Wall clock time and date at job start Wed Apr 1 2020 00:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47263 * 2 1 4 4 C 1.36936 * 120.00097 * 275.31370 * 3 2 1 5 5 H 1.07997 * 120.00360 * 37.57540 * 4 3 2 6 6 C 1.38820 * 119.99942 * 217.57752 * 4 3 2 7 7 N 1.31620 * 119.99755 * 21.42531 * 6 4 3 8 8 Si 1.86800 * 119.99972 * 201.42389 * 6 4 3 9 9 H 1.48495 * 109.47413 * 60.00030 * 8 6 4 10 10 H 1.48498 * 109.46848 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46988 * 299.99606 * 8 6 4 12 12 C 1.46503 * 120.00019 * 95.30947 * 3 2 1 13 13 C 1.52993 * 109.47091 * 270.00252 * 12 3 2 14 14 C 1.53000 * 109.47039 * 180.02562 * 13 12 3 15 15 N 1.46499 * 109.47348 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00235 * 179.97438 * 15 14 13 17 17 O 1.21277 * 119.99823 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00084 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.47116 * 180.02562 * 18 16 15 20 20 C 1.50708 * 109.47087 * 180.02562 * 19 18 16 21 21 C 1.38259 * 120.00074 * 264.97824 * 20 19 18 22 22 C 1.38211 * 120.06994 * 180.02562 * 21 20 19 23 23 C 1.38254 * 120.06885 * 0.02562 * 22 21 20 24 24 C 1.38364 * 120.00411 * 359.97438 * 23 22 21 25 25 F 1.35102 * 120.03603 * 179.97438 * 24 23 22 26 26 C 1.38366 * 119.99892 * 85.00378 * 20 19 18 27 27 F 1.35100 * 120.03435 * 0.24848 * 26 20 19 28 28 H 1.08996 * 109.47265 * 60.00005 * 1 2 3 29 29 H 1.09002 * 109.47104 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46903 * 299.99565 * 1 2 3 31 31 H 1.09007 * 109.47165 * 239.99932 * 2 1 3 32 32 H 1.09003 * 109.47586 * 120.00608 * 2 1 3 33 33 H 0.96999 * 119.99913 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47092 * 150.00281 * 12 3 2 35 35 H 1.08997 * 109.46885 * 30.00468 * 12 3 2 36 36 H 1.09001 * 109.47129 * 60.00052 * 13 12 3 37 37 H 1.09005 * 109.47445 * 299.99541 * 13 12 3 38 38 H 1.08997 * 109.47664 * 59.99435 * 14 13 12 39 39 H 1.09010 * 109.47123 * 299.99566 * 14 13 12 40 40 H 0.97001 * 119.99852 * 359.97438 * 15 14 13 41 41 H 1.09001 * 109.46866 * 60.00531 * 18 16 15 42 42 H 1.08997 * 109.47537 * 300.00457 * 18 16 15 43 43 H 1.09001 * 109.46930 * 60.00434 * 19 18 16 44 44 H 1.08996 * 109.47342 * 300.00014 * 19 18 16 45 45 H 1.08000 * 119.96591 * 0.02562 * 21 20 19 46 46 H 1.08002 * 119.96523 * 179.97438 * 22 21 20 47 47 H 1.08006 * 119.99549 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2112 2.9289 -1.3728 7 7 4.3027 2.7980 -0.6491 8 14 3.0994 4.2795 -2.6584 9 1 1.9628 5.1786 -2.3344 10 1 4.3623 5.0607 -2.6668 11 1 2.8845 3.6726 -3.9966 12 6 2.3732 2.0326 1.2633 13 6 1.1427 2.7381 1.8366 14 6 1.5134 3.4191 3.1556 15 7 0.3350 4.0941 3.7049 16 6 0.4248 4.7650 4.8704 17 8 1.4813 4.8102 5.4641 18 6 -0.7874 5.4599 5.4351 19 6 -0.4166 6.1407 6.7541 20 6 -1.6289 6.8351 7.3192 21 6 -1.8368 8.1784 7.0662 22 6 -2.9479 8.8168 7.5842 23 6 -3.8534 8.1136 8.3567 24 6 -3.6483 6.7692 8.6117 25 9 -4.5326 6.0815 9.3670 26 6 -2.5337 6.1284 8.0916 27 9 -2.3283 4.8172 8.3438 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.0489 3.4031 -0.7830 34 1 3.1617 2.7641 1.0860 35 1 2.7256 1.2833 1.9721 36 1 0.3542 2.0067 2.0139 37 1 0.7903 3.4876 1.1278 38 1 2.3018 4.1505 2.9779 39 1 1.8660 2.6699 3.8647 40 1 -0.5099 4.0583 3.2297 41 1 -1.5758 4.7284 5.6124 42 1 -1.1397 6.2093 4.7263 43 1 0.3717 6.8723 6.5764 44 1 -0.0640 5.3916 7.4631 45 1 -1.1303 8.7294 6.4633 46 1 -3.1084 9.8662 7.3859 47 1 -4.7215 8.6135 8.7605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566577458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:12 Heat of formation + Delta-G solvation = -102.397462 kcal Electronic energy + Delta-G solvation = -28421.072378 eV Core-core repulsion = 24046.749223 eV Total energy + Delta-G solvation = -4374.323156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.81385 -48.89146 -39.89468 -39.22526 -36.47420 -34.88024 -34.29166 -31.86842 -31.43389 -30.74969 -30.07662 -28.49389 -25.96252 -24.66490 -23.43303 -23.26074 -21.92157 -21.03464 -20.42096 -19.83831 -18.28590 -17.70447 -17.43357 -16.83241 -16.71971 -16.57804 -15.79876 -15.57760 -15.29009 -15.26436 -15.02168 -14.77766 -14.41406 -14.15492 -13.80077 -13.73512 -13.43772 -13.22590 -12.92948 -12.85526 -12.58182 -12.43149 -12.36463 -12.11810 -11.60368 -11.54816 -11.43303 -11.31610 -11.14216 -11.02212 -10.74797 -10.58453 -10.48653 -10.06819 -9.83424 -9.64923 -9.53975 -9.30622 -9.17906 -8.84171 -8.47434 -6.56668 -5.78939 -3.38171 0.47967 0.49374 2.72048 2.86759 3.28068 3.34844 3.39349 3.41689 3.42690 3.94594 4.07695 4.24663 4.46243 4.48022 4.61403 4.66777 4.82235 4.95426 5.24105 5.25807 5.28414 5.35989 5.40542 5.41763 5.53034 5.65960 5.70796 5.81671 5.84718 5.88885 5.98609 6.08671 6.28786 6.30235 6.35605 6.42706 6.48062 6.58771 6.75027 6.78591 6.91126 7.09153 7.17532 7.64336 7.67636 7.81682 8.32667 8.52174 9.19441 9.81808 10.40935 11.20557 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.001916 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.647462 B =14607.681245 C =15354.411814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.120 3.880 15 N -0.725 5.725 16 C 0.509 3.491 17 O -0.545 6.545 18 C -0.137 4.137 19 C -0.067 4.067 20 C -0.086 4.086 21 C -0.097 4.097 22 C -0.098 4.098 23 C -0.132 4.132 24 C 0.068 3.932 25 F -0.130 7.130 26 C 0.069 3.931 27 F -0.124 7.124 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.256 0.744 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.399 0.601 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.176 11.167 17.196 26.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.210 1.210 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.004 4.004 15 N -0.376 5.376 16 C 0.294 3.706 17 O -0.422 6.422 18 C -0.177 4.177 19 C -0.104 4.104 20 C -0.087 4.087 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.151 4.151 24 C 0.048 3.952 25 F -0.108 7.108 26 C 0.049 3.951 27 F -0.103 7.103 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.233 0.767 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.160 0.840 46 H 0.159 0.841 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.223 11.160 17.628 25.827 hybrid contribution -0.781 0.352 -0.693 1.102 sum -16.004 11.513 16.935 25.990 Atomic orbital electron populations 1.22368 1.00185 0.98888 1.01081 1.20848 0.91659 0.87411 0.98724 1.43736 1.76061 1.08177 1.02489 1.18935 1.04638 1.21293 0.94181 0.92394 1.25197 0.94211 1.01324 0.98082 1.69992 1.03164 1.37293 1.42385 0.86482 0.76889 0.82384 0.81685 1.20950 1.21611 1.20732 1.20795 0.94444 0.96649 0.85757 1.22535 1.02364 0.99868 0.93914 1.21488 0.87110 0.96135 0.95627 1.46204 1.14555 1.53632 1.23233 1.20514 0.90029 0.79003 0.81014 1.90707 1.30472 1.61315 1.59740 1.21639 0.97407 1.00972 0.97656 1.20321 0.93607 1.00431 0.96065 1.19969 0.96497 0.94613 0.97582 1.21130 0.98029 0.92971 0.99422 1.21111 0.93479 1.00671 0.96322 1.21110 1.01709 0.91554 1.00744 1.17719 0.89191 0.91237 0.97103 1.91539 1.66508 1.79382 1.73375 1.17589 0.96078 0.79421 1.02027 1.91543 1.94602 1.31573 1.92558 0.93285 0.94635 0.93821 0.93895 0.94841 0.93449 0.88754 0.95687 0.93080 0.91742 0.91513 0.92032 0.76736 0.88863 0.88534 0.88913 0.89365 0.83978 0.84105 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.21 37.16 0.38 -2.56 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.90 16 3 N -0.58 -14.12 2.43 -173.24 -0.42 -14.54 16 4 C -0.26 -6.94 9.45 -15.06 -0.14 -7.08 16 5 H 0.06 1.55 7.92 -52.49 -0.42 1.13 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.25 16 7 N -0.89 -25.13 11.47 55.49 0.64 -24.50 16 8 Si 0.90 21.15 29.61 -169.99 -5.03 16.12 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 C 0.15 3.38 5.33 -4.04 -0.02 3.36 16 13 C -0.15 -2.66 5.65 -26.73 -0.15 -2.82 16 14 C 0.12 1.98 5.67 -4.04 -0.02 1.96 16 15 N -0.73 -9.75 5.56 -60.29 -0.33 -10.09 16 16 C 0.51 6.91 7.83 -10.99 -0.09 6.83 16 17 O -0.54 -9.56 15.98 5.56 0.09 -9.47 16 18 C -0.14 -1.27 5.68 -27.88 -0.16 -1.43 16 19 C -0.07 -0.62 4.41 -27.88 -0.12 -0.75 16 20 C -0.09 -0.70 5.14 -104.56 -0.54 -1.24 16 21 C -0.10 -0.59 9.68 -39.58 -0.38 -0.97 16 22 C -0.10 -0.49 10.04 -39.59 -0.40 -0.89 16 23 C -0.13 -0.81 10.02 -39.53 -0.40 -1.21 16 24 C 0.07 0.60 7.31 -39.37 -0.29 0.31 16 25 F -0.13 -1.32 17.18 2.25 0.04 -1.28 16 26 C 0.07 0.67 7.25 -39.37 -0.29 0.38 16 27 F -0.12 -1.42 16.48 2.25 0.04 -1.39 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.75 6.64 -51.93 -0.34 0.40 16 31 H 0.04 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.09 2.43 5.52 -51.93 -0.29 2.14 16 35 H 0.02 0.54 7.86 -51.93 -0.41 0.13 16 36 H 0.05 0.88 6.64 -51.93 -0.34 0.53 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 40 H 0.40 4.33 8.47 -40.82 -0.35 3.99 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.85 8.01 -51.93 -0.42 0.43 16 44 H 0.09 0.96 7.74 -51.93 -0.40 0.56 16 45 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 46 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 47 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -31.62 399.30 -8.85 -40.47 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.15 Total: 1.61 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.73 Total: -2.95 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.12 Total: -49.13 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.08 Total: -2.66 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.62 -8.85 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566577458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.928 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds