Wall clock time and date at job start Tue Mar 31 2020 23:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47597 * 2 1 4 4 C 1.50704 * 109.47226 * 239.99614 * 2 1 3 5 5 H 1.07992 * 120.00240 * 245.45349 * 4 2 1 6 6 C 1.37874 * 119.99619 * 65.45153 * 4 2 1 7 7 N 1.31513 * 120.00247 * 9.73764 * 6 4 2 8 8 Si 1.86803 * 119.99845 * 189.73887 * 6 4 2 9 9 H 1.48499 * 109.47132 * 84.99497 * 8 6 4 10 10 H 1.48495 * 109.47014 * 204.99425 * 8 6 4 11 11 H 1.48493 * 109.47052 * 324.99303 * 8 6 4 12 12 N 1.46900 * 109.47292 * 119.99993 * 2 1 3 13 13 C 1.46895 * 111.00286 * 58.94901 * 12 2 1 14 14 C 1.38588 * 111.00090 * 294.99900 * 12 2 1 15 15 N 1.31215 * 126.47061 * 359.97438 * 14 12 2 16 16 N 1.28530 * 109.86134 * 180.02562 * 15 14 12 17 17 C 1.30295 * 110.05153 * 359.97438 * 16 15 14 18 18 C 1.50697 * 126.34261 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47255 * 90.02570 * 18 17 16 20 20 C 1.35104 * 125.68414 * 124.97605 * 19 18 17 21 21 N 1.36843 * 107.17814 * 180.02562 * 20 19 18 22 22 C 1.36484 * 132.56863 * 179.97438 * 21 20 19 23 23 C 1.34951 * 120.60865 * 179.97438 * 22 21 20 24 24 C 1.40470 * 120.30016 * 0.06878 * 23 22 21 25 25 C 1.36022 * 119.69813 * 359.96701 * 24 23 22 26 26 C 1.37081 * 106.99537 * 0.02562 * 21 20 19 27 27 N 1.32556 * 108.03778 * 359.97438 * 26 21 20 28 28 N 1.36456 * 126.47804 * 180.28640 * 14 12 2 29 29 C 1.46504 * 127.13487 * 0.02562 * 28 14 12 30 30 H 1.09005 * 109.47363 * 302.42859 * 1 2 3 31 31 H 1.08991 * 109.47449 * 62.42947 * 1 2 3 32 32 H 1.08999 * 109.47090 * 182.43412 * 1 2 3 33 33 H 0.96996 * 120.00313 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47469 * 296.04947 * 13 12 2 35 35 H 1.09003 * 109.46764 * 56.05154 * 13 12 2 36 36 H 1.09003 * 109.47733 * 176.04628 * 13 12 2 37 37 H 1.08996 * 109.47547 * 330.02586 * 18 17 16 38 38 H 1.08998 * 109.46943 * 210.02513 * 18 17 16 39 39 H 1.08001 * 126.41684 * 0.06271 * 20 19 18 40 40 H 1.07999 * 119.69475 * 0.02562 * 22 21 20 41 41 H 1.07997 * 119.85318 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.15725 * 180.23914 * 24 23 22 43 43 H 1.07999 * 120.34245 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.46668 * 270.19687 * 29 28 14 45 45 H 1.09003 * 109.46704 * 30.19344 * 29 28 14 46 46 H 1.08996 * 109.46995 * 150.19537 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5786 -1.6370 -1.1338 6 6 1.7944 -0.1776 -2.4796 7 7 1.3022 1.0366 -2.5936 8 14 2.1711 -1.1803 -4.0100 9 1 1.0163 -2.0603 -4.3219 10 1 2.4188 -0.2650 -5.1528 11 1 3.3776 -2.0126 -3.7719 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0760 1.2461 14 6 1.6697 -0.0022 2.3491 15 7 0.9941 1.1210 2.4093 16 7 0.8503 1.4789 3.6354 17 6 1.4204 0.6121 4.4236 18 6 1.4721 0.6722 5.9285 19 6 0.2753 -0.0423 6.5013 20 6 0.3150 -1.0527 7.3973 21 7 -0.9790 -1.4164 7.6540 22 6 -1.5273 -2.3663 8.4663 23 6 -2.8661 -2.5207 8.5366 24 6 -3.7148 -1.7041 7.7711 25 6 -3.1816 -0.7540 6.9568 26 6 -1.7814 -0.6047 6.8948 27 7 -1.0009 0.2170 6.2073 28 7 1.9677 -0.3592 3.6320 29 6 2.7166 -1.5395 4.0704 30 1 -0.3634 0.5511 0.8674 31 1 -0.3634 0.4756 -0.9109 32 1 -0.3633 -1.0267 0.0436 33 1 1.1344 1.4114 -3.4724 34 1 0.4419 -2.0730 1.3349 35 1 1.8167 -2.5950 0.3320 36 1 1.9617 -2.5868 2.1060 37 1 1.4624 1.7133 6.2511 38 1 2.3850 0.1914 6.2801 39 1 1.2020 -1.4911 7.8304 40 1 -0.8838 -2.9996 9.0589 41 1 -3.2869 -3.2760 9.1838 42 1 -4.7861 -1.8271 7.8320 43 1 -3.8244 -0.1202 6.3640 44 1 2.0272 -2.3685 4.2302 45 1 3.4432 -1.8135 3.3054 46 1 3.2366 -1.3147 5.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519480589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:32 Heat of formation + Delta-G solvation = 199.129048 kcal Electronic energy + Delta-G solvation = -29338.587920 eV Core-core repulsion = 25460.321872 eV Total energy + Delta-G solvation = -3878.266048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.03189 -42.30108 -37.84157 -37.24363 -34.65472 -33.93749 -33.02608 -32.29794 -29.87649 -29.08169 -28.71816 -27.67032 -26.82242 -25.10597 -24.90805 -23.56027 -22.93753 -21.76163 -21.31283 -19.99952 -19.34955 -18.03923 -17.10309 -16.59205 -16.24576 -16.14397 -15.89078 -15.68443 -15.39542 -14.92233 -14.54981 -14.38780 -14.20937 -13.75369 -13.56205 -13.33111 -13.07258 -12.89038 -12.74714 -12.36737 -12.22108 -12.05474 -11.80392 -11.53893 -11.30821 -11.27586 -11.02901 -10.87739 -10.73631 -10.45767 -10.18906 -10.14213 -9.99365 -9.67492 -9.54013 -8.99421 -8.89471 -8.86121 -8.32799 -8.10474 -7.25471 -6.01771 -4.04829 0.46197 1.00111 2.24298 2.41493 2.61113 2.82265 3.30893 3.32007 3.38452 3.40146 3.57659 3.93011 4.12862 4.37410 4.38758 4.53672 4.67324 4.73128 4.76970 4.80213 4.90829 4.99881 5.11678 5.18585 5.31530 5.36524 5.44194 5.50011 5.60265 5.69026 5.73070 5.86385 5.96898 6.05381 6.18894 6.27677 6.36483 6.42394 6.54829 6.82081 6.83396 7.07348 7.12245 7.21319 7.52539 7.67056 7.75741 7.80350 8.03648 8.20853 8.51280 8.96413 9.53478 9.58549 11.07457 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.002613 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.668718 B =10714.686002 C =11069.688727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.228 3.772 3 H 0.063 0.937 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.881 5.881 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.450 5.450 13 C 0.030 3.970 14 C 0.384 3.616 15 N -0.316 5.316 16 N -0.265 5.265 17 C 0.152 3.848 18 C 0.059 3.941 19 C 0.071 3.929 20 C -0.098 4.098 21 N -0.363 5.363 22 C 0.053 3.947 23 C -0.144 4.144 24 C -0.109 4.109 25 C -0.072 4.072 26 C 0.220 3.780 27 N -0.462 5.462 28 N -0.493 5.493 29 C 0.082 3.918 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.033 0.967 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.183 0.817 40 H 0.161 0.839 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.151 0.849 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -10.694 26.413 28.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.124 3.876 3 H 0.080 0.920 4 C -0.556 4.556 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.518 5.518 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.173 5.173 13 C -0.118 4.118 14 C 0.029 3.971 15 N -0.161 5.161 16 N -0.104 5.104 17 C -0.116 4.116 18 C 0.018 3.982 19 C -0.064 4.064 20 C -0.229 4.229 21 N -0.035 5.035 22 C -0.069 4.069 23 C -0.164 4.164 24 C -0.133 4.133 25 C -0.092 4.092 26 C -0.023 4.023 27 N -0.181 5.181 28 N -0.191 5.191 29 C -0.061 4.061 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.131 0.869 38 H 0.112 0.888 39 H 0.200 0.800 40 H 0.178 0.822 41 H 0.167 0.833 42 H 0.159 0.841 43 H 0.169 0.831 44 H 0.087 0.913 45 H 0.112 0.888 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.165 -8.764 25.203 27.006 hybrid contribution 0.478 -2.484 0.109 2.532 sum -3.687 -11.248 25.312 27.943 Atomic orbital electron populations 1.22355 0.99551 0.98570 1.02087 1.19379 0.90718 0.95374 0.82168 0.91952 1.20994 1.36509 1.08467 0.89655 0.91860 1.24892 0.95269 0.94640 0.98873 1.69999 1.44172 1.13665 1.23965 0.86567 0.78591 0.80002 0.82562 1.20612 1.21243 1.19942 1.59306 1.55624 1.02915 0.99442 1.22452 0.98210 0.88346 1.02763 1.23296 0.95155 0.94807 0.83854 1.74865 1.17899 1.12301 1.11029 1.73967 1.17077 1.22848 0.96508 1.23861 1.02850 0.89946 0.94934 1.18107 0.93008 1.02278 0.84769 1.20592 0.93092 0.96095 0.96631 1.22339 0.85686 1.05460 1.09395 1.42846 1.07840 1.24014 1.28802 1.21581 0.95628 0.93474 0.96236 1.20801 0.91552 1.01945 1.02149 1.21025 1.00814 0.95190 0.96236 1.20367 0.89660 0.99423 0.99774 1.21089 0.93462 0.92654 0.95121 1.70795 1.00998 1.23414 1.22876 1.45994 1.44996 1.21734 1.06342 1.21953 0.96428 0.85921 1.01848 0.93785 0.90892 0.95871 0.92726 0.94877 0.88682 0.93393 0.86898 0.88811 0.80013 0.82166 0.83334 0.84056 0.83085 0.91317 0.88837 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 8.39 37.15 0.31 -4.06 16 2 C 0.23 6.06 1.89 -68.87 -0.13 5.93 16 3 H 0.06 1.91 7.89 -51.93 -0.41 1.50 16 4 C -0.52 -14.21 7.93 -34.44 -0.27 -14.49 16 5 H 0.06 1.68 6.57 -52.49 -0.35 1.33 16 6 C 0.07 1.86 5.18 -17.82 -0.09 1.76 16 7 N -0.88 -25.95 12.17 55.43 0.67 -25.27 16 8 Si 0.90 21.27 29.55 -169.99 -5.02 16.25 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.45 -10.21 4.80 -176.08 -0.85 -11.05 16 13 C 0.03 0.57 8.61 60.06 0.52 1.09 16 14 C 0.38 8.48 6.76 -318.86 -2.16 6.32 16 15 N -0.32 -7.80 9.32 30.32 0.28 -7.51 16 16 N -0.27 -5.91 12.18 32.99 0.40 -5.51 16 17 C 0.15 2.67 7.28 -154.02 -1.12 1.55 16 18 C 0.06 0.72 6.15 -29.04 -0.18 0.54 16 19 C 0.07 0.92 6.32 -82.98 -0.52 0.40 16 20 C -0.10 -0.97 11.63 -16.43 -0.19 -1.16 16 21 N -0.36 -3.78 2.95 -62.66 -0.18 -3.96 16 22 C 0.05 0.36 10.95 -16.65 -0.18 0.18 16 23 C -0.14 -0.83 9.99 -39.91 -0.40 -1.23 16 24 C -0.11 -0.77 10.07 -39.54 -0.40 -1.17 16 25 C -0.07 -0.74 10.11 -39.35 -0.40 -1.14 16 26 C 0.22 2.91 7.81 -156.04 -1.22 1.69 16 27 N -0.46 -7.44 11.28 -9.00 -0.10 -7.54 16 28 N -0.49 -8.56 3.21 -121.46 -0.39 -8.94 16 29 C 0.08 0.95 9.34 59.85 0.56 1.51 16 30 H 0.04 1.17 5.93 -51.93 -0.31 0.86 16 31 H 0.07 2.06 6.86 -51.93 -0.36 1.70 16 32 H 0.02 0.56 6.34 -51.93 -0.33 0.23 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.03 0.66 6.45 -51.93 -0.34 0.33 16 35 H 0.09 1.85 6.32 -51.93 -0.33 1.52 16 36 H 0.05 0.74 5.44 -51.93 -0.28 0.45 16 37 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 0.75 7.22 -51.93 -0.37 0.38 16 39 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.15 0.38 8.06 -52.49 -0.42 -0.05 16 42 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 43 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 44 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 45 H 0.09 1.10 7.60 -51.93 -0.39 0.70 16 46 H 0.08 0.66 7.24 -51.93 -0.38 0.28 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -38.01 373.62 -11.35 -49.36 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.92 Total: 0.83 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -5.87 Total: -2.26 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -0.16 Total: -69.80 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.01 -11.35 -49.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519480589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.487 kcal (2) G-P(sol) polarization free energy of solvation -38.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 199.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds