Wall clock time and date at job start Tue Mar 31 2020 23:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46671 * 2 1 4 4 C 1.50693 * 109.47132 * 240.00124 * 2 1 3 5 5 H 1.08007 * 119.99798 * 239.99967 * 4 2 1 6 6 C 1.37873 * 120.00255 * 59.99766 * 4 2 1 7 7 N 1.31519 * 120.00030 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00177 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47122 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.46973 * 300.00016 * 8 6 4 11 11 H 1.48493 * 109.47232 * 60.00043 * 8 6 4 12 12 C 1.50705 * 109.46998 * 119.99864 * 2 1 3 13 13 O 1.20818 * 119.99460 * 120.00723 * 12 2 1 14 14 O 1.34229 * 120.00168 * 300.00064 * 12 2 1 15 15 C 1.45195 * 116.99992 * 180.02562 * 14 12 2 16 16 C 1.50702 * 109.46795 * 180.02562 * 15 14 12 17 17 O 1.21274 * 120.00277 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99376 * 180.02562 * 16 15 14 19 19 C 1.46504 * 119.99520 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.47150 * 324.99914 * 19 18 16 21 21 C 1.53006 * 109.47160 * 85.00355 * 19 18 16 22 22 C 1.50702 * 109.47123 * 204.99863 * 19 18 16 23 23 O 1.21283 * 119.99744 * 333.55583 * 22 19 18 24 24 N 1.34769 * 120.00136 * 153.55363 * 22 19 18 25 25 C 1.46930 * 120.63199 * 4.73696 * 24 22 19 26 26 C 1.53614 * 108.54498 * 126.36746 * 25 24 22 27 27 C 1.53039 * 109.24453 * 54.85946 * 26 25 24 28 28 C 1.53047 * 109.53512 * 298.50862 * 27 26 25 29 29 C 1.46926 * 120.63456 * 185.01716 * 24 22 19 30 30 H 1.09000 * 109.46671 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47068 * 299.99852 * 1 2 3 32 32 H 1.09000 * 109.46963 * 60.00387 * 1 2 3 33 33 H 0.96999 * 119.99913 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47076 * 299.99901 * 15 14 12 35 35 H 1.08994 * 109.46914 * 60.00227 * 15 14 12 36 36 H 0.96994 * 120.00497 * 359.97438 * 18 16 15 37 37 H 1.08997 * 109.47095 * 179.19998 * 21 19 18 38 38 H 1.09000 * 109.46641 * 299.19697 * 21 19 18 39 39 H 1.09003 * 109.47036 * 59.19361 * 21 19 18 40 40 H 1.08999 * 109.58914 * 246.20091 * 25 24 22 41 41 H 1.09002 * 109.58530 * 6.62332 * 25 24 22 42 42 H 1.08998 * 109.63497 * 294.86535 * 26 25 24 43 43 H 1.09007 * 109.43621 * 174.72429 * 26 25 24 44 44 H 1.08999 * 109.46122 * 178.49113 * 27 26 25 45 45 H 1.08996 * 109.46124 * 58.52984 * 27 26 25 46 46 H 1.08992 * 109.49667 * 301.41281 * 28 27 26 47 47 H 1.09003 * 109.49336 * 181.31559 * 28 27 26 48 48 H 1.09006 * 109.58165 * 353.37107 * 29 24 22 49 49 H 1.08995 * 109.58903 * 113.79752 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8280 -0.4192 -5.2204 10 1 3.8076 -1.1188 -4.0077 11 1 1.8282 -2.5197 -4.0082 12 6 2.0324 -0.7104 1.2305 13 8 2.7271 -1.6926 1.1196 14 8 1.7081 -0.2518 2.4497 15 6 2.2277 -0.9857 3.5897 16 6 1.7626 -0.3292 4.8640 17 8 1.0618 0.6595 4.8160 18 7 2.1255 -0.8409 6.0569 19 6 1.6738 -0.2024 7.2957 20 1 1.6313 0.8775 7.1533 21 6 0.2824 -0.7239 7.6604 22 6 2.6385 -0.5248 8.4077 23 8 3.2976 -1.5419 8.3627 24 7 2.7687 0.3169 9.4521 25 6 1.9044 1.4990 9.5732 26 6 1.2352 1.4754 10.9557 27 6 2.3138 1.3726 12.0365 28 6 3.0950 0.0687 11.8576 29 6 3.7816 0.0734 10.4881 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.7089 1.1614 -3.4844 34 1 1.8643 -2.0128 3.5569 35 1 3.3171 -0.9845 3.5566 36 1 2.6856 -1.6318 6.0952 37 1 -0.0477 -0.2595 8.5896 38 1 -0.4183 -0.4782 6.8624 39 1 0.3220 -1.8057 7.7887 40 1 2.5050 2.4028 9.4702 41 1 1.1410 1.4746 8.7956 42 1 0.5678 0.6164 11.0249 43 1 0.6641 2.3929 11.0979 44 1 1.8444 1.3826 13.0201 45 1 2.9954 2.2189 11.9510 46 1 2.4100 -0.7769 11.9183 47 1 3.8476 -0.0149 12.6417 48 1 4.2570 -0.8920 10.3145 49 1 4.5320 0.8633 10.4583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649877768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:02 Heat of formation + Delta-G solvation = -165.992253 kcal Electronic energy + Delta-G solvation = -29681.501969 eV Core-core repulsion = 25415.508652 eV Total energy + Delta-G solvation = -4265.993317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05619 -39.95580 -39.11453 -37.85321 -35.76819 -35.15659 -33.87389 -33.53030 -31.97012 -31.06778 -30.56829 -28.10922 -26.38258 -25.17561 -24.50707 -23.59092 -22.90621 -21.46780 -20.63322 -19.84485 -19.48399 -18.16265 -17.24312 -16.81145 -16.45998 -16.24550 -15.83714 -15.78993 -15.68799 -15.24193 -14.99441 -14.78910 -14.58736 -14.35731 -14.29020 -13.77702 -13.68444 -13.46370 -13.03392 -12.87947 -12.68571 -12.63881 -12.49226 -12.09728 -11.96499 -11.83693 -11.52732 -11.49896 -11.27330 -11.12561 -11.02235 -10.80795 -10.67051 -10.34248 -10.20191 -10.17595 -10.05693 -9.92165 -9.42189 -9.17141 -9.16347 -9.03045 -8.42836 -6.08286 -4.14239 2.01122 2.25581 2.49584 2.76716 3.25922 3.34296 3.36892 3.41289 3.75323 3.86132 4.17341 4.30597 4.35250 4.43223 4.50048 4.58423 4.68362 4.72698 4.77132 4.88892 4.97171 5.15074 5.22712 5.24197 5.24728 5.27497 5.28500 5.29269 5.34769 5.44192 5.49149 5.53877 5.74683 5.80615 5.95670 6.00886 6.10768 6.71200 6.82342 6.90995 6.91548 7.13082 7.26242 7.46372 7.61277 7.76823 7.95856 8.05333 8.15661 8.79825 8.93884 9.51000 10.98962 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.032828 B = 0.001814 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.736570 B =15431.095675 C =15825.760500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 H 0.066 0.934 4 C -0.514 4.514 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.467 3.533 13 O -0.516 6.516 14 O -0.342 6.342 15 C 0.045 3.955 16 C 0.522 3.478 17 O -0.512 6.512 18 N -0.719 5.719 19 C 0.128 3.872 20 H 0.112 0.888 21 C -0.160 4.160 22 C 0.517 3.483 23 O -0.534 6.534 24 N -0.608 5.608 25 C 0.098 3.902 26 C -0.135 4.135 27 C -0.121 4.121 28 C -0.135 4.135 29 C 0.109 3.891 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.096 0.904 33 H 0.264 0.736 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.411 0.589 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 1.776 31.289 31.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.552 4.552 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.734 3.266 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.403 6.403 14 O -0.259 6.259 15 C -0.033 4.033 16 C 0.308 3.692 17 O -0.385 6.385 18 N -0.376 5.376 19 C 0.020 3.980 20 H 0.130 0.870 21 C -0.219 4.219 22 C 0.304 3.696 23 O -0.410 6.410 24 N -0.342 5.342 25 C -0.025 4.025 26 C -0.173 4.173 27 C -0.159 4.159 28 C -0.173 4.173 29 C -0.013 4.013 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.248 0.752 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.671 1.774 31.048 31.106 hybrid contribution 0.691 -0.884 -0.576 1.261 sum 1.362 0.890 30.473 30.516 Atomic orbital electron populations 1.21741 0.95429 1.00073 1.01961 1.18785 0.95015 0.97047 0.85039 0.91598 1.21085 1.32081 1.13292 0.88727 0.90658 1.24941 0.94912 0.95027 0.99117 1.69879 1.36372 1.22709 1.23972 0.86418 0.79256 0.79634 0.81310 1.21224 1.20107 1.20101 1.25559 0.76478 0.83249 0.83583 1.90502 1.36477 1.26764 1.86585 1.86727 1.69933 1.54802 1.14408 1.22399 1.00481 0.96406 0.83996 1.20320 0.80221 0.84329 0.84316 1.90738 1.35904 1.24914 1.86977 1.45661 1.55103 1.33059 1.03806 1.20770 0.93505 1.00418 0.83328 0.87032 1.22153 0.94577 1.02347 1.02806 1.20645 0.82922 0.83022 0.82963 1.90701 1.46827 1.25408 1.78113 1.48043 1.36514 1.25879 1.23778 1.22029 0.94069 0.87804 0.98583 1.21998 0.98188 1.03061 0.94102 1.21532 0.97775 0.97760 0.98835 1.21918 1.00205 0.98471 0.96693 1.21650 0.90054 1.03248 0.86314 0.95004 0.95473 0.88528 0.92615 0.88546 0.88591 0.75174 0.91090 0.90115 0.91381 0.90648 0.89027 0.91237 0.90265 0.91481 0.91577 0.91416 0.90577 0.88785 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.90 37.16 0.33 -2.94 16 2 C 0.06 1.56 2.74 -92.92 -0.25 1.30 16 3 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 4 C -0.51 -14.52 8.37 -34.45 -0.29 -14.81 16 5 H 0.08 2.20 6.76 -52.48 -0.35 1.84 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.47 11.12 7.25 36.01 0.26 11.38 16 13 O -0.52 -12.98 15.21 -18.74 -0.29 -13.27 16 14 O -0.34 -7.15 9.66 -45.90 -0.44 -7.60 16 15 C 0.05 0.72 5.94 36.01 0.21 0.93 16 16 C 0.52 7.69 7.87 -10.98 -0.09 7.60 16 17 O -0.51 -9.21 16.16 -14.10 -0.23 -9.44 16 18 N -0.72 -8.21 5.06 -54.93 -0.28 -8.49 16 19 C 0.13 1.25 2.11 -69.08 -0.15 1.11 16 20 H 0.11 1.09 6.08 -51.93 -0.32 0.77 16 21 C -0.16 -1.34 9.24 37.16 0.34 -0.99 16 22 C 0.52 5.14 6.89 -10.99 -0.08 5.06 16 23 O -0.53 -6.84 15.45 5.55 0.09 -6.75 16 24 N -0.61 -4.52 2.97 -172.50 -0.51 -5.03 16 25 C 0.10 0.50 6.03 -3.49 -0.02 0.48 16 26 C -0.14 -0.53 6.10 -26.39 -0.16 -0.69 16 27 C -0.12 -0.46 5.88 -26.69 -0.16 -0.61 16 28 C -0.13 -0.63 6.08 -26.61 -0.16 -0.79 16 29 C 0.11 0.71 6.44 -3.71 -0.02 0.68 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.59 8.11 -51.93 -0.42 0.17 16 32 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.10 1.38 8.13 -51.93 -0.42 0.96 16 35 H 0.10 1.39 8.13 -51.93 -0.42 0.97 16 36 H 0.41 4.28 7.80 -40.82 -0.32 3.96 16 37 H 0.07 0.43 7.27 -51.93 -0.38 0.06 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.45 4.90 -51.93 -0.25 0.20 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.09 0.76 7.00 -51.93 -0.36 0.39 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -34.06 398.10 -8.15 -42.21 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.77 Total: 0.85 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -0.32 Total: 9.33 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.16 Total: -37.92 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.87 Total: -37.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.06 -8.15 -42.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649877768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.781 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds