -1.8065 3.6620 9 1 5.6818 -2.3357 4.4353 10 6 7.6023 -1.7086 3.7204 11 7 8.2597 -2.2610 4.7179 12 14 8.5312 -0.7939 2.3825 13 1 8.6625 0.6363 2.7603 14 1 9.8821 -1.3895 2.2220 15 1 7.7876 -0.9013 1.1016 16 7 2.0183 -0.6905 -1.1962 17 6 2.1469 -0.0181 -2.3572 18 8 1.8589 1.1587 -2.4115 19 6 2.6498 -0.7284 -3.5875 20 6 2.7017 0.2549 -4.7586 21 6 3.2039 -0.4555 -5.9891 22 6 4.5446 -0.4004 -6.3199 23 6 5.0068 -1.0569 -7.4476 24 9 6.3184 -1.0076 -7.7681 25 6 4.1239 -1.7597 -8.2503 26 6 2.7827 -1.8103 -7.9223 27 6 2.3215 -1.1584 -6.7911 28 9 1.0100 -1.2080 -6.4706 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7716 1.2055 34 1 3.9995 -1.0727 0.4259 35 1 3.8532 0.4370 1.3573 36 1 3.6404 -0.8760 3.4504 37 1 3.7866 -2.3854 2.5184 38 1 6.0173 -0.7566 1.9295 39 1 9.2264 -2.1929 4.7586 40 1 2.2491 -1.6317 -1.1527 41 1 1.9775 -1.5507 -3.8326 42 1 3.6490 -1.1202 -3.3981 43 1 1.7025 0.6472 -4.9482 44 1 3.3742 1.0769 -4.5133 45 1 5.2325 0.1514 -5.6964 46 1 4.4837 -2.2678 -9.1327 47 1 2.0941 -2.3581 -8.5485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485752436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:38 Heat of formation + Delta-G solvation = -135.809302 kcal Electronic energy + Delta-G solvation = -28351.214092 eV Core-core repulsion = 23975.442090 eV Total energy + Delta-G solvation = -4375.772002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.96768 -49.96050 -40.99684 -39.93308 -38.07121 -36.64787 -35.13647 -34.22209 -32.88237 -31.62032 -31.12147 -30.26311 -27.38633 -26.16342 -24.43316 -23.98302 -22.81982 -22.45997 -21.73272 -21.32645 -19.62903 -18.72382 -18.41950 -18.27716 -17.83268 -17.33540 -16.86023 -16.60228 -16.49355 -16.37013 -15.90771 -15.76978 -15.41532 -15.36454 -15.03911 -14.93929 -14.70531 -14.49894 -14.23431 -13.87838 -13.80916 -13.62986 -13.49630 -13.46602 -13.43209 -13.04953 -12.84998 -12.63846 -12.49759 -12.11404 -12.08741 -12.03220 -11.96879 -11.87604 -11.75172 -11.53343 -10.98303 -10.88831 -10.14883 -10.04475 -9.57181 -9.30819 -8.04592 -5.38156 -0.12312 -0.00931 1.36168 1.39944 1.47280 1.66750 2.18397 2.37389 2.46773 3.11134 3.15108 3.26873 3.44545 3.50762 3.61910 3.83541 3.90199 3.97166 4.04553 4.10415 4.16453 4.18167 4.21587 4.40430 4.55548 4.59040 4.66187 4.70049 4.74768 4.81605 4.86222 4.91539 4.93785 4.98097 5.00465 5.01715 5.09888 5.13269 5.19093 5.31017 5.36673 5.42475 5.61834 5.74260 5.75250 6.20033 6.59351 7.06580 7.29121 7.83735 8.01864 9.16972 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008909 B = 0.002419 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.286128 B =11570.917873 C =14160.333684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.117 4.117 6 C 0.151 3.849 7 N -0.762 5.762 8 C -0.237 4.237 9 H 0.056 0.944 10 C -0.066 4.066 11 N -0.984 5.984 12 Si 0.957 3.043 13 H -0.280 1.280 14 H -0.294 1.294 15 H -0.251 1.251 16 N -0.715 5.715 17 C 0.512 3.488 18 O -0.584 6.584 19 C -0.131 4.131 20 C -0.062 4.062 21 C -0.089 4.089 22 C -0.126 4.126 23 C 0.078 3.922 24 F -0.144 7.144 25 C -0.123 4.123 26 C -0.116 4.116 27 C 0.079 3.921 28 F -0.139 7.139 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.029 0.971 38 H 0.365 0.635 39 H 0.258 0.742 40 H 0.413 0.587 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.152 0.848 46 H 0.169 0.831 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.919 1.122 -29.707 34.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.039 3.961 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.155 4.155 6 C 0.025 3.975 7 N -0.408 5.408 8 C -0.368 4.368 9 H 0.074 0.926 10 C -0.258 4.258 11 N -0.635 5.635 12 Si 0.784 3.216 13 H -0.206 1.206 14 H -0.220 1.220 15 H -0.175 1.175 16 N -0.367 5.367 17 C 0.300 3.700 18 O -0.464 6.464 19 C -0.170 4.170 20 C -0.099 4.099 21 C -0.090 4.090 22 C -0.145 4.145 23 C 0.059 3.941 24 F -0.123 7.123 25 C -0.141 4.141 26 C -0.135 4.135 27 C 0.060 3.940 28 F -0.118 7.118 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.047 0.953 38 H 0.198 0.802 39 H 0.067 0.933 40 H 0.250 0.750 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.170 0.830 46 H 0.186 0.814 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.135 1.828 -29.525 34.186 hybrid contribution 1.158 0.113 -0.073 1.166 sum -15.977 1.941 -29.599 33.691 Atomic orbital electron populations 1.22098 0.94217 1.02879 1.02173 1.20932 0.94532 0.96624 0.84035 0.91589 1.21747 0.93732 1.02254 0.97226 1.21654 0.96544 1.00093 0.97161 1.20852 0.82043 0.97889 0.96670 1.42792 1.03791 1.66706 1.27529 1.19075 0.90224 1.26454 1.01075 0.92553 1.25552 0.97320 1.02231 1.00649 1.69885 1.07529 1.51562 1.34477 0.85381 0.77861 0.78257 0.80105 1.20629 1.22014 1.17525 1.46112 1.66643 1.14750 1.09231 1.21016 0.76652 0.86891 0.85453 1.90687 1.52074 1.17885 1.85781 1.21651 1.04844 0.99462 0.91078 1.20202 1.02756 0.97125 0.89848 1.19701 0.92709 0.99115 0.97515 1.21081 0.95479 1.00917 0.97043 1.17910 0.78389 1.01190 0.96645 1.91519 1.33184 1.95027 1.92526 1.21284 0.92158 0.99643 1.01034 1.21264 0.96374 0.99821 0.96009 1.17763 0.78102 1.01357 0.96767 1.91506 1.32776 1.94872 1.92646 0.91048 0.90602 0.93839 0.89378 0.89467 0.91535 0.92763 0.95971 0.95343 0.80225 0.93282 0.74994 0.87036 0.86811 0.90651 0.89883 0.83005 0.81390 0.81190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.48 71.98 0.68 -1.89 16 2 C 0.14 2.72 2.57 44.99 0.12 2.84 16 3 H 0.07 1.59 7.58 -2.39 -0.02 1.57 16 4 C -0.11 -2.09 4.75 30.59 0.15 -1.95 16 5 C -0.12 -3.07 5.22 30.59 0.16 -2.91 16 6 C 0.15 5.47 6.26 86.38 0.54 6.01 16 7 N -0.76 -35.72 5.41 -343.46 -1.86 -37.58 16 8 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 9 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 10 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 11 N -0.98 -63.55 13.97 21.65 0.30 -63.25 16 12 Si 0.96 45.75 27.73 68.60 1.90 47.65 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 15 H -0.25 -10.73 6.52 99.48 0.65 -10.08 16 16 N -0.72 -12.25 4.53 -442.55 -2.00 -14.25 16 17 C 0.51 10.44 7.79 87.66 0.68 11.13 16 18 O -0.58 -16.76 15.64 -3.01 -0.05 -16.81 16 19 C -0.13 -1.84 5.68 29.85 0.17 -1.67 16 20 C -0.06 -0.98 4.41 29.85 0.13 -0.85 16 21 C -0.09 -1.27 5.14 -19.83 -0.10 -1.37 16 22 C -0.13 -1.75 9.66 22.31 0.22 -1.54 16 23 C 0.08 1.08 7.30 22.37 0.16 1.25 16 24 F -0.14 -2.41 17.27 44.97 0.78 -1.64 16 25 C -0.12 -1.19 10.02 22.31 0.22 -0.97 16 26 C -0.12 -1.10 10.02 22.31 0.22 -0.88 16 27 C 0.08 1.08 7.24 22.37 0.16 1.25 16 28 F -0.14 -2.22 16.56 44.97 0.74 -1.47 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.07 1.68 7.75 -2.38 -0.02 1.66 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.36 16.30 5.53 -92.71 -0.51 15.79 16 39 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 40 H 0.41 5.10 8.60 -92.70 -0.80 4.30 16 41 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.40 7.75 -2.39 -0.02 1.38 16 44 H 0.08 1.43 8.01 -2.39 -0.02 1.41 16 45 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 46 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 47 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -75.75 400.56 4.30 -71.45 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.38 Total: 23.75 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.86 Total: -7.85 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -3.56 Total: -115.08 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.05 Total: -16.81 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 1.52 Total: -3.11 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Total: -75.75 4.30 -71.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485752436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.361 kcal (2) G-P(sol) polarization free energy of solvation -75.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds