Wall clock time and date at job start Tue Mar 31 2020 23:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.75666 * 2 1 4 4 C 1.55304 * 110.84252 * 236.30198 * 2 1 3 5 5 C 1.54952 * 100.93948 * 207.67905 * 4 2 1 6 6 H 1.08997 * 110.39306 * 277.48295 * 5 4 2 7 7 C 1.50699 * 110.30559 * 155.36266 * 5 4 2 8 8 O 1.21280 * 119.99951 * 247.82786 * 7 5 4 9 9 N 1.34782 * 120.00209 * 67.83766 * 7 5 4 10 10 C 1.46502 * 119.99915 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.46759 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.50153 * 304.99964 * 11 10 9 13 13 C 1.53045 * 109.49502 * 184.93698 * 11 10 9 14 14 C 1.53039 * 109.53713 * 178.65071 * 13 11 10 15 15 C 1.53198 * 109.31231 * 61.36800 * 14 13 11 16 16 N 1.46926 * 108.77441 * 305.36298 * 15 14 13 17 17 C 1.36934 * 120.63429 * 233.58847 * 16 15 14 18 18 H 1.07999 * 120.00358 * 152.62488 * 17 16 15 19 19 C 1.38813 * 119.99755 * 332.63062 * 17 16 15 20 20 N 1.31622 * 120.00117 * 159.34486 * 19 17 16 21 21 Si 1.86801 * 119.99854 * 339.34143 * 19 17 16 22 22 H 1.48501 * 109.47060 * 92.94793 * 21 19 17 23 23 H 1.48498 * 109.47013 * 212.94170 * 21 19 17 24 24 H 1.48492 * 109.47134 * 332.94573 * 21 19 17 25 25 C 1.46933 * 118.73656 * 53.60578 * 16 15 14 26 26 O 1.43639 * 105.13811 * 36.44836 * 5 4 2 27 27 C 1.43243 * 109.96977 * 335.57226 * 26 5 4 28 28 H 1.09004 * 109.83215 * 121.22567 * 27 26 5 29 29 C 1.50703 * 109.82947 * 242.10668 * 27 26 5 30 30 O 1.20829 * 119.99814 * 3.54504 * 29 27 26 31 31 O 1.34225 * 119.99952 * 183.54377 * 29 27 26 32 32 H 1.09007 * 109.46804 * 297.98089 * 1 2 3 33 33 H 1.08998 * 109.47019 * 57.97888 * 1 2 3 34 34 H 1.08999 * 109.47318 * 177.98364 * 1 2 3 35 35 H 1.09002 * 111.12841 * 89.76436 * 4 2 1 36 36 H 1.09001 * 111.12982 * 325.59698 * 4 2 1 37 37 H 0.96996 * 119.99762 * 359.97438 * 9 7 5 38 38 H 1.09005 * 109.46791 * 59.99922 * 10 9 7 39 39 H 1.08993 * 109.47393 * 299.99911 * 10 9 7 40 40 H 1.08996 * 109.45811 * 298.67234 * 13 11 10 41 41 H 1.09001 * 109.45857 * 58.64603 * 13 11 10 42 42 H 1.08997 * 109.49914 * 181.31607 * 14 13 11 43 43 H 1.09001 * 109.50053 * 301.38360 * 14 13 11 44 44 H 1.08994 * 109.59081 * 65.14825 * 15 14 13 45 45 H 1.08998 * 109.58594 * 185.43793 * 15 14 13 46 46 H 0.97001 * 119.99856 * 180.02562 * 20 19 17 47 47 H 1.09006 * 109.58492 * 186.60729 * 25 16 15 48 48 H 1.08997 * 109.58410 * 66.18776 * 25 16 15 49 49 H 0.96703 * 117.00138 * 180.02562 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9163 1.0192 0.0000 4 6 2.0826 -0.8053 -1.2075 5 6 3.4463 -1.2797 -0.6453 6 1 4.1948 -0.4945 -0.7512 7 6 3.8978 -2.5304 -1.3545 8 8 3.9458 -3.5837 -0.7551 9 7 4.2486 -2.4785 -2.6548 10 6 4.6880 -3.6942 -3.3441 11 6 5.0240 -3.3622 -4.7994 12 1 4.1664 -2.8817 -5.2703 13 6 5.3645 -4.6507 -5.5517 14 6 5.6680 -4.3236 -7.0156 15 6 6.8795 -3.3886 -7.0852 16 7 6.6173 -2.2116 -6.2458 17 6 6.7337 -0.9479 -6.7600 18 1 6.1517 -0.1393 -6.3430 19 6 7.5999 -0.7060 -7.8175 20 7 7.4350 0.3593 -8.5728 21 14 8.9995 -1.8923 -8.1685 22 1 8.5571 -2.8980 -9.1676 23 1 10.1627 -1.1408 -8.7045 24 1 9.3911 -2.5812 -6.9127 25 6 6.2282 -2.4164 -4.8438 26 8 3.2044 -1.5540 0.7438 27 6 2.0794 -0.7958 1.2034 28 1 1.3107 -1.4685 1.5840 29 6 2.5124 0.1529 2.2914 30 8 3.6786 0.2280 2.5986 31 8 1.6026 0.9145 2.9190 32 1 -0.3633 0.4822 0.9076 33 1 -0.3633 0.5449 -0.8713 34 1 -0.3634 -1.0270 -0.0362 35 1 2.2185 -0.1639 -2.0784 36 1 1.4384 -1.6525 -1.4427 37 1 4.2100 -1.6361 -3.1342 38 1 3.8901 -4.4364 -3.3160 39 1 5.5729 -4.0932 -2.8485 40 1 6.2373 -5.1177 -5.0955 41 1 4.5179 -5.3354 -5.5008 42 1 5.8875 -5.2443 -7.5562 43 1 4.8041 -3.8346 -7.4658 44 1 7.7643 -3.9090 -6.7186 45 1 7.0408 -3.0756 -8.1168 46 1 8.0400 0.5281 -9.3120 47 1 5.9582 -1.4598 -4.3961 48 1 7.0599 -2.8574 -4.2944 49 1 1.9281 1.5080 3.6096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599875251.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:40 Heat of formation + Delta-G solvation = -155.513117 kcal Electronic energy + Delta-G solvation = -30365.831536 eV Core-core repulsion = 26100.292628 eV Total energy + Delta-G solvation = -4265.538908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.30443 -40.04704 -38.86481 -37.94245 -36.45876 -35.04175 -34.13298 -33.11892 -31.60160 -30.89414 -30.33851 -27.74471 -26.31180 -25.34683 -24.40319 -22.18784 -22.00112 -21.62558 -21.20416 -20.31109 -19.36895 -18.74674 -17.69766 -17.45195 -16.83933 -16.58282 -16.18495 -15.68991 -15.52250 -15.37944 -15.10739 -14.59469 -14.25488 -13.94537 -13.82567 -13.61825 -13.55887 -13.45645 -13.24320 -12.88235 -12.67588 -12.56116 -12.37354 -12.15938 -11.97999 -11.92544 -11.71081 -11.65845 -11.51941 -11.38470 -11.05373 -10.84548 -10.63486 -10.57283 -10.27499 -10.18011 -9.96814 -9.69858 -9.63710 -9.46939 -9.05874 -8.65357 -7.02500 -6.00024 -3.35926 1.77792 2.21801 2.50578 2.91448 3.29212 3.46297 3.49258 3.51988 3.76824 4.20333 4.28918 4.47903 4.49282 4.63027 4.75446 4.77497 4.83077 4.88697 5.09621 5.11916 5.18184 5.20274 5.23919 5.35435 5.38631 5.38822 5.56721 5.58497 5.71830 5.73460 5.77747 5.98027 6.06396 6.07843 6.08201 6.24122 6.26056 6.34508 6.39890 6.52581 6.53107 6.65780 6.67403 6.92717 7.44469 7.51002 7.90356 8.14949 8.26660 8.88464 9.67160 10.05169 11.15810 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.002364 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.585522 B =11841.263791 C =12483.897502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.141 4.141 5 C 0.059 3.941 6 H 0.104 0.896 7 C 0.515 3.485 8 O -0.524 6.524 9 N -0.720 5.720 10 C 0.129 3.871 11 C -0.119 4.119 12 H 0.079 0.921 13 C -0.101 4.101 14 C -0.134 4.134 15 C 0.123 3.877 16 N -0.606 5.606 17 C -0.261 4.261 18 H 0.085 0.915 19 C 0.024 3.976 20 N -0.908 5.908 21 Si 0.883 3.117 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.155 3.845 26 O -0.319 6.319 27 C 0.093 3.907 28 H 0.125 0.875 29 C 0.464 3.536 30 O -0.494 6.494 31 O -0.514 6.514 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.404 0.596 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.024 0.976 45 H 0.072 0.928 46 H 0.263 0.737 47 H 0.060 0.940 48 H 0.024 0.976 49 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.998 -1.685 16.752 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.114 0.886 4 C -0.179 4.179 5 C -0.002 4.002 6 H 0.122 0.878 7 C 0.299 3.701 8 O -0.399 6.399 9 N -0.373 5.373 10 C 0.005 3.995 11 C -0.139 4.139 12 H 0.097 0.903 13 C -0.139 4.139 14 C -0.173 4.173 15 C -0.002 4.002 16 N -0.329 5.329 17 C -0.390 4.390 18 H 0.102 0.898 19 C -0.175 4.175 20 N -0.551 5.551 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.196 1.196 25 C 0.029 3.971 26 O -0.236 6.236 27 C 0.033 3.967 28 H 0.142 0.858 29 C 0.304 3.696 30 O -0.380 6.380 31 O -0.327 6.327 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.240 0.760 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.042 0.958 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.042 0.958 49 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -15.563 -2.720 16.965 23.183 hybrid contribution 1.124 0.393 -0.134 1.199 sum -14.439 -2.328 16.831 22.298 Atomic orbital electron populations 1.21768 0.91979 1.03022 1.03321 1.22656 0.98418 0.99911 0.91822 0.88609 1.23414 0.94619 1.01149 0.98742 1.22985 0.98833 0.96060 0.82334 0.87806 1.20145 0.77906 0.89846 0.82159 1.90727 1.52343 1.31083 1.65752 1.45953 1.67689 1.13251 1.10423 1.21464 0.99662 0.86081 0.92277 1.21949 1.01063 0.98326 0.92600 0.90302 1.21347 1.00639 0.95819 0.96109 1.21991 1.00656 0.99139 0.95511 1.21352 0.94465 0.88217 0.96163 1.44332 1.80725 1.02289 1.05546 1.18880 1.19625 0.85411 1.15038 0.89758 1.25269 0.98321 0.96286 0.97633 1.69832 1.38329 1.28887 1.18048 0.86945 0.83360 0.80232 0.78058 1.21621 1.23191 1.19577 1.20938 0.93073 0.96653 0.86423 1.88672 1.48268 1.63329 1.23315 1.22364 0.89645 0.92246 0.92401 0.85756 1.23851 0.84016 0.79529 0.82182 1.90772 1.19642 1.64608 1.62954 1.84490 1.43397 1.53005 1.51823 0.91147 0.91198 0.91721 0.87803 0.88816 0.76043 0.91670 0.91395 0.92291 0.92738 0.92677 0.91710 0.95778 0.91021 0.92738 0.92197 0.95791 0.72862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.14 37.16 0.34 -0.31 16 2 C -0.11 -0.69 3.12 -88.67 -0.28 -0.97 16 3 H 0.10 0.57 7.84 -51.93 -0.41 0.16 16 4 C -0.14 -0.99 6.02 -24.48 -0.15 -1.14 16 5 C 0.06 0.63 3.86 -26.85 -0.10 0.52 16 6 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 7 C 0.52 6.86 7.17 -10.98 -0.08 6.78 16 8 O -0.52 -9.19 16.55 -13.77 -0.23 -9.42 16 9 N -0.72 -8.50 5.33 -60.29 -0.32 -8.82 16 10 C 0.13 1.67 5.07 -4.04 -0.02 1.65 16 11 C -0.12 -1.71 2.37 -90.50 -0.21 -1.93 16 12 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.10 -1.45 5.17 -26.69 -0.14 -1.58 16 14 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 15 C 0.12 2.60 4.20 -3.71 -0.02 2.58 16 16 N -0.61 -13.68 2.77 -172.32 -0.48 -14.15 16 17 C -0.26 -7.00 10.04 -15.06 -0.15 -7.15 16 18 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 19 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 20 N -0.91 -27.22 13.97 55.49 0.78 -26.45 16 21 Si 0.88 22.11 24.35 -169.99 -4.14 17.97 16 22 H -0.29 -6.96 6.62 56.52 0.37 -6.58 16 23 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 24 H -0.27 -6.70 6.63 56.52 0.37 -6.33 16 25 C 0.16 2.81 5.60 -3.71 -0.02 2.79 16 26 O -0.32 -4.12 9.82 -64.44 -0.63 -4.75 16 27 C 0.09 0.83 3.66 -27.16 -0.10 0.73 16 28 H 0.13 0.89 7.81 -51.93 -0.41 0.49 16 29 C 0.46 4.49 7.52 36.01 0.27 4.76 16 30 O -0.49 -6.87 17.28 -25.41 -0.44 -7.31 16 31 O -0.51 -3.12 13.42 -39.24 -0.53 -3.65 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.28 8.12 -51.93 -0.42 -0.14 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.66 7.93 -51.93 -0.41 0.24 16 37 H 0.40 4.08 7.70 -40.82 -0.31 3.77 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.02 0.51 7.07 -51.93 -0.37 0.14 16 45 H 0.07 1.67 4.50 -51.93 -0.23 1.43 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.06 1.04 7.14 -51.93 -0.37 0.67 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.41 0.93 9.10 45.56 0.41 1.34 16 LS Contribution 389.39 15.07 5.87 5.87 Total: -1.00 -36.73 389.39 -8.23 -44.96 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.20 Total: 0.83 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.91 Total: 4.92 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.02 Total: -49.42 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -1.83 Total: -25.13 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.73 -8.23 -44.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599875251.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.550 kcal (2) G-P(sol) polarization free energy of solvation -36.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds