Wall clock time and date at job start Tue Mar 31 2020 23:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.52999 * 109.46994 * 119.99755 * 2 1 3 5 5 H 1.08995 * 109.47098 * 185.00096 * 4 2 1 6 6 C 1.53004 * 109.47083 * 305.00173 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00028 * 179.97438 * 8 7 6 11 11 H 1.08999 * 109.46766 * 59.99867 * 10 8 7 12 12 C 1.52998 * 109.47128 * 299.99974 * 10 8 7 13 13 C 1.50696 * 109.47012 * 179.97438 * 10 8 7 14 14 C 1.38258 * 119.96560 * 59.73057 * 13 10 8 15 15 C 1.38219 * 120.07024 * 179.72403 * 14 13 10 16 16 C 1.38413 * 119.99888 * 0.54701 * 15 14 13 17 17 F 1.35093 * 120.03546 * 179.74969 * 16 15 14 18 18 C 1.38655 * 119.92933 * 359.72433 * 16 15 14 19 19 F 1.35093 * 120.03477 * 180.02562 * 18 16 15 20 20 C 1.38220 * 119.96360 * 239.99927 * 13 10 8 21 21 N 1.46498 * 109.47257 * 65.00162 * 4 2 1 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47213 * 60.00246 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99875 * 26 24 22 30 30 H 1.08995 * 109.47325 * 299.99981 * 1 2 3 31 31 H 1.09008 * 109.46564 * 60.00321 * 1 2 3 32 32 H 1.08997 * 109.46808 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47325 * 240.00019 * 2 1 3 34 34 H 1.09002 * 109.47383 * 59.99711 * 3 2 1 35 35 H 1.09000 * 109.47552 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47107 * 299.99722 * 3 2 1 37 37 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 38 38 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 39 39 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 40 40 H 1.08996 * 109.47454 * 59.99731 * 12 10 8 41 41 H 1.09005 * 109.46765 * 180.02562 * 12 10 8 42 42 H 1.09001 * 109.46707 * 299.99480 * 12 10 8 43 43 H 1.08000 * 119.96487 * 359.97438 * 14 13 10 44 44 H 1.07994 * 119.99909 * 180.27445 * 15 14 13 45 45 H 1.07996 * 120.00251 * 0.02707 * 20 13 10 46 46 H 0.97001 * 120.00384 * 265.00562 * 21 4 2 47 47 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.4299 -0.0761 2.4953 7 7 1.8226 -0.8395 3.6824 8 6 1.3986 -0.4540 4.9023 9 8 0.6922 0.5251 5.0172 10 6 1.8021 -1.2396 6.1233 11 1 2.8886 -1.2423 6.2109 12 6 1.2973 -2.6782 5.9941 13 6 1.2013 -0.6042 7.3506 14 6 -0.1713 -0.4830 7.4638 15 6 -0.7249 0.0943 8.5911 16 6 0.0954 0.5620 9.6030 17 9 -0.4447 1.1309 10.7029 18 6 1.4722 0.4454 9.4870 19 9 2.2749 0.9007 10.4736 20 6 2.0233 -0.1383 8.3594 21 7 1.6525 -2.1328 1.1907 22 6 2.4317 -3.0290 0.5088 23 1 3.3343 -2.6959 0.0180 24 6 2.0615 -4.3654 0.4484 25 7 0.9613 -4.7712 1.0461 26 14 3.1248 -5.5880 -0.4812 27 1 4.4831 -5.6188 0.1183 28 1 2.5150 -6.9394 -0.3962 29 1 3.2213 -5.1778 -1.9051 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.7895 0.9487 2.5870 38 1 0.3434 -0.0736 2.4081 39 1 2.3873 -1.6228 3.5904 40 1 1.7322 -3.1375 5.1065 41 1 1.5889 -3.2462 6.8776 42 1 0.2109 -2.6754 5.9066 43 1 -0.8117 -0.8434 6.6724 44 1 -1.7974 0.1844 8.6803 45 1 3.0955 -0.2292 8.2677 46 1 0.8418 -2.4319 1.6314 47 1 0.7028 -5.7052 1.0042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496639172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:41 Heat of formation + Delta-G solvation = -122.522109 kcal Electronic energy + Delta-G solvation = -29764.561669 eV Core-core repulsion = 25389.365843 eV Total energy + Delta-G solvation = -4375.195826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.52184 -49.60543 -41.34816 -39.77171 -38.65689 -35.25941 -35.07513 -34.73740 -32.16365 -31.92228 -30.22912 -28.71376 -27.93803 -26.03478 -25.31978 -24.29594 -24.03367 -22.92558 -21.03506 -20.01796 -19.25865 -18.99524 -18.42165 -18.11428 -17.45312 -17.33988 -17.20157 -16.68390 -16.30053 -16.03102 -15.74416 -15.59180 -15.47654 -15.15303 -14.96780 -14.89985 -14.84770 -14.26155 -14.16710 -13.91217 -13.76749 -13.63937 -13.30759 -12.94149 -12.82649 -12.77305 -12.65642 -12.58734 -12.52839 -12.34601 -12.17791 -12.11873 -12.00140 -11.82558 -11.48208 -11.17654 -10.87621 -10.69559 -10.06494 -9.89110 -9.66120 -8.91920 -7.85764 -5.12790 -0.14990 0.01120 1.52966 1.54505 1.59365 1.70261 2.15803 2.53393 2.62078 2.76647 3.25506 3.40203 3.47596 3.57208 3.84762 3.93693 3.97687 4.05759 4.09120 4.19092 4.26410 4.28769 4.39521 4.48224 4.57150 4.67885 4.76684 4.80032 4.82314 4.89548 4.90407 4.94365 4.98737 5.03550 5.12385 5.19649 5.26546 5.31046 5.34475 5.40061 5.52710 5.59043 5.65275 5.71760 5.72047 6.34943 6.67134 7.31367 7.43597 8.16017 8.41367 9.36057 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.002668 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.321595 B =10492.896081 C =11637.218147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.172 3.828 5 H 0.055 0.945 6 C 0.120 3.880 7 N -0.709 5.709 8 C 0.514 3.486 9 O -0.576 6.576 10 C -0.063 4.063 11 H 0.134 0.866 12 C -0.139 4.139 13 C -0.047 4.047 14 C -0.070 4.070 15 C -0.123 4.123 16 C 0.050 3.950 17 F -0.139 7.139 18 C 0.050 3.950 19 F -0.138 7.138 20 C -0.112 4.112 21 N -0.723 5.723 22 C -0.230 4.230 23 H 0.073 0.927 24 C -0.064 4.064 25 N -0.961 5.961 26 Si 0.959 3.041 27 H -0.278 1.278 28 H -0.303 1.303 29 H -0.288 1.288 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.411 0.589 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.138 0.862 44 H 0.164 0.836 45 H 0.169 0.831 46 H 0.375 0.625 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 9.528 12.218 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.198 4.198 4 C 0.063 3.937 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.360 5.360 8 C 0.301 3.699 9 O -0.456 6.456 10 C -0.084 4.084 11 H 0.152 0.848 12 C -0.197 4.197 13 C -0.048 4.048 14 C -0.089 4.089 15 C -0.141 4.141 16 C 0.030 3.970 17 F -0.118 7.118 18 C 0.030 3.970 19 F -0.117 7.117 20 C -0.131 4.131 21 N -0.363 5.363 22 C -0.362 4.362 23 H 0.091 0.909 24 C -0.257 4.257 25 N -0.611 5.611 26 Si 0.790 3.210 27 H -0.204 1.204 28 H -0.230 1.230 29 H -0.214 1.214 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.247 0.753 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.156 0.844 44 H 0.182 0.818 45 H 0.187 0.813 46 H 0.207 0.793 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.211 10.179 12.265 15.985 hybrid contribution 0.231 -1.167 -0.294 1.225 sum 1.442 9.013 11.971 15.054 Atomic orbital electron populations 1.21721 0.95756 1.00544 1.01219 1.21630 0.96036 0.96322 0.99034 1.21829 1.01018 0.94856 1.02077 1.20642 0.97253 0.83927 0.91879 0.92737 1.21662 0.99568 0.95099 0.84085 1.45980 1.52466 1.31786 1.05737 1.20787 0.79568 0.84559 0.85027 1.90680 1.39138 1.28889 1.86885 1.20302 1.03713 0.95805 0.88612 0.84805 1.21798 1.01799 0.92134 1.03949 1.19352 0.93404 0.97644 0.94366 1.21046 0.94954 0.96426 0.96432 1.21231 1.01597 0.99129 0.92146 1.17900 0.90387 1.02199 0.86512 1.91489 1.86215 1.82735 1.51367 1.17741 0.86612 1.03663 0.88961 1.91495 1.72844 1.87153 1.60176 1.21115 1.02441 0.98298 0.91211 1.42496 1.28181 1.02670 1.62967 1.19448 1.03398 0.88953 1.24394 0.90870 1.25302 0.98930 0.98808 1.02649 1.69780 1.26050 1.15376 1.49925 0.85438 0.78538 0.78433 0.78618 1.20399 1.22950 1.21440 0.92441 0.92614 0.94843 0.93097 0.92146 0.92392 0.92213 0.90500 0.92468 0.75270 0.91558 0.89288 0.92442 0.84394 0.81799 0.81328 0.79290 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.60 71.98 0.62 -3.59 16 2 C -0.11 -3.37 2.87 -10.79 -0.03 -3.40 16 3 C -0.14 -3.36 8.95 71.98 0.64 -2.71 16 4 C 0.17 5.74 2.22 44.99 0.10 5.84 16 5 H 0.05 1.82 8.08 -2.39 -0.02 1.81 16 6 C 0.12 3.61 4.53 86.38 0.39 4.00 16 7 N -0.71 -20.13 5.28 -463.06 -2.45 -22.58 16 8 C 0.51 14.07 7.02 87.66 0.62 14.68 16 9 O -0.58 -19.17 15.08 -3.03 -0.05 -19.22 16 10 C -0.06 -1.28 2.90 -12.29 -0.04 -1.31 16 11 H 0.13 2.00 7.87 -2.39 -0.02 1.99 16 12 C -0.14 -2.79 8.91 71.98 0.64 -2.15 16 13 C -0.05 -0.98 4.40 -19.86 -0.09 -1.06 16 14 C -0.07 -1.52 7.92 22.27 0.18 -1.34 16 15 C -0.12 -2.48 10.02 22.31 0.22 -2.26 16 16 C 0.05 1.15 7.31 22.41 0.16 1.31 16 17 F -0.14 -3.41 17.18 44.97 0.77 -2.64 16 18 C 0.05 1.13 7.31 22.41 0.16 1.30 16 19 F -0.14 -3.31 17.18 44.97 0.77 -2.54 16 20 C -0.11 -2.16 9.65 22.31 0.22 -1.95 16 21 N -0.72 -30.84 4.01 -322.94 -1.30 -32.14 16 22 C -0.23 -11.20 9.93 84.03 0.83 -10.37 16 23 H 0.07 3.47 7.83 -2.91 -0.02 3.44 16 24 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 25 N -0.96 -53.52 13.06 21.65 0.28 -53.23 16 26 Si 0.96 42.88 29.55 68.60 2.03 44.91 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 29 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 30 H 0.06 1.66 6.23 -2.39 -0.01 1.65 16 31 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.03 1.24 7.75 -2.39 -0.02 1.22 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.35 6.68 -2.39 -0.02 1.34 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 37 H 0.08 2.14 6.81 -2.39 -0.02 2.13 16 38 H 0.06 1.88 6.06 -2.39 -0.01 1.87 16 39 H 0.41 11.79 7.55 -92.71 -0.70 11.09 16 40 H 0.07 1.53 7.56 -2.39 -0.02 1.51 16 41 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.06 1.24 7.40 -2.39 -0.02 1.22 16 43 H 0.14 3.00 7.51 -2.91 -0.02 2.98 16 44 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 45 H 0.17 2.34 7.94 -2.91 -0.02 2.32 16 46 H 0.37 17.67 7.80 -92.71 -0.72 16.95 16 47 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -60.30 390.88 4.75 -55.54 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.42 Total: 37.76 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 5.10 Total: -5.86 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -3.46 Total: -107.95 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.22 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.55 Total: -5.18 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -60.30 4.75 -55.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496639172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.978 kcal (2) G-P(sol) polarization free energy of solvation -60.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds