Wall clock time and date at job start Tue Mar 31 2020 23:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.74435 * 2 1 4 4 C 1.52931 * 109.51900 * 239.81403 * 2 1 3 5 5 N 1.46965 * 108.68705 * 190.95199 * 4 2 1 6 6 C 1.34772 * 120.59603 * 235.07901 * 5 4 2 7 7 O 1.21280 * 120.00193 * 175.26307 * 6 5 4 8 8 C 1.50704 * 120.00080 * 355.25821 * 6 5 4 9 9 C 1.50696 * 109.54132 * 308.58147 * 8 6 5 10 10 O 1.20832 * 120.00345 * 126.60419 * 9 8 6 11 11 O 1.34231 * 120.00279 * 306.60351 * 9 8 6 12 12 C 1.53174 * 109.54754 * 188.31541 * 8 6 5 13 13 C 1.53102 * 109.16214 * 297.11329 * 12 8 6 14 14 O 1.42894 * 109.41305 * 302.39292 * 13 12 8 15 15 C 1.42909 * 114.10441 * 61.15466 * 14 13 12 16 16 C 1.53093 * 109.41406 * 298.84582 * 15 14 13 17 17 C 1.46969 * 118.81345 * 55.09714 * 5 4 2 18 18 C 1.53369 * 108.63675 * 304.77881 * 17 5 4 19 19 H 1.09005 * 109.74400 * 289.59186 * 18 17 5 20 20 C 1.52994 * 109.61313 * 169.16629 * 18 17 5 21 21 N 1.46958 * 109.60894 * 120.43353 * 2 1 3 22 22 C 1.36932 * 120.59931 * 354.98562 * 21 2 1 23 23 H 1.08006 * 120.00118 * 126.37599 * 22 21 2 24 24 C 1.38807 * 120.00078 * 306.38414 * 22 21 2 25 25 N 1.31621 * 120.00286 * 342.24728 * 24 22 21 26 26 Si 1.86808 * 120.00094 * 162.24785 * 24 22 21 27 27 H 1.48504 * 109.46816 * 269.99835 * 26 24 22 28 28 H 1.48496 * 109.47015 * 29.99860 * 26 24 22 29 29 H 1.48504 * 109.47011 * 150.00093 * 26 24 22 30 30 H 1.09002 * 109.46691 * 308.88330 * 1 2 3 31 31 H 1.08999 * 109.47588 * 68.88850 * 1 2 3 32 32 H 1.09002 * 109.47233 * 188.89386 * 1 2 3 33 33 H 1.09002 * 109.68804 * 71.13239 * 4 2 1 34 34 H 1.09001 * 109.48060 * 310.64702 * 4 2 1 35 35 H 0.96700 * 117.00358 * 180.02562 * 11 9 8 36 36 H 1.09005 * 109.52291 * 57.01382 * 12 8 6 37 37 H 1.08994 * 109.52607 * 177.20711 * 12 8 6 38 38 H 1.08990 * 109.48026 * 182.40766 * 13 12 8 39 39 H 1.09003 * 109.47674 * 62.37516 * 13 12 8 40 40 H 1.08995 * 109.48202 * 178.85544 * 15 14 13 41 41 H 1.09004 * 109.48233 * 58.82582 * 15 14 13 42 42 H 1.08996 * 109.51920 * 297.69810 * 16 15 14 43 43 H 1.08997 * 109.57271 * 177.54033 * 16 15 14 44 44 H 1.08997 * 109.61241 * 185.02568 * 17 5 4 45 45 H 1.09001 * 109.60791 * 64.51705 * 17 5 4 46 46 H 1.09000 * 109.47237 * 300.84986 * 20 18 17 47 47 H 1.08999 * 109.47037 * 60.85087 * 20 18 17 48 48 H 1.09002 * 109.46988 * 180.85117 * 20 18 17 49 49 H 0.96997 * 120.00574 * 175.08624 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0410 -0.7248 -1.2460 5 7 3.4866 -0.9469 -1.1018 6 6 4.3450 -0.5113 -2.0451 7 8 5.5406 -0.6235 -1.8754 8 6 3.8191 0.1152 -3.3109 9 6 2.7886 -0.7921 -3.9320 10 8 1.6923 -0.3635 -4.2052 11 8 3.0883 -2.0765 -4.1817 12 6 4.9738 0.3307 -4.2941 13 6 5.9760 1.3144 -3.6843 14 8 5.3107 2.5411 -3.3771 15 6 4.2520 2.4087 -2.4264 16 6 3.1805 1.4690 -2.9857 17 6 3.9795 -1.6530 0.0892 18 6 3.4688 -0.9234 1.3378 19 1 3.9781 0.0351 1.4383 20 6 3.7357 -1.7791 2.5777 21 7 2.0232 -0.7012 1.1936 22 6 1.1511 -1.1446 2.1517 23 1 1.1704 -2.1788 2.4625 24 6 0.2421 -0.2650 2.7233 25 7 0.4305 1.0338 2.6225 26 14 -1.2486 -0.9244 3.6358 27 1 -2.3790 -1.0849 2.6862 28 1 -0.9177 -2.2406 4.2385 29 1 -1.6341 0.0282 4.7078 30 1 -0.3633 0.6451 0.8000 31 1 -0.3634 0.3701 -0.9586 32 1 -0.3634 -1.0153 0.1589 33 1 1.8509 -0.1151 -2.1293 34 1 1.5315 -1.6834 -1.3434 35 1 2.3950 -2.6194 -4.5812 36 1 5.4692 -0.6206 -4.4883 37 1 4.5860 0.7378 -5.2278 38 1 6.7783 1.5045 -4.3971 39 1 6.3936 0.8889 -2.7718 40 1 3.8124 3.3871 -2.2332 41 1 4.6469 1.9976 -1.4974 42 1 2.7565 1.8991 -3.8930 43 1 2.3927 1.3316 -2.2450 44 1 5.0694 -1.6565 0.0875 45 1 3.6079 -2.6777 0.0868 46 1 3.2306 -2.7392 2.4722 47 1 4.8083 -1.9424 2.6824 48 1 3.3584 -1.2652 3.4619 49 1 -0.2398 1.6488 2.9591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603438697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:12 Heat of formation + Delta-G solvation = -144.777065 kcal Electronic energy + Delta-G solvation = -33802.747723 eV Core-core repulsion = 29537.674365 eV Total energy + Delta-G solvation = -4265.073358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.95983 -40.77215 -39.89305 -38.76712 -37.38511 -36.02711 -35.33999 -34.41188 -33.12464 -32.19940 -29.70421 -28.50648 -27.61142 -27.12376 -25.60944 -24.84854 -23.38645 -22.84076 -22.12762 -21.26377 -20.08941 -19.43030 -18.64995 -18.10588 -17.67509 -17.42996 -17.03285 -16.79686 -16.61089 -16.46477 -16.26314 -15.99538 -15.67338 -15.37772 -14.98659 -14.89921 -14.71224 -14.33152 -13.91073 -13.87928 -13.57372 -13.45068 -13.31765 -13.24929 -13.00570 -12.82733 -12.62840 -12.53074 -12.39207 -12.33372 -12.28547 -12.21508 -12.11885 -11.95443 -11.75435 -11.69513 -11.54687 -11.48316 -10.89655 -10.44850 -10.21454 -9.75207 -8.39949 -7.72174 -5.62845 0.84023 1.22871 1.45615 1.50497 1.55560 1.77219 1.83349 2.49037 2.84231 3.07110 3.23112 3.26376 3.39524 3.45793 3.79361 3.95275 4.03109 4.05650 4.12617 4.26024 4.33658 4.35322 4.40142 4.44046 4.49564 4.52824 4.65573 4.68262 4.69946 4.75938 4.84661 4.85562 4.91735 4.93344 4.95842 5.03908 5.16247 5.31236 5.35791 5.37294 5.56612 5.58560 5.73839 5.88055 6.12038 6.27273 6.55919 6.76223 6.88689 7.20860 7.74338 8.47722 9.12886 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.004324 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.004503 B = 6474.242135 C = 6704.053004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.188 3.812 3 H 0.006 0.994 4 C 0.077 3.923 5 N -0.593 5.593 6 C 0.528 3.472 7 O -0.550 6.550 8 C -0.072 4.072 9 C 0.502 3.498 10 O -0.517 6.517 11 O -0.503 6.503 12 C -0.120 4.120 13 C 0.046 3.954 14 O -0.387 6.387 15 C 0.066 3.934 16 C -0.142 4.142 17 C 0.109 3.891 18 C 0.152 3.848 19 H 0.004 0.996 20 C -0.117 4.117 21 N -0.588 5.588 22 C -0.260 4.260 23 H 0.051 0.949 24 C 0.000 4.000 25 N -0.904 5.904 26 Si 0.936 3.064 27 H -0.279 1.279 28 H -0.269 1.269 29 H -0.298 1.298 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.433 0.567 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.066 0.934 40 H 0.120 0.880 41 H 0.032 0.968 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.042 0.958 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.353 -3.346 -14.182 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.082 3.918 3 H 0.024 0.976 4 C -0.047 4.047 5 N -0.323 5.323 6 C 0.315 3.685 7 O -0.429 6.429 8 C -0.077 4.077 9 C 0.344 3.656 10 O -0.406 6.406 11 O -0.317 6.317 12 C -0.158 4.158 13 C -0.030 4.030 14 O -0.306 6.306 15 C -0.011 4.011 16 C -0.180 4.180 17 C -0.014 4.014 18 C 0.045 3.955 19 H 0.022 0.978 20 C -0.175 4.175 21 N -0.313 5.313 22 C -0.390 4.390 23 H 0.068 0.932 24 C -0.199 4.199 25 N -0.546 5.546 26 Si 0.764 3.236 27 H -0.205 1.205 28 H -0.194 1.194 29 H -0.224 1.224 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.296 0.704 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.138 0.862 41 H 0.050 0.950 42 H 0.127 0.873 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.061 0.939 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.980 -2.774 -13.923 15.820 hybrid contribution -1.722 -0.639 0.754 1.986 sum 5.258 -3.413 -13.169 14.585 Atomic orbital electron populations 1.21948 0.94831 1.02176 1.00911 1.20367 0.94020 0.92337 0.85119 0.97589 1.22904 0.79367 1.01426 1.00965 1.48079 1.07420 1.55721 1.21120 1.20085 0.86208 0.77969 0.84247 1.90587 1.15426 1.57370 1.79548 1.20902 0.96902 0.94954 0.94932 1.22570 0.86759 0.81762 0.74470 1.90759 1.23782 1.76139 1.49913 1.84506 1.50033 1.21860 1.75277 1.22096 0.93971 1.02763 0.96988 1.23021 0.94436 0.83783 1.01777 1.87894 1.48728 1.31887 1.62058 1.22549 0.87080 1.00956 0.90531 1.22445 0.99087 0.91630 1.04801 1.22195 0.99681 0.95444 0.84116 1.20963 0.85842 0.95073 0.93598 0.97814 1.21537 1.00239 0.99196 0.96482 1.44169 1.00279 1.67376 1.19486 1.18815 1.13352 0.91916 1.14921 0.93158 1.26033 1.02339 0.95073 0.96473 1.70229 1.33712 1.01980 1.48638 0.85786 0.81302 0.78088 0.78423 1.20512 1.19362 1.22426 0.90962 0.93514 0.93560 0.88054 0.91680 0.70384 0.88399 0.88096 0.85877 0.91580 0.86216 0.95012 0.87304 0.89718 0.89285 0.90900 0.92555 0.91311 0.93923 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 7.81 71.98 0.56 -5.48 16 2 C 0.19 8.07 3.05 44.88 0.14 8.21 16 3 H 0.01 0.30 7.92 -2.39 -0.02 0.28 16 4 C 0.08 2.72 4.10 86.27 0.35 3.07 16 5 N -0.59 -20.39 2.94 -818.86 -2.40 -22.80 16 6 C 0.53 16.98 5.09 87.66 0.45 17.43 16 7 O -0.55 -19.36 13.02 -3.03 -0.04 -19.40 16 8 C -0.07 -1.92 0.46 -53.56 -0.02 -1.95 16 9 C 0.50 12.63 4.88 71.23 0.35 12.98 16 10 O -0.52 -14.63 15.53 21.95 0.34 -14.29 16 11 O -0.50 -10.06 13.22 -51.42 -0.68 -10.74 16 12 C -0.12 -2.64 4.58 30.69 0.14 -2.50 16 13 C 0.05 1.08 6.56 72.02 0.47 1.56 16 14 O -0.39 -10.31 10.76 -148.98 -1.60 -11.92 16 15 C 0.07 1.79 6.62 72.01 0.48 2.27 16 16 C -0.14 -3.81 4.08 30.69 0.13 -3.68 16 17 C 0.11 3.84 5.91 86.41 0.51 4.35 16 18 C 0.15 6.23 3.65 45.02 0.16 6.39 16 19 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 20 C -0.12 -4.30 8.18 71.98 0.59 -3.71 16 21 N -0.59 -27.09 2.75 -651.53 -1.79 -28.89 16 22 C -0.26 -12.90 6.63 84.03 0.56 -12.34 16 23 H 0.05 2.53 7.15 -2.91 -0.02 2.50 16 24 C 0.00 0.01 3.44 84.86 0.29 0.30 16 25 N -0.90 -49.25 11.38 21.65 0.25 -49.01 16 26 Si 0.94 41.27 29.59 68.60 2.03 43.30 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 30 H 0.07 3.53 4.85 -2.39 -0.01 3.52 16 31 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 32 H 0.05 2.01 7.48 -2.39 -0.02 1.99 16 33 H 0.10 3.32 2.28 -2.39 -0.01 3.31 16 34 H 0.06 2.30 8.11 -2.39 -0.02 2.28 16 35 H 0.43 4.52 9.10 -74.06 -0.67 3.84 16 36 H 0.10 2.03 8.13 -2.38 -0.02 2.01 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.07 1.90 5.51 -2.39 -0.01 1.89 16 40 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.03 1.02 7.38 -2.39 -0.02 1.00 16 42 H 0.11 2.61 7.94 -2.39 -0.02 2.59 16 43 H 0.08 2.56 4.99 -2.39 -0.01 2.55 16 44 H 0.09 3.04 6.99 -2.39 -0.02 3.02 16 45 H 0.07 2.45 8.12 -2.39 -0.02 2.44 16 46 H 0.06 2.02 7.48 -2.39 -0.02 2.00 16 47 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.04 1.77 7.71 -2.39 -0.02 1.75 16 49 H 0.25 13.38 8.32 -92.71 -0.77 12.61 16 Total: -1.00 -62.95 363.83 1.56 -61.40 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.31 Total: 25.44 kcal Atomic # 6 Polarization: 21.76 SS G_CDS: 5.15 Total: 26.90 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -3.95 Total: -100.69 kcal Atomic # 8 Polarization: -54.36 SS G_CDS: -1.98 Total: -56.35 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -62.95 1.56 -61.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603438697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.382 kcal (2) G-P(sol) polarization free energy of solvation -62.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds