Wall clock time and date at job start Tue Mar 31 2020 23:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46375 * 2 1 4 4 C 1.50696 * 109.47082 * 240.00224 * 2 1 3 5 5 O 1.21282 * 119.99673 * 239.99762 * 4 2 1 6 6 N 1.34773 * 120.00627 * 59.99576 * 4 2 1 7 7 C 1.46504 * 119.99471 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00542 * 179.97438 * 6 4 2 9 9 C 1.50708 * 109.46722 * 90.00486 * 8 6 4 10 10 H 1.07997 * 120.00001 * 359.97438 * 9 8 6 11 11 C 1.37873 * 119.99794 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00459 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99684 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46944 * 59.99901 * 13 11 9 15 15 H 1.48501 * 109.46986 * 299.99801 * 13 11 9 16 16 H 1.48498 * 109.46785 * 180.02562 * 13 11 9 17 17 N 1.46901 * 109.47186 * 119.99946 * 2 1 3 18 18 C 1.48766 * 110.99963 * 304.83300 * 17 2 1 19 19 C 1.55465 * 103.62597 * 199.33022 * 18 17 2 20 20 H 1.09002 * 109.93983 * 147.32957 * 19 18 17 21 21 C 1.51696 * 107.63192 * 266.88367 * 19 18 17 22 22 O 1.42073 * 112.94413 * 147.16413 * 21 19 18 23 23 C 1.43398 * 112.42588 * 300.73548 * 22 21 19 24 24 C 1.52638 * 107.41652 * 70.02975 * 23 22 21 25 25 C 1.49916 * 112.62933 * 306.78393 * 24 23 22 26 26 C 1.50699 * 106.45716 * 148.41217 * 25 24 23 27 27 O 1.20821 * 120.00039 * 239.05847 * 26 25 24 28 28 O 1.34227 * 119.99916 * 59.06066 * 26 25 24 29 29 C 1.48698 * 110.99817 * 189.29578 * 17 2 1 30 30 H 1.09011 * 109.46487 * 173.17782 * 1 2 3 31 31 H 1.08998 * 109.47255 * 293.17204 * 1 2 3 32 32 H 1.08998 * 109.47546 * 53.17714 * 1 2 3 33 33 H 1.08998 * 109.47310 * 269.99696 * 7 6 4 34 34 H 1.09000 * 109.47511 * 30.00067 * 7 6 4 35 35 H 1.09005 * 109.47001 * 149.99819 * 7 6 4 36 36 H 1.08996 * 109.47302 * 330.00677 * 8 6 4 37 37 H 1.09000 * 109.47438 * 210.00132 * 8 6 4 38 38 H 0.97003 * 119.99394 * 359.97438 * 12 11 9 39 39 H 1.09009 * 110.59648 * 317.86850 * 18 17 2 40 40 H 1.08999 * 110.59452 * 80.79247 * 18 17 2 41 41 H 1.09006 * 108.78574 * 26.27605 * 21 19 18 42 42 H 1.08994 * 108.69894 * 268.00146 * 21 19 18 43 43 H 1.09006 * 109.86496 * 310.55960 * 23 22 21 44 44 H 1.08993 * 109.92928 * 189.54764 * 23 22 21 45 45 H 1.09003 * 108.84836 * 185.96613 * 24 23 22 46 46 H 1.09004 * 108.76548 * 67.53681 * 24 23 22 47 47 H 0.96699 * 117.00229 * 179.97438 * 28 26 25 48 48 H 1.09003 * 110.38275 * 274.47795 * 29 17 2 49 49 H 1.08999 * 110.38648 * 36.73148 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 0.8640 0.9408 -2.5890 8 6 2.1955 -0.9402 -3.6507 9 6 1.2033 -1.9977 -4.0611 10 1 0.2993 -2.1415 -3.4880 11 6 1.4501 -2.7823 -5.1677 12 7 2.5516 -2.6083 -5.8647 13 14 0.2205 -4.0935 -5.6759 14 1 -1.0880 -3.4568 -5.9721 15 1 0.0559 -5.0725 -4.5715 16 1 0.7164 -4.7940 -6.8878 17 7 2.0197 -0.6925 1.1994 18 6 1.4495 -0.0887 2.4337 19 6 2.4150 -0.5663 3.5548 20 1 2.4874 0.1945 4.3320 21 6 1.8443 -1.8446 4.1390 22 8 2.8480 -2.7512 4.5739 23 6 3.7290 -3.1424 3.5122 24 6 4.5789 -1.9267 3.1523 25 6 3.7516 -0.7127 2.8532 26 6 4.5681 0.4776 3.2863 27 8 4.1346 1.2363 4.1206 28 8 5.7770 0.6949 2.7449 29 6 3.4890 -0.5211 1.3511 30 1 -0.3633 -1.0205 -0.1221 31 1 -0.3634 0.4044 0.9447 32 1 -0.3634 0.6159 -0.8226 33 1 -0.1839 0.6424 -2.6225 34 1 1.0270 1.5996 -1.7360 35 1 1.1217 1.4664 -3.5085 36 1 3.1558 -1.4078 -3.4335 37 1 2.3165 -0.2214 -4.4612 38 1 3.1902 -1.9276 -5.6005 39 1 1.4507 0.9991 2.3644 40 1 0.4408 -0.4613 2.6121 41 1 1.2332 -2.3347 3.3810 42 1 1.2108 -1.5884 4.9881 43 1 3.1476 -3.4576 2.6456 44 1 4.3711 -3.9583 3.8439 45 1 5.1828 -2.1659 2.2770 46 1 5.2428 -1.7034 3.9875 47 1 6.2633 1.4715 3.0541 48 1 4.0210 -1.2767 0.7731 49 1 3.7893 0.4781 1.0358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589339837.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:50 Heat of formation + Delta-G solvation = -171.218846 kcal Electronic energy + Delta-G solvation = -32209.522476 eV Core-core repulsion = 27943.302517 eV Total energy + Delta-G solvation = -4266.219959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.82923 -41.06488 -40.14262 -38.37804 -37.34076 -36.74696 -35.53251 -34.77396 -33.40068 -31.25508 -29.60935 -28.90310 -27.65860 -26.62371 -25.46012 -25.06702 -24.04759 -23.25493 -22.33645 -20.29304 -19.94737 -19.13318 -19.00616 -18.48937 -18.24281 -17.49129 -17.20002 -16.83216 -16.49373 -16.37469 -16.20886 -15.77354 -15.65401 -15.34506 -15.14740 -14.70141 -14.52950 -14.29146 -14.13724 -13.93574 -13.62712 -13.59112 -13.57482 -13.29848 -13.21680 -13.09242 -12.97968 -12.72970 -12.61216 -12.53229 -12.43333 -12.23726 -12.20629 -11.95657 -11.81532 -11.50272 -11.25004 -11.17935 -10.60999 -10.60688 -10.53704 -9.57525 -9.45046 -8.68137 -6.43856 0.98308 1.49708 1.58787 1.74012 1.78419 1.81714 2.14854 2.54065 2.86181 2.87069 3.09596 3.11841 3.31827 3.51165 3.56706 3.79426 3.90791 3.97615 3.99632 4.09344 4.15357 4.28924 4.35208 4.40780 4.43215 4.53163 4.57938 4.63076 4.65496 4.69512 4.74715 4.75404 4.79200 4.84728 4.87446 4.92518 4.94110 5.04315 5.07307 5.20978 5.42686 5.53063 5.62941 5.75383 5.82840 6.13866 6.15696 6.45916 6.67511 6.80870 7.30004 7.42975 8.66684 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.003204 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.146416 B = 8736.514361 C = 9040.481510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 H 0.084 0.916 4 C 0.502 3.498 5 O -0.575 6.575 6 N -0.607 5.607 7 C 0.078 3.922 8 C 0.249 3.751 9 C -0.613 4.613 10 H 0.045 0.955 11 C -0.031 4.031 12 N -0.932 5.932 13 Si 1.117 2.883 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.280 1.280 17 N -0.500 5.500 18 C 0.038 3.962 19 C -0.121 4.121 20 H 0.116 0.884 21 C 0.071 3.929 22 O -0.388 6.388 23 C 0.061 3.939 24 C -0.132 4.132 25 C -0.028 4.028 26 C 0.485 3.515 27 O -0.532 6.532 28 O -0.507 6.507 29 C 0.054 3.946 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.069 0.931 36 H -0.008 1.008 37 H 0.018 0.982 38 H 0.255 0.745 39 H 0.062 0.938 40 H 0.113 0.887 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.053 0.947 44 H 0.118 0.882 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.428 0.572 48 H 0.081 0.919 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 9.797 20.876 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.045 4.045 3 H 0.101 0.899 4 C 0.289 3.711 5 O -0.454 6.454 6 N -0.339 5.339 7 C -0.064 4.064 8 C 0.127 3.873 9 C -0.652 4.652 10 H 0.063 0.937 11 C -0.229 4.229 12 N -0.569 5.569 13 Si 0.938 3.062 14 H -0.186 1.186 15 H -0.207 1.207 16 H -0.205 1.205 17 N -0.225 5.225 18 C -0.089 4.089 19 C -0.139 4.139 20 H 0.134 0.866 21 C -0.006 4.006 22 O -0.306 6.306 23 C -0.015 4.015 24 C -0.170 4.170 25 C -0.030 4.030 26 C 0.328 3.672 27 O -0.422 6.422 28 O -0.321 6.321 29 C -0.074 4.074 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.010 0.990 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.131 0.869 41 H 0.073 0.927 42 H 0.132 0.868 43 H 0.072 0.928 44 H 0.136 0.864 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.290 0.710 48 H 0.100 0.900 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.785 7.408 20.000 21.402 hybrid contribution 1.453 2.676 0.519 3.089 sum -0.332 10.084 20.519 22.865 Atomic orbital electron populations 1.22075 0.89935 1.03248 1.05198 1.21746 0.98877 0.95710 0.88153 0.89853 1.21074 0.80281 0.84638 0.85066 1.90618 1.40036 1.27947 1.86761 1.47947 1.50816 1.29344 1.05761 1.22090 0.94795 0.86006 1.03513 1.18862 0.93984 0.91836 0.82659 1.22513 1.07303 1.20906 1.14439 0.93694 1.27311 1.00431 1.01551 0.93592 1.70932 1.10337 1.34306 1.41365 0.82943 0.73576 0.73538 0.76156 1.18581 1.20662 1.20514 1.65279 1.04239 1.51857 1.01081 1.23710 0.99750 0.98194 0.87235 1.22157 0.91609 1.01428 0.98746 0.86638 1.22289 0.89827 0.87783 1.00651 1.87998 1.44553 1.62938 1.35135 1.22676 0.92311 0.95863 0.90659 1.21374 0.98231 0.93792 1.03574 1.20090 0.94566 0.92271 0.96102 1.23718 0.80129 0.85990 0.77399 1.90642 1.71137 1.47748 1.32644 1.84553 1.30262 1.52019 1.65234 1.23157 0.90438 1.00769 0.93014 0.93347 0.88382 0.89177 0.91733 0.88448 0.91267 0.99016 0.96421 0.93603 0.92019 0.86924 0.92652 0.86788 0.92846 0.86385 0.89304 0.90141 0.70961 0.90048 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.66 71.98 0.62 -2.64 16 2 C 0.07 1.86 1.50 44.17 0.07 1.93 16 3 H 0.08 1.94 7.14 -2.39 -0.02 1.93 16 4 C 0.50 20.50 6.87 87.66 0.60 21.11 16 5 O -0.57 -29.23 14.44 -3.04 -0.04 -29.27 16 6 N -0.61 -25.28 2.86 -851.13 -2.43 -27.71 16 7 C 0.08 2.24 8.83 127.77 1.13 3.37 16 8 C 0.25 13.24 4.52 85.64 0.39 13.62 16 9 C -0.61 -35.54 9.39 25.60 0.24 -35.30 16 10 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 11 C -0.03 -1.80 5.46 84.65 0.46 -1.33 16 12 N -0.93 -58.02 13.65 21.45 0.29 -57.73 16 13 Si 1.12 51.21 29.90 68.60 2.05 53.27 16 14 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 N -0.50 -13.53 4.89 -858.91 -4.20 -17.74 16 18 C 0.04 0.74 4.45 86.79 0.39 1.12 16 19 C -0.12 -2.46 2.86 -10.81 -0.03 -2.49 16 20 H 0.12 2.44 5.94 -2.39 -0.01 2.42 16 21 C 0.07 1.41 6.06 71.55 0.43 1.84 16 22 O -0.39 -8.92 10.81 -148.98 -1.61 -10.53 16 23 C 0.06 1.32 6.93 71.86 0.50 1.82 16 24 C -0.13 -2.83 4.97 29.48 0.15 -2.68 16 25 C -0.03 -0.65 0.85 -54.13 -0.05 -0.69 16 26 C 0.48 10.63 5.88 71.24 0.42 11.05 16 27 O -0.53 -13.39 15.52 21.98 0.34 -13.04 16 28 O -0.51 -8.90 13.04 -51.39 -0.67 -9.57 16 29 C 0.05 1.50 4.85 86.19 0.42 1.92 16 30 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.10 1.50 6.45 -2.39 -0.02 1.49 16 32 H 0.09 1.77 4.74 -2.39 -0.01 1.75 16 33 H 0.06 1.75 7.10 -2.39 -0.02 1.74 16 34 H 0.10 1.98 5.93 -2.39 -0.01 1.97 16 35 H 0.07 1.95 7.89 -2.38 -0.02 1.93 16 36 H -0.01 -0.50 7.29 -2.39 -0.02 -0.52 16 37 H 0.02 0.95 7.76 -2.39 -0.02 0.93 16 38 H 0.25 16.01 7.22 -92.71 -0.67 15.34 16 39 H 0.06 1.07 8.03 -2.38 -0.02 1.05 16 40 H 0.11 1.78 6.94 -2.39 -0.02 1.76 16 41 H 0.06 1.17 7.47 -2.38 -0.02 1.15 16 42 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 1.34 8.04 -2.38 -0.02 1.32 16 44 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.09 1.95 7.44 -2.39 -0.02 1.94 16 46 H 0.08 1.57 7.58 -2.39 -0.02 1.55 16 47 H 0.43 3.50 9.10 -74.06 -0.67 2.82 16 48 H 0.08 2.79 6.29 -2.39 -0.01 2.77 16 49 H 0.05 1.23 7.11 -2.39 -0.02 1.22 16 Total: -1.00 -81.24 376.21 -0.13 -81.37 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.41 Total: 18.32 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.73 Total: 12.63 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -6.34 Total: -103.17 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -1.98 Total: -62.42 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.05 Total: 53.27 kcal Total: -81.24 -0.13 -81.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589339837.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.851 kcal (2) G-P(sol) polarization free energy of solvation -81.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds