Wall clock time and date at job start Tue Mar 31 2020 23:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.90749 * 2 1 4 4 C 1.55303 * 110.84884 * 236.41264 * 2 1 3 5 5 C 1.54944 * 100.94192 * 207.67798 * 4 2 1 6 6 H 1.09000 * 110.39286 * 277.48106 * 5 4 2 7 7 C 1.50708 * 110.30763 * 155.36188 * 5 4 2 8 8 O 1.21277 * 119.99555 * 247.83319 * 7 5 4 9 9 N 1.34774 * 120.00247 * 67.83227 * 7 5 4 10 10 C 1.46491 * 120.00016 * 180.02562 * 9 7 5 11 11 C 1.53009 * 109.46979 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.49832 * 54.93610 * 11 10 9 13 13 C 1.53044 * 109.49488 * 174.99966 * 11 10 9 14 14 C 1.53038 * 109.53762 * 181.31674 * 13 11 10 15 15 C 1.53197 * 109.31172 * 298.63679 * 14 13 11 16 16 N 1.46922 * 108.77663 * 54.63452 * 15 14 13 17 17 C 1.36934 * 120.63285 * 126.41556 * 16 15 14 18 18 H 1.07999 * 120.00110 * 207.66935 * 17 16 15 19 19 C 1.38812 * 119.99844 * 27.67516 * 17 16 15 20 20 N 1.31612 * 120.00293 * 17.35338 * 19 17 16 21 21 Si 1.86799 * 119.99781 * 197.35761 * 19 17 16 22 22 H 1.48502 * 109.47337 * 89.99868 * 21 19 17 23 23 H 1.48499 * 109.47210 * 209.99639 * 21 19 17 24 24 H 1.48496 * 109.47356 * 329.99948 * 21 19 17 25 25 C 1.46933 * 118.73836 * 306.38758 * 16 15 14 26 26 O 1.43642 * 105.13690 * 36.44825 * 5 4 2 27 27 C 1.43239 * 109.97003 * 335.56566 * 26 5 4 28 28 H 1.09000 * 109.82690 * 121.31632 * 27 26 5 29 29 C 1.50696 * 109.83137 * 242.20060 * 27 26 5 30 30 O 1.20829 * 120.00120 * 3.55312 * 29 27 26 31 31 O 1.34233 * 119.99953 * 183.54633 * 29 27 26 32 32 H 1.09007 * 109.47154 * 297.87231 * 1 2 3 33 33 H 1.09006 * 109.47117 * 57.86961 * 1 2 3 34 34 H 1.08995 * 109.47624 * 177.87235 * 1 2 3 35 35 H 1.09005 * 111.12323 * 89.75730 * 4 2 1 36 36 H 1.08999 * 111.12375 * 325.60075 * 4 2 1 37 37 H 0.97001 * 119.99507 * 359.97438 * 9 7 5 38 38 H 1.09004 * 109.47400 * 299.99790 * 10 9 7 39 39 H 1.09003 * 109.47551 * 60.00121 * 10 9 7 40 40 H 1.08995 * 109.46070 * 301.33345 * 13 11 10 41 41 H 1.08997 * 109.46317 * 61.30882 * 13 11 10 42 42 H 1.09007 * 109.49665 * 58.58138 * 14 13 11 43 43 H 1.08998 * 109.49991 * 178.68591 * 14 13 11 44 44 H 1.08999 * 109.58663 * 174.42635 * 15 14 13 45 45 H 1.09001 * 109.58235 * 294.70226 * 15 14 13 46 46 H 0.97005 * 120.00553 * 180.02562 * 20 19 17 47 47 H 1.08993 * 109.58875 * 293.83036 * 25 16 15 48 48 H 1.08992 * 109.58444 * 173.39696 * 25 16 15 49 49 H 0.96697 * 117.00337 * 180.02562 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0827 -0.8029 -1.2090 5 6 3.4464 -1.2784 -0.6477 6 1 4.1948 -0.4928 -0.7520 7 6 3.8980 -2.5277 -1.3593 8 8 3.9459 -3.5820 -0.7619 9 7 4.2487 -2.4733 -2.6595 10 6 4.6872 -3.6878 -3.3513 11 6 5.0234 -3.3529 -4.8060 12 1 5.7570 -2.5474 -4.8336 13 6 5.5992 -4.5921 -5.4954 14 6 5.9663 -4.2493 -6.9410 15 6 4.7046 -3.8185 -7.6956 16 7 4.0648 -2.7201 -6.9588 17 6 3.7661 -1.5401 -7.5861 18 1 3.7270 -0.6219 -7.0189 19 6 3.5133 -1.5242 -8.9509 20 7 3.2226 -2.6434 -9.5795 21 14 3.5859 0.0858 -9.8955 22 1 4.9657 0.3019 -10.4002 23 1 2.6428 0.0304 -11.0412 24 1 3.2070 1.2049 -8.9960 25 6 3.7510 -2.9121 -5.5363 26 8 3.2044 -1.5554 0.7409 27 6 2.0794 -0.7980 1.2020 28 1 1.3114 -1.4713 1.5826 29 6 2.5128 0.1502 2.2901 30 8 3.6792 0.2258 2.5964 31 8 1.6031 0.9109 2.9190 32 1 -0.3634 0.4805 0.9085 33 1 -0.3634 0.5466 -0.8703 34 1 -0.3634 -1.0269 -0.0381 35 1 2.2185 -0.1598 -2.0786 36 1 1.4385 -1.6497 -1.4458 37 1 4.2101 -1.6300 -3.1373 38 1 5.5720 -4.0885 -2.8565 39 1 3.8889 -4.4295 -3.3248 40 1 6.4910 -4.9224 -4.9629 41 1 4.8561 -5.3895 -5.4889 42 1 6.6908 -3.4349 -6.9490 43 1 6.3978 -5.1258 -7.4244 44 1 4.9748 -3.4792 -8.6955 45 1 4.0172 -4.6613 -7.7691 46 1 3.0464 -2.6324 -10.5333 47 1 2.9848 -3.6802 -5.4315 48 1 3.3921 -1.9747 -5.1116 49 1 1.9288 1.5041 3.6098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599875248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:38 Heat of formation + Delta-G solvation = -161.589690 kcal Electronic energy + Delta-G solvation = -30399.020125 eV Core-core repulsion = 26133.217717 eV Total energy + Delta-G solvation = -4265.802408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28647 -40.01725 -38.77940 -37.69900 -36.45837 -34.90173 -34.08858 -33.08870 -31.44274 -30.48961 -30.02914 -27.70110 -26.00232 -25.33207 -24.24102 -22.21826 -22.00835 -21.42382 -20.92823 -20.26488 -19.08607 -18.73817 -17.68649 -17.41228 -16.78718 -16.55038 -16.16124 -15.63295 -15.46040 -14.97116 -14.89134 -14.52728 -14.21477 -13.94658 -13.68392 -13.53435 -13.45979 -13.42060 -12.84128 -12.82475 -12.48504 -12.37730 -12.22220 -12.15633 -11.96219 -11.90037 -11.62787 -11.34569 -11.33811 -11.06183 -11.03268 -10.77067 -10.53608 -10.28151 -10.24328 -10.20758 -9.97937 -9.75667 -9.51469 -9.46664 -8.98993 -8.51433 -6.73443 -5.84110 -3.27128 1.77755 2.23677 2.54550 2.94501 3.32930 3.39855 3.41169 3.56089 3.81680 4.24977 4.32392 4.42958 4.51562 4.66711 4.79526 4.83253 4.92279 5.06277 5.13710 5.25222 5.26175 5.39913 5.41459 5.42296 5.46071 5.57806 5.62529 5.78383 5.79621 5.91203 5.95773 6.07646 6.19258 6.26423 6.29092 6.33839 6.45246 6.54861 6.66433 6.72900 6.82234 6.91426 7.35863 7.49739 7.50956 7.63228 7.73207 8.19680 8.38932 9.15271 9.78979 10.35689 11.24020 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013782 B = 0.002533 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.212392 B =11050.324037 C =12493.974596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.094 0.906 4 C -0.142 4.142 5 C 0.059 3.941 6 H 0.102 0.898 7 C 0.514 3.486 8 O -0.524 6.524 9 N -0.719 5.719 10 C 0.128 3.872 11 C -0.118 4.118 12 H 0.073 0.927 13 C -0.100 4.100 14 C -0.142 4.142 15 C 0.168 3.832 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.155 3.845 26 O -0.319 6.319 27 C 0.093 3.907 28 H 0.126 0.874 29 C 0.465 3.535 30 O -0.496 6.496 31 O -0.514 6.514 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.403 0.597 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.018 0.982 46 H 0.254 0.746 47 H 0.019 0.981 48 H 0.050 0.950 49 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 5.522 19.070 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 H 0.113 0.887 4 C -0.180 4.180 5 C -0.001 4.001 6 H 0.119 0.881 7 C 0.298 3.702 8 O -0.399 6.399 9 N -0.372 5.372 10 C 0.005 3.995 11 C -0.139 4.139 12 H 0.092 0.908 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.028 3.972 26 O -0.236 6.236 27 C 0.033 3.967 28 H 0.143 0.857 29 C 0.305 3.695 30 O -0.382 6.382 31 O -0.326 6.326 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.238 0.762 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.068 0.932 49 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -3.311 4.339 19.221 19.981 hybrid contribution 0.279 1.745 -0.368 1.805 sum -3.032 6.084 18.853 20.041 Atomic orbital electron populations 1.21770 0.91906 1.03157 1.03306 1.22650 0.98494 0.99770 0.91817 0.88733 1.23430 0.94593 1.01327 0.98660 1.22973 0.98828 0.95983 0.82355 0.88070 1.20143 0.77959 0.89844 0.82220 1.90726 1.52301 1.30949 1.65950 1.45955 1.67713 1.13244 1.10274 1.21495 0.99656 0.86199 0.92168 1.21966 1.00918 0.99168 0.91802 0.90811 1.21341 0.99390 0.96453 0.96620 1.22172 1.00908 0.99759 0.95254 1.20801 0.89345 0.89556 0.96025 1.44039 1.68375 1.14257 1.04699 1.19154 1.42228 0.85475 0.91560 0.91724 1.25036 0.99566 0.96774 0.98202 1.70036 1.49586 1.25681 1.09188 0.86303 0.77504 0.83321 0.79683 1.21442 1.21775 1.20462 1.20889 0.92201 0.97877 0.86239 1.88665 1.48264 1.63328 1.23362 1.22377 0.89660 0.92271 0.92381 0.85687 1.23875 0.83991 0.79468 0.82133 1.90760 1.19665 1.64682 1.63103 1.84500 1.43373 1.53032 1.51733 0.91198 0.91121 0.91619 0.87764 0.88613 0.76175 0.91829 0.91434 0.93395 0.92443 0.92751 0.93159 0.89548 0.96430 0.93581 0.96337 0.93195 0.72915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.14 37.16 0.34 -0.44 16 2 C -0.11 -0.75 3.11 -88.67 -0.28 -1.02 16 3 H 0.09 0.59 7.84 -51.93 -0.41 0.18 16 4 C -0.14 -1.12 6.02 -24.48 -0.15 -1.27 16 5 C 0.06 0.65 3.86 -26.85 -0.10 0.55 16 6 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 7 C 0.51 7.10 7.17 -10.98 -0.08 7.02 16 8 O -0.52 -9.49 16.55 -13.77 -0.23 -9.71 16 9 N -0.72 -8.95 5.33 -60.29 -0.32 -9.27 16 10 C 0.13 1.79 5.07 -4.04 -0.02 1.77 16 11 C -0.12 -1.84 2.37 -90.49 -0.21 -2.05 16 12 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 14 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 15 C 0.17 3.87 5.31 -3.71 -0.02 3.85 16 16 N -0.59 -13.96 2.99 -172.32 -0.52 -14.48 16 17 C -0.25 -6.61 9.58 -15.06 -0.14 -6.76 16 18 H 0.07 1.62 7.89 -52.49 -0.41 1.21 16 19 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 20 N -0.90 -25.42 11.19 55.49 0.62 -24.80 16 21 Si 0.90 20.89 29.59 -169.99 -5.03 15.86 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 C 0.15 2.93 5.60 -3.71 -0.02 2.91 16 26 O -0.32 -4.19 9.82 -64.44 -0.63 -4.82 16 27 C 0.09 0.86 3.66 -27.16 -0.10 0.76 16 28 H 0.13 0.96 7.82 -51.93 -0.41 0.56 16 29 C 0.46 4.53 7.51 36.00 0.27 4.80 16 30 O -0.50 -6.82 17.28 -25.41 -0.44 -7.26 16 31 O -0.51 -3.17 13.42 -39.26 -0.53 -3.70 16 32 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.80 7.93 -51.93 -0.41 0.39 16 37 H 0.40 4.27 7.71 -40.82 -0.31 3.96 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 2.24 6.04 -51.93 -0.31 1.93 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.05 0.88 7.14 -51.93 -0.37 0.51 16 49 H 0.41 0.93 9.10 45.56 0.41 1.34 16 LS Contribution 395.82 15.07 5.96 5.96 Total: -1.00 -35.18 395.82 -9.28 -44.46 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.28 Total: 2.12 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -0.90 Total: 5.64 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.22 Total: -48.55 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.83 Total: -25.49 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.18 -9.28 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599875248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.129 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds