Wall clock time and date at job start Wed Apr 1 2020 00:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47263 * 2 1 4 4 C 1.36936 * 120.00097 * 275.31370 * 3 2 1 5 5 H 1.07997 * 120.00360 * 37.57540 * 4 3 2 6 6 C 1.38820 * 119.99942 * 217.57752 * 4 3 2 7 7 N 1.31620 * 119.99755 * 21.42531 * 6 4 3 8 8 Si 1.86800 * 119.99972 * 201.42389 * 6 4 3 9 9 H 1.48495 * 109.47413 * 60.00030 * 8 6 4 10 10 H 1.48498 * 109.46848 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46988 * 299.99606 * 8 6 4 12 12 C 1.46503 * 120.00019 * 95.30947 * 3 2 1 13 13 C 1.52993 * 109.47091 * 270.00252 * 12 3 2 14 14 C 1.53000 * 109.47039 * 180.02562 * 13 12 3 15 15 N 1.46499 * 109.47348 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00235 * 179.97438 * 15 14 13 17 17 O 1.21277 * 119.99823 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00084 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.47116 * 180.02562 * 18 16 15 20 20 C 1.50708 * 109.47087 * 180.02562 * 19 18 16 21 21 C 1.38259 * 120.00074 * 264.97824 * 20 19 18 22 22 C 1.38211 * 120.06994 * 180.02562 * 21 20 19 23 23 C 1.38254 * 120.06885 * 0.02562 * 22 21 20 24 24 C 1.38364 * 120.00411 * 359.97438 * 23 22 21 25 25 F 1.35102 * 120.03603 * 179.97438 * 24 23 22 26 26 C 1.38366 * 119.99892 * 85.00378 * 20 19 18 27 27 F 1.35100 * 120.03435 * 0.24848 * 26 20 19 28 28 H 1.08996 * 109.47265 * 60.00005 * 1 2 3 29 29 H 1.09002 * 109.47104 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46903 * 299.99565 * 1 2 3 31 31 H 1.09007 * 109.47165 * 239.99932 * 2 1 3 32 32 H 1.09003 * 109.47586 * 120.00608 * 2 1 3 33 33 H 0.96999 * 119.99913 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47092 * 150.00281 * 12 3 2 35 35 H 1.08997 * 109.46885 * 30.00468 * 12 3 2 36 36 H 1.09001 * 109.47129 * 60.00052 * 13 12 3 37 37 H 1.09005 * 109.47445 * 299.99541 * 13 12 3 38 38 H 1.08997 * 109.47664 * 59.99435 * 14 13 12 39 39 H 1.09010 * 109.47123 * 299.99566 * 14 13 12 40 40 H 0.97001 * 119.99852 * 359.97438 * 15 14 13 41 41 H 1.09001 * 109.46866 * 60.00531 * 18 16 15 42 42 H 1.08997 * 109.47537 * 300.00457 * 18 16 15 43 43 H 1.09001 * 109.46930 * 60.00434 * 19 18 16 44 44 H 1.08996 * 109.47342 * 300.00014 * 19 18 16 45 45 H 1.08000 * 119.96591 * 0.02562 * 21 20 19 46 46 H 1.08002 * 119.96523 * 179.97438 * 22 21 20 47 47 H 1.08006 * 119.99549 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2112 2.9289 -1.3728 7 7 4.3027 2.7980 -0.6491 8 14 3.0994 4.2795 -2.6584 9 1 1.9628 5.1786 -2.3344 10 1 4.3623 5.0607 -2.6668 11 1 2.8845 3.6726 -3.9966 12 6 2.3732 2.0326 1.2633 13 6 1.1427 2.7381 1.8366 14 6 1.5134 3.4191 3.1556 15 7 0.3350 4.0941 3.7049 16 6 0.4248 4.7650 4.8704 17 8 1.4813 4.8102 5.4641 18 6 -0.7874 5.4599 5.4351 19 6 -0.4166 6.1407 6.7541 20 6 -1.6289 6.8351 7.3192 21 6 -1.8368 8.1784 7.0662 22 6 -2.9479 8.8168 7.5842 23 6 -3.8534 8.1136 8.3567 24 6 -3.6483 6.7692 8.6117 25 9 -4.5326 6.0815 9.3670 26 6 -2.5337 6.1284 8.0916 27 9 -2.3283 4.8172 8.3438 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.0489 3.4031 -0.7830 34 1 3.1617 2.7641 1.0860 35 1 2.7256 1.2833 1.9721 36 1 0.3542 2.0067 2.0139 37 1 0.7903 3.4876 1.1278 38 1 2.3018 4.1505 2.9779 39 1 1.8660 2.6699 3.8647 40 1 -0.5099 4.0583 3.2297 41 1 -1.5758 4.7284 5.6124 42 1 -1.1397 6.2093 4.7263 43 1 0.3717 6.8723 6.5764 44 1 -0.0640 5.3916 7.4631 45 1 -1.1303 8.7294 6.4633 46 1 -3.1084 9.8662 7.3859 47 1 -4.7215 8.6135 8.7605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566577458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:12 Heat of formation + Delta-G solvation = -119.669659 kcal Electronic energy + Delta-G solvation = -28421.821357 eV Core-core repulsion = 24046.749223 eV Total energy + Delta-G solvation = -4375.072135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.51602 -49.60771 -40.87780 -39.93156 -38.19214 -36.22003 -35.07055 -33.80930 -32.81804 -31.27472 -30.93788 -30.09038 -27.32508 -26.02245 -24.84923 -23.80635 -22.72150 -22.44058 -22.02613 -21.13577 -18.93597 -18.61299 -18.31898 -18.23658 -17.61647 -17.35113 -17.08661 -16.80470 -16.71443 -16.03186 -15.96860 -15.74145 -15.57619 -15.43193 -15.22879 -14.89137 -14.45904 -14.31529 -14.08742 -14.00319 -13.70607 -13.61944 -13.23729 -13.15562 -12.93144 -12.76758 -12.70915 -12.67286 -12.53991 -12.34149 -12.14879 -12.13094 -12.05893 -11.92596 -11.46913 -11.24489 -10.95242 -10.48069 -10.08900 -9.88958 -9.75236 -8.53712 -7.79803 -5.44141 -0.06805 -0.02576 1.47276 1.49240 1.56073 1.63450 2.17642 2.42721 2.52645 2.78650 3.25007 3.31134 3.47883 3.67795 3.75266 3.82057 3.92138 4.10664 4.17118 4.19191 4.23769 4.35915 4.45186 4.55133 4.58092 4.65521 4.74268 4.78511 4.82107 4.88909 4.95100 5.01221 5.02637 5.04830 5.10524 5.16520 5.22247 5.33540 5.33616 5.45177 5.47761 5.60557 5.70463 5.78376 5.84853 6.49135 6.57212 7.19755 7.25649 7.89522 8.42566 9.14952 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.001916 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.647462 B =14607.681245 C =15354.411814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.264 4.264 5 H 0.055 0.945 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.275 1.275 10 H -0.296 1.296 11 H -0.276 1.276 12 C 0.150 3.850 13 C -0.122 4.122 14 C 0.132 3.868 15 N -0.717 5.717 16 C 0.506 3.494 17 O -0.588 6.588 18 C -0.125 4.125 19 C -0.063 4.063 20 C -0.091 4.091 21 C -0.092 4.092 22 C -0.084 4.084 23 C -0.125 4.125 24 C 0.044 3.956 25 F -0.144 7.144 26 C 0.042 3.958 27 F -0.145 7.145 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.415 0.585 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.166 0.834 46 H 0.178 0.822 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.675 13.128 17.021 28.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.395 4.395 5 H 0.073 0.927 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.222 1.222 11 H -0.202 1.202 12 C 0.023 3.977 13 C -0.162 4.162 14 C 0.008 3.992 15 N -0.369 5.369 16 C 0.294 3.706 17 O -0.469 6.469 18 C -0.164 4.164 19 C -0.101 4.101 20 C -0.092 4.092 21 C -0.109 4.109 22 C -0.102 4.102 23 C -0.143 4.143 24 C 0.025 3.975 25 F -0.123 7.123 26 C 0.022 3.978 27 F -0.123 7.123 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.251 0.749 41 H 0.123 0.877 42 H 0.145 0.855 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.183 0.817 46 H 0.195 0.805 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.782 13.107 17.447 28.149 hybrid contribution 0.002 -0.282 -0.608 0.671 sum -17.780 12.825 16.839 27.643 Atomic orbital electron populations 1.22166 0.97222 1.00756 1.00855 1.20999 0.93881 0.85768 0.98547 1.43982 1.76479 1.09517 1.02302 1.19145 1.04123 1.21340 0.94866 0.92709 1.25887 0.93970 1.03406 1.00223 1.70132 1.03774 1.38098 1.44257 0.85527 0.76589 0.79833 0.79631 1.20133 1.22188 1.20162 1.20703 0.95385 0.96074 0.85521 1.22155 1.00555 0.99519 0.93990 1.21111 0.87808 0.95510 0.94808 1.46040 1.14215 1.53231 1.23433 1.21270 0.90721 0.78264 0.80300 1.90692 1.32570 1.62805 1.60847 1.21635 0.95235 1.01538 0.98016 1.20217 0.94344 0.99968 0.95541 1.19887 0.95750 0.95526 0.98060 1.21466 0.98654 0.91897 0.98920 1.21542 0.92091 1.02117 0.94452 1.21473 1.02552 0.90269 1.00025 1.18056 0.89166 0.92389 0.97934 1.91494 1.66954 1.79942 1.73919 1.17916 0.97316 0.78939 1.03623 1.91481 1.94853 1.33059 1.92942 0.94408 0.91717 0.93043 0.95297 0.93851 0.94004 0.92202 0.95636 0.91312 0.92809 0.93715 0.92603 0.74882 0.87732 0.85470 0.88757 0.91851 0.81661 0.80471 0.81425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 10.21 71.98 0.73 -4.27 16 2 C 0.13 5.47 6.44 86.38 0.56 6.03 16 3 N -0.60 -29.11 2.43 -702.00 -1.71 -30.82 16 4 C -0.26 -14.12 9.45 84.04 0.79 -13.33 16 5 H 0.06 2.92 7.92 -2.91 -0.02 2.89 16 6 C -0.04 -2.05 4.95 84.86 0.42 -1.63 16 7 N -0.92 -53.43 11.47 21.65 0.25 -53.19 16 8 Si 0.96 43.75 29.61 68.60 2.03 45.78 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.15 6.83 5.33 86.38 0.46 7.29 16 13 C -0.12 -4.37 5.65 30.59 0.17 -4.20 16 14 C 0.13 4.38 5.67 86.38 0.49 4.87 16 15 N -0.72 -18.47 5.56 -463.06 -2.57 -21.04 16 16 C 0.51 13.40 7.83 87.66 0.69 14.08 16 17 O -0.59 -20.95 15.98 -3.02 -0.05 -21.00 16 18 C -0.12 -2.11 5.68 29.85 0.17 -1.94 16 19 C -0.06 -1.13 4.41 29.85 0.13 -1.00 16 20 C -0.09 -1.37 5.14 -19.83 -0.10 -1.47 16 21 C -0.09 -0.80 9.68 22.27 0.22 -0.58 16 22 C -0.08 -0.50 10.04 22.27 0.22 -0.27 16 23 C -0.12 -1.18 10.02 22.30 0.22 -0.95 16 24 C 0.04 0.75 7.31 22.41 0.16 0.91 16 25 F -0.14 -2.95 17.18 44.97 0.77 -2.18 16 26 C 0.04 0.80 7.25 22.41 0.16 0.96 16 27 F -0.14 -3.46 16.48 44.97 0.74 -2.72 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.62 6.64 -2.39 -0.02 1.60 16 31 H 0.03 1.24 8.08 -2.38 -0.02 1.22 16 32 H 0.04 1.67 7.83 -2.39 -0.02 1.65 16 33 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.06 3.19 5.52 -2.39 -0.01 3.18 16 35 H 0.03 1.12 7.86 -2.39 -0.02 1.10 16 36 H 0.07 2.23 6.64 -2.39 -0.02 2.21 16 37 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.41 8.09 8.47 -92.71 -0.79 7.31 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.09 1.64 8.01 -2.39 -0.02 1.62 16 44 H 0.06 1.45 7.74 -2.39 -0.02 1.43 16 45 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 46 H 0.18 -0.18 8.06 -2.91 -0.02 -0.21 16 47 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -71.39 399.30 5.16 -66.23 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.20 Total: 14.46 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.50 Total: 4.48 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -4.03 Total: -105.05 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 1.51 Total: -4.90 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -71.39 5.16 -66.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566577458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.443 kcal (2) G-P(sol) polarization free energy of solvation -71.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds