Wall clock time and date at job start Tue Mar 31 2020 23:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.90749 * 2 1 4 4 C 1.55303 * 110.84884 * 236.41264 * 2 1 3 5 5 C 1.54944 * 100.94192 * 207.67798 * 4 2 1 6 6 H 1.09000 * 110.39286 * 277.48106 * 5 4 2 7 7 C 1.50708 * 110.30763 * 155.36188 * 5 4 2 8 8 O 1.21277 * 119.99555 * 247.83319 * 7 5 4 9 9 N 1.34774 * 120.00247 * 67.83227 * 7 5 4 10 10 C 1.46491 * 120.00016 * 180.02562 * 9 7 5 11 11 C 1.53009 * 109.46979 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.49832 * 54.93610 * 11 10 9 13 13 C 1.53044 * 109.49488 * 174.99966 * 11 10 9 14 14 C 1.53038 * 109.53762 * 181.31674 * 13 11 10 15 15 C 1.53197 * 109.31172 * 298.63679 * 14 13 11 16 16 N 1.46922 * 108.77663 * 54.63452 * 15 14 13 17 17 C 1.36934 * 120.63285 * 126.41556 * 16 15 14 18 18 H 1.07999 * 120.00110 * 207.66935 * 17 16 15 19 19 C 1.38812 * 119.99844 * 27.67516 * 17 16 15 20 20 N 1.31612 * 120.00293 * 17.35338 * 19 17 16 21 21 Si 1.86799 * 119.99781 * 197.35761 * 19 17 16 22 22 H 1.48502 * 109.47337 * 89.99868 * 21 19 17 23 23 H 1.48499 * 109.47210 * 209.99639 * 21 19 17 24 24 H 1.48496 * 109.47356 * 329.99948 * 21 19 17 25 25 C 1.46933 * 118.73836 * 306.38758 * 16 15 14 26 26 O 1.43642 * 105.13690 * 36.44825 * 5 4 2 27 27 C 1.43239 * 109.97003 * 335.56566 * 26 5 4 28 28 H 1.09000 * 109.82690 * 121.31632 * 27 26 5 29 29 C 1.50696 * 109.83137 * 242.20060 * 27 26 5 30 30 O 1.20829 * 120.00120 * 3.55312 * 29 27 26 31 31 O 1.34233 * 119.99953 * 183.54633 * 29 27 26 32 32 H 1.09007 * 109.47154 * 297.87231 * 1 2 3 33 33 H 1.09006 * 109.47117 * 57.86961 * 1 2 3 34 34 H 1.08995 * 109.47624 * 177.87235 * 1 2 3 35 35 H 1.09005 * 111.12323 * 89.75730 * 4 2 1 36 36 H 1.08999 * 111.12375 * 325.60075 * 4 2 1 37 37 H 0.97001 * 119.99507 * 359.97438 * 9 7 5 38 38 H 1.09004 * 109.47400 * 299.99790 * 10 9 7 39 39 H 1.09003 * 109.47551 * 60.00121 * 10 9 7 40 40 H 1.08995 * 109.46070 * 301.33345 * 13 11 10 41 41 H 1.08997 * 109.46317 * 61.30882 * 13 11 10 42 42 H 1.09007 * 109.49665 * 58.58138 * 14 13 11 43 43 H 1.08998 * 109.49991 * 178.68591 * 14 13 11 44 44 H 1.08999 * 109.58663 * 174.42635 * 15 14 13 45 45 H 1.09001 * 109.58235 * 294.70226 * 15 14 13 46 46 H 0.97005 * 120.00553 * 180.02562 * 20 19 17 47 47 H 1.08993 * 109.58875 * 293.83036 * 25 16 15 48 48 H 1.08992 * 109.58444 * 173.39696 * 25 16 15 49 49 H 0.96697 * 117.00337 * 180.02562 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0827 -0.8029 -1.2090 5 6 3.4464 -1.2784 -0.6477 6 1 4.1948 -0.4928 -0.7520 7 6 3.8980 -2.5277 -1.3593 8 8 3.9459 -3.5820 -0.7619 9 7 4.2487 -2.4733 -2.6595 10 6 4.6872 -3.6878 -3.3513 11 6 5.0234 -3.3529 -4.8060 12 1 5.7570 -2.5474 -4.8336 13 6 5.5992 -4.5921 -5.4954 14 6 5.9663 -4.2493 -6.9410 15 6 4.7046 -3.8185 -7.6956 16 7 4.0648 -2.7201 -6.9588 17 6 3.7661 -1.5401 -7.5861 18 1 3.7270 -0.6219 -7.0189 19 6 3.5133 -1.5242 -8.9509 20 7 3.2226 -2.6434 -9.5795 21 14 3.5859 0.0858 -9.8955 22 1 4.9657 0.3019 -10.4002 23 1 2.6428 0.0304 -11.0412 24 1 3.2070 1.2049 -8.9960 25 6 3.7510 -2.9121 -5.5363 26 8 3.2044 -1.5554 0.7409 27 6 2.0794 -0.7980 1.2020 28 1 1.3114 -1.4713 1.5826 29 6 2.5128 0.1502 2.2901 30 8 3.6792 0.2258 2.5964 31 8 1.6031 0.9109 2.9190 32 1 -0.3634 0.4805 0.9085 33 1 -0.3634 0.5466 -0.8703 34 1 -0.3634 -1.0269 -0.0381 35 1 2.2185 -0.1598 -2.0786 36 1 1.4385 -1.6497 -1.4458 37 1 4.2101 -1.6300 -3.1373 38 1 5.5720 -4.0885 -2.8565 39 1 3.8889 -4.4295 -3.3248 40 1 6.4910 -4.9224 -4.9629 41 1 4.8561 -5.3895 -5.4889 42 1 6.6908 -3.4349 -6.9490 43 1 6.3978 -5.1258 -7.4244 44 1 4.9748 -3.4792 -8.6955 45 1 4.0172 -4.6613 -7.7691 46 1 3.0464 -2.6324 -10.5333 47 1 2.9848 -3.6802 -5.4315 48 1 3.3921 -1.9747 -5.1116 49 1 1.9288 1.5041 3.6098 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599875248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:37 Heat of formation + Delta-G solvation = -185.686745 kcal Electronic energy + Delta-G solvation = -30400.065052 eV Core-core repulsion = 26133.217717 eV Total energy + Delta-G solvation = -4266.847335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.06144 -40.95553 -39.80536 -39.08189 -37.15391 -36.27711 -34.85321 -34.60348 -32.55477 -32.26166 -31.22931 -28.31396 -27.28513 -27.02684 -25.22255 -23.79612 -22.81028 -22.48600 -21.97829 -21.31875 -20.51295 -19.44603 -18.71326 -18.42742 -18.16811 -17.51526 -17.00867 -16.77205 -16.67796 -16.40449 -15.91134 -15.63731 -15.59035 -15.09449 -14.98511 -14.63890 -14.49072 -14.35993 -14.04919 -13.95861 -13.72941 -13.58202 -13.38379 -13.13983 -12.99542 -12.85014 -12.64915 -12.54722 -12.49152 -12.23789 -12.18946 -11.93569 -11.91419 -11.79958 -11.78332 -11.55735 -11.31755 -11.09836 -11.03991 -10.62197 -10.50413 -10.11316 -8.65610 -7.83630 -5.28999 1.05024 1.46188 1.49535 1.51818 1.56309 1.59522 2.09602 2.53795 2.79135 3.15719 3.31385 3.54427 3.62216 3.66983 3.85033 3.95889 4.01180 4.02850 4.07742 4.10305 4.24021 4.41176 4.42241 4.52613 4.59203 4.63190 4.73976 4.79178 4.88430 4.90270 4.93006 5.02193 5.02844 5.12715 5.13067 5.23884 5.34604 5.38046 5.39672 5.45113 5.49527 5.59618 5.61406 5.69929 5.80843 6.41679 6.49338 6.92243 7.15985 7.17828 7.89677 8.41803 9.22716 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013782 B = 0.002533 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.212392 B =11050.324037 C =12493.974596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.105 0.895 4 C -0.137 4.137 5 C 0.059 3.941 6 H 0.118 0.882 7 C 0.514 3.486 8 O -0.573 6.573 9 N -0.708 5.708 10 C 0.138 3.862 11 C -0.100 4.100 12 H 0.078 0.922 13 C -0.098 4.098 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.609 5.609 17 C -0.257 4.257 18 H 0.075 0.925 19 C -0.054 4.054 20 N -0.938 5.938 21 Si 0.965 3.035 22 H -0.289 1.289 23 H -0.300 1.300 24 H -0.263 1.263 25 C 0.153 3.847 26 O -0.356 6.356 27 C 0.084 3.916 28 H 0.138 0.862 29 C 0.474 3.526 30 O -0.544 6.544 31 O -0.499 6.499 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.415 0.585 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.051 0.949 45 H -0.008 1.008 46 H 0.248 0.752 47 H 0.007 0.993 48 H 0.063 0.937 49 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.750 7.342 20.336 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.124 0.876 4 C -0.174 4.174 5 C -0.001 4.001 6 H 0.135 0.865 7 C 0.300 3.700 8 O -0.452 6.452 9 N -0.362 5.362 10 C 0.014 3.986 11 C -0.120 4.120 12 H 0.097 0.903 13 C -0.136 4.136 14 C -0.169 4.169 15 C 0.046 3.954 16 N -0.332 5.332 17 C -0.387 4.387 18 H 0.093 0.907 19 C -0.249 4.249 20 N -0.584 5.584 21 Si 0.793 3.207 22 H -0.216 1.216 23 H -0.227 1.227 24 H -0.187 1.187 25 C 0.028 3.972 26 O -0.274 6.274 27 C 0.025 3.975 28 H 0.155 0.845 29 C 0.317 3.683 30 O -0.433 6.433 31 O -0.313 6.313 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.145 0.855 36 H 0.108 0.892 37 H 0.252 0.748 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.010 0.990 46 H 0.057 0.943 47 H 0.025 0.975 48 H 0.082 0.918 49 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -3.480 6.209 20.519 21.718 hybrid contribution 0.261 1.167 -0.692 1.381 sum -3.219 7.376 19.827 21.398 Atomic orbital electron populations 1.21771 0.90568 1.03382 1.04110 1.22651 0.99390 0.99634 0.89914 0.87644 1.23472 0.92633 1.01579 0.99736 1.23076 1.00845 0.94506 0.81719 0.86457 1.20694 0.76885 0.90225 0.82190 1.90701 1.54487 1.32960 1.67006 1.45850 1.66964 1.13306 1.10042 1.21288 0.99631 0.86618 0.91067 1.21724 0.98998 0.99156 0.92158 0.90335 1.21343 1.00668 0.96467 0.95168 1.21999 0.98211 1.00311 0.96388 1.20624 0.90883 0.88558 0.95318 1.44313 1.68765 1.13747 1.06380 1.19569 1.40519 0.86717 0.91904 0.90738 1.25790 1.00225 0.99568 0.99293 1.70199 1.51592 1.27733 1.08874 0.85302 0.76872 0.80319 0.78176 1.21610 1.22741 1.18725 1.21031 0.93664 0.98359 0.84174 1.88620 1.49734 1.64599 1.24419 1.22651 0.88942 0.92660 0.93285 0.84498 1.23940 0.83441 0.79143 0.81795 1.90746 1.21599 1.66327 1.64668 1.84456 1.42179 1.52714 1.51964 0.90433 0.90251 0.91739 0.85535 0.89205 0.74820 0.91299 0.92290 0.90417 0.92664 0.92829 0.91473 0.93089 0.98972 0.94316 0.97527 0.91837 0.70716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.14 71.98 0.66 -0.47 16 2 C -0.10 -1.09 3.11 -9.53 -0.03 -1.12 16 3 H 0.11 0.98 7.84 -2.39 -0.02 0.97 16 4 C -0.14 -1.83 6.02 32.05 0.19 -1.64 16 5 C 0.06 1.20 3.86 30.52 0.12 1.32 16 6 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 7 C 0.51 13.68 7.17 87.66 0.63 14.31 16 8 O -0.57 -20.72 16.55 15.46 0.26 -20.47 16 9 N -0.71 -16.33 5.33 -463.05 -2.47 -18.80 16 10 C 0.14 3.60 5.07 86.38 0.44 4.04 16 11 C -0.10 -2.91 2.37 -10.71 -0.03 -2.93 16 12 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 13 C -0.10 -2.92 5.17 30.62 0.16 -2.76 16 14 C -0.13 -4.61 6.08 30.67 0.19 -4.42 16 15 C 0.17 8.04 5.31 86.37 0.46 8.50 16 16 N -0.61 -28.64 2.99 -699.10 -2.09 -30.73 16 17 C -0.26 -13.23 9.58 84.03 0.81 -12.42 16 18 H 0.07 3.62 7.89 -2.91 -0.02 3.59 16 19 C -0.05 -2.88 4.91 84.86 0.42 -2.47 16 20 N -0.94 -54.39 11.19 21.65 0.24 -54.15 16 21 Si 0.96 43.04 29.59 68.60 2.03 45.07 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 25 C 0.15 5.63 5.60 86.36 0.48 6.11 16 26 O -0.36 -9.16 9.82 -121.05 -1.19 -10.35 16 27 C 0.08 1.43 3.66 30.32 0.11 1.54 16 28 H 0.14 1.93 7.82 -2.39 -0.02 1.91 16 29 C 0.47 8.62 7.51 71.23 0.54 9.15 16 30 O -0.54 -14.73 17.28 28.32 0.49 -14.24 16 31 O -0.50 -5.01 13.42 -51.44 -0.69 -5.70 16 32 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.06 0.55 8.12 -2.39 -0.02 0.53 16 35 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.09 1.34 7.93 -2.39 -0.02 1.32 16 37 H 0.41 7.70 7.71 -92.71 -0.71 6.99 16 38 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.05 2.73 6.04 -2.39 -0.01 2.72 16 45 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 46 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 47 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 48 H 0.06 2.12 7.14 -2.39 -0.02 2.10 16 49 H 0.43 0.94 9.10 -74.06 -0.67 0.26 16 Total: -1.00 -78.47 395.82 1.29 -77.18 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -0.42 Total: 15.46 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.14 Total: 16.74 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -4.32 Total: -103.69 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -1.13 Total: -50.76 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -78.47 1.29 -77.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599875248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.507 kcal (2) G-P(sol) polarization free energy of solvation -78.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds