Wall clock time and date at job start Tue Mar 31 2020 23:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46947 * 2 1 4 4 C 1.50703 * 109.47268 * 119.99771 * 2 1 3 5 5 O 1.21273 * 120.00238 * 94.77772 * 4 2 1 6 6 N 1.34777 * 119.99898 * 274.78013 * 4 2 1 7 7 C 1.46928 * 120.63047 * 5.10877 * 6 4 2 8 8 C 1.53623 * 108.54535 * 126.36882 * 7 6 4 9 9 C 1.53040 * 109.24111 * 54.85717 * 8 7 6 10 10 C 1.50702 * 109.46160 * 178.49225 * 9 8 7 11 11 O 1.20814 * 120.00210 * 120.06597 * 10 9 8 12 12 O 1.34234 * 119.99733 * 300.06561 * 10 9 8 13 13 C 1.53044 * 109.53658 * 298.51230 * 9 8 7 14 14 C 1.46918 * 120.63374 * 185.39029 * 6 4 2 15 15 N 1.46899 * 109.47744 * 239.99776 * 2 1 3 16 16 C 1.47437 * 111.00449 * 180.12732 * 15 2 1 17 17 C 1.54322 * 107.23237 * 236.74376 * 16 15 2 18 18 C 1.55140 * 103.01969 * 337.71097 * 17 16 15 19 19 O 1.42897 * 111.02640 * 277.55095 * 18 17 16 20 20 C 1.50698 * 110.99101 * 153.74392 * 18 17 16 21 21 H 1.08001 * 120.00351 * 247.73603 * 20 18 17 22 22 C 1.37874 * 119.99879 * 67.73676 * 20 18 17 23 23 N 1.31515 * 120.00017 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 120.00119 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47275 * 90.00223 * 24 22 20 26 26 H 1.48506 * 109.47101 * 209.99929 * 24 22 20 27 27 H 1.48495 * 109.46998 * 329.99805 * 24 22 20 28 28 C 1.47849 * 110.99960 * 59.27833 * 15 2 1 29 29 H 1.08996 * 109.46873 * 60.36727 * 1 2 3 30 30 H 1.09000 * 109.47032 * 180.36261 * 1 2 3 31 31 H 1.08991 * 109.47411 * 300.36501 * 1 2 3 32 32 H 1.09010 * 109.58615 * 246.20246 * 7 6 4 33 33 H 1.09004 * 109.58933 * 6.62456 * 7 6 4 34 34 H 1.08995 * 109.63108 * 294.86578 * 8 7 6 35 35 H 1.09002 * 109.45773 * 174.74200 * 8 7 6 36 36 H 1.09000 * 109.45097 * 58.52081 * 9 8 7 37 37 H 0.96698 * 116.99847 * 180.02562 * 12 10 9 38 38 H 1.08997 * 109.49609 * 301.41200 * 13 9 8 39 39 H 1.08998 * 109.52044 * 181.33577 * 13 9 8 40 40 H 1.09007 * 109.58656 * 353.36815 * 14 6 4 41 41 H 1.08994 * 109.59519 * 113.65216 * 14 6 4 42 42 H 1.09001 * 109.89090 * 356.14399 * 16 15 2 43 43 H 1.08998 * 109.89291 * 117.33453 * 16 15 2 44 44 H 1.09001 * 110.70977 * 96.09440 * 17 16 15 45 45 H 1.09006 * 110.70308 * 219.33305 * 17 16 15 46 46 H 0.96703 * 114.00213 * 292.28463 * 19 18 17 47 47 H 0.97009 * 120.00285 * 179.97438 * 23 22 20 48 48 H 1.09002 * 110.37433 * 265.20025 * 28 15 2 49 49 H 1.09005 * 110.37067 * 27.54063 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3170 -1.8880 1.1771 6 7 2.1653 -0.0369 2.3903 7 6 1.7203 1.3591 2.5006 8 6 0.7630 1.4737 3.6966 9 6 1.4554 0.9342 4.9503 10 6 0.5340 1.0784 6.1341 11 8 0.1882 0.1003 6.7532 12 8 0.0976 2.2937 6.5007 13 6 1.7996 -0.5434 4.7491 14 6 2.7635 -0.6826 3.5667 15 7 2.0198 -0.6925 -1.1994 16 6 3.4936 -0.7148 -1.2318 17 6 3.9317 -0.0573 -2.5575 18 6 2.6768 -0.2131 -3.4563 19 8 2.6303 -1.5115 -4.0513 20 6 2.6310 0.8626 -4.5106 21 1 1.8631 1.6213 -4.4751 22 6 3.5693 0.8784 -5.5206 23 7 4.5047 -0.0451 -5.5637 24 14 3.5122 2.2115 -6.8279 25 1 4.3293 3.3710 -6.3887 26 1 4.0552 1.6780 -8.1030 27 1 2.1066 2.6451 -7.0315 28 6 1.5317 -0.0323 -2.4289 29 1 -0.3633 0.5081 -0.8932 30 1 -0.3633 -1.0276 0.0065 31 1 -0.3634 0.5194 0.8866 32 1 2.5834 2.0065 2.6565 33 1 1.2024 1.6508 1.5870 34 1 -0.1387 0.8936 3.5008 35 1 0.4967 2.5196 3.8496 36 1 2.3701 1.4987 5.1312 37 1 -0.4914 2.3361 7.2665 38 1 0.8880 -1.1045 4.5435 39 1 2.2713 -0.9335 5.6510 40 1 2.9340 -1.7386 3.3567 41 1 3.7110 -0.2001 3.8062 42 1 3.8918 -0.1502 -0.3887 43 1 3.8499 -1.7442 -1.1929 44 1 4.1686 0.9957 -2.4057 45 1 4.7819 -0.5867 -2.9877 46 1 3.3280 -1.6715 -4.7015 47 1 5.1647 -0.0343 -6.2746 48 1 0.6225 -0.5171 -2.7846 49 1 1.3509 1.0268 -2.2447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589350726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:49 Heat of formation + Delta-G solvation = -193.525819 kcal Electronic energy + Delta-G solvation = -31243.335574 eV Core-core repulsion = 26976.148312 eV Total energy + Delta-G solvation = -4267.187262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85899 -41.19155 -39.81875 -38.25055 -37.09738 -36.66091 -34.40234 -34.08169 -33.31545 -31.99912 -30.09104 -29.37884 -27.77843 -26.78786 -25.01983 -24.02800 -23.30390 -22.20416 -21.38195 -21.09218 -19.78620 -19.04697 -18.99439 -18.49847 -17.52064 -17.30906 -16.94741 -16.78795 -16.61494 -16.34980 -15.75268 -15.69198 -15.31796 -15.00890 -14.66914 -14.48737 -14.40049 -14.36509 -14.01299 -13.77405 -13.48307 -13.35592 -13.19871 -13.10555 -12.94898 -12.89963 -12.68634 -12.64596 -12.54818 -12.44267 -12.28160 -12.24934 -12.12547 -11.88224 -11.75052 -11.69767 -11.48213 -11.12639 -10.64977 -10.57897 -10.05522 -9.69827 -9.12383 -8.20069 -6.36266 1.19130 1.42881 1.45733 1.55181 1.58385 1.88459 2.12113 2.40180 3.02087 3.09479 3.41162 3.61015 3.63991 3.93025 3.96016 3.99046 4.04119 4.05969 4.12562 4.27438 4.34993 4.36697 4.38272 4.41844 4.60096 4.67586 4.70144 4.71384 4.76907 4.82202 4.85766 4.92299 4.99485 5.05606 5.06818 5.19341 5.24468 5.27868 5.47334 5.53476 5.54814 5.63278 5.80239 5.94147 6.11952 6.20553 6.40412 6.70459 6.99626 7.21031 7.36019 7.53011 8.85869 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023800 B = 0.002450 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.182498 B =11428.032804 C =11895.680113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.058 3.942 3 H 0.081 0.919 4 C 0.521 3.479 5 O -0.565 6.565 6 N -0.615 5.615 7 C 0.098 3.902 8 C -0.118 4.118 9 C -0.076 4.076 10 C 0.490 3.510 11 O -0.555 6.555 12 O -0.508 6.508 13 C -0.110 4.110 14 C 0.113 3.887 15 N -0.523 5.523 16 C 0.069 3.931 17 C -0.138 4.138 18 C 0.232 3.768 19 O -0.594 6.594 20 C -0.555 4.555 21 H 0.064 0.936 22 C 0.026 3.974 23 N -0.918 5.918 24 Si 0.965 3.035 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.269 1.269 28 C 0.074 3.926 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.140 0.860 37 H 0.427 0.573 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.375 0.625 47 H 0.269 0.731 48 H 0.065 0.935 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 10.352 22.837 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.054 4.054 3 H 0.098 0.902 4 C 0.309 3.691 5 O -0.442 6.442 6 N -0.349 5.349 7 C -0.024 4.024 8 C -0.156 4.156 9 C -0.095 4.095 10 C 0.334 3.666 11 O -0.446 6.446 12 O -0.321 6.321 13 C -0.148 4.148 14 C -0.009 4.009 15 N -0.248 5.248 16 C -0.059 4.059 17 C -0.177 4.177 18 C 0.192 3.808 19 O -0.403 6.403 20 C -0.594 4.594 21 H 0.082 0.918 22 C -0.174 4.174 23 N -0.558 5.558 24 Si 0.790 3.210 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.193 1.193 28 C -0.053 4.053 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.158 0.842 37 H 0.288 0.712 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.225 0.775 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.191 8.818 22.987 25.387 hybrid contribution 0.696 0.827 -0.714 1.295 sum -5.495 9.645 22.274 24.886 Atomic orbital electron populations 1.21799 0.90501 1.02875 1.04102 1.21969 0.98670 0.96182 0.88570 0.90180 1.20757 0.76782 0.86694 0.84896 1.90675 1.50839 1.17612 1.85075 1.48254 1.61690 1.14502 1.10474 1.22225 0.99490 0.80635 1.00034 1.21987 0.98030 1.04014 0.91592 1.21101 0.98893 0.98710 0.90818 1.23667 0.78400 0.80135 0.84447 1.90736 1.57139 1.41103 1.55581 1.84492 1.63262 1.32290 1.52075 1.21717 0.99986 0.94617 0.98512 1.21621 0.96320 0.99411 0.83588 1.63338 1.08435 1.51823 1.01238 1.22490 0.87688 0.99076 0.96639 1.23130 1.00498 0.98843 0.95219 1.19845 0.90114 0.81290 0.89560 1.86117 1.57422 1.35912 1.60805 1.21838 1.13855 1.12373 1.11290 0.91781 1.25769 0.94153 0.97965 0.99528 1.69699 1.16576 1.35311 1.34186 0.85460 0.78461 0.78987 0.78104 1.19837 1.21096 1.19317 1.22870 0.97970 0.96491 0.87957 0.90513 0.93168 0.88792 0.88177 0.88056 0.91657 0.86462 0.84204 0.71162 0.92764 0.89315 0.91007 0.88760 0.93396 0.93744 0.92527 0.93289 0.77505 0.92147 0.91699 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.83 71.98 0.64 -2.65 16 2 C 0.06 1.70 1.20 44.17 0.05 1.76 16 3 H 0.08 2.00 6.70 -2.39 -0.02 1.99 16 4 C 0.52 15.77 5.77 87.66 0.51 16.27 16 5 O -0.56 -22.77 15.50 -3.01 -0.05 -22.81 16 6 N -0.61 -12.58 2.97 -818.06 -2.43 -15.00 16 7 C 0.10 1.13 5.98 86.51 0.52 1.65 16 8 C -0.12 -1.05 5.31 30.82 0.16 -0.88 16 9 C -0.08 -0.78 2.59 -11.51 -0.03 -0.81 16 10 C 0.49 6.52 7.63 71.24 0.54 7.06 16 11 O -0.55 -11.93 16.74 22.00 0.37 -11.56 16 12 O -0.51 -3.89 13.30 -51.45 -0.68 -4.57 16 13 C -0.11 -1.69 4.65 30.67 0.14 -1.55 16 14 C 0.11 2.05 6.44 86.36 0.56 2.61 16 15 N -0.52 -20.91 4.74 -864.74 -4.10 -25.01 16 16 C 0.07 2.91 5.86 86.65 0.51 3.42 16 17 C -0.14 -6.49 5.63 31.78 0.18 -6.31 16 18 C 0.23 11.68 0.89 -10.15 -0.01 11.67 16 19 O -0.59 -33.09 13.18 -148.98 -1.96 -35.06 16 20 C -0.56 -29.13 8.25 25.60 0.21 -28.92 16 21 H 0.06 3.24 7.77 -2.91 -0.02 3.22 16 22 C 0.03 1.34 5.29 84.65 0.45 1.79 16 23 N -0.92 -49.57 10.77 21.45 0.23 -49.34 16 24 Si 0.96 41.24 29.54 68.60 2.03 43.27 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 26 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 C 0.07 3.13 4.56 86.77 0.40 3.53 16 29 H 0.08 1.81 7.03 -2.39 -0.02 1.80 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.56 7.09 -2.39 -0.02 1.55 16 32 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.10 1.12 4.80 -2.38 -0.01 1.11 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.12 0.52 8.08 -2.39 -0.02 0.50 16 36 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.43 0.25 9.10 -74.06 -0.67 -0.42 16 38 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 39 H 0.09 1.29 8.07 -2.39 -0.02 1.28 16 40 H 0.07 1.75 7.00 -2.38 -0.02 1.73 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 42 H 0.05 1.79 7.04 -2.39 -0.02 1.78 16 43 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.06 2.59 8.03 -2.39 -0.02 2.57 16 45 H 0.05 2.52 7.83 -2.38 -0.02 2.50 16 46 H 0.37 21.39 6.94 -74.06 -0.51 20.87 16 47 H 0.27 13.85 8.31 -92.70 -0.77 13.07 16 48 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 49 H 0.07 2.49 7.46 -2.38 -0.02 2.47 16 Total: -1.00 -75.16 383.31 -1.98 -77.14 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.20 Total: 34.33 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 4.82 Total: 8.63 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -6.29 Total: -89.36 kcal Atomic # 8 Polarization: -71.68 SS G_CDS: -2.33 Total: -74.01 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -75.16 -1.98 -77.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589350726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.386 kcal (2) G-P(sol) polarization free energy of solvation -75.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds