Wall clock time and date at job start Tue Mar 31 2020 23:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47181 * 2 1 4 4 N 1.46503 * 109.47420 * 120.00212 * 2 1 3 5 5 C 1.34777 * 119.99658 * 274.99728 * 4 2 1 6 6 O 1.21276 * 120.00225 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99719 * 180.02562 * 5 4 2 8 8 O 1.45199 * 109.46897 * 180.02562 * 7 5 4 9 9 C 1.34233 * 116.99805 * 179.97438 * 8 7 5 10 10 O 1.20822 * 119.99815 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99716 * 179.97438 * 9 8 7 12 12 H 1.08996 * 109.47442 * 300.00384 * 11 9 8 13 13 C 1.53000 * 109.47005 * 60.00758 * 11 9 8 14 14 C 1.50705 * 109.46651 * 180.02562 * 11 9 8 15 15 H 1.08000 * 120.00335 * 0.02562 * 14 11 9 16 16 C 1.37877 * 119.99589 * 180.02562 * 14 11 9 17 17 N 1.31510 * 120.00309 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99859 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47151 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47065 * 120.00080 * 18 16 14 21 21 H 1.48493 * 109.47211 * 240.00190 * 18 16 14 22 22 C 1.50707 * 109.46902 * 240.00141 * 2 1 3 23 23 O 1.21283 * 119.99889 * 257.22044 * 22 2 1 24 24 N 1.34770 * 119.99897 * 77.22683 * 22 2 1 25 25 C 1.46926 * 120.63412 * 5.03092 * 24 22 2 26 26 C 1.53626 * 108.54573 * 126.36904 * 25 24 22 27 27 C 1.53046 * 109.23881 * 54.85789 * 26 25 24 28 28 C 1.53036 * 109.53894 * 298.51164 * 27 26 25 29 29 C 1.46934 * 120.63041 * 185.31419 * 24 22 2 30 30 H 1.08994 * 109.46870 * 178.85541 * 1 2 3 31 31 H 1.09002 * 109.46449 * 298.84859 * 1 2 3 32 32 H 1.08995 * 109.47094 * 58.85395 * 1 2 3 33 33 H 0.96994 * 120.00210 * 95.00024 * 4 2 1 34 34 H 1.08993 * 109.46920 * 60.00211 * 7 5 4 35 35 H 1.09004 * 109.46845 * 299.99755 * 7 5 4 36 36 H 1.09008 * 109.46884 * 299.99605 * 13 11 9 37 37 H 1.08996 * 109.47325 * 59.99555 * 13 11 9 38 38 H 1.08996 * 109.47078 * 179.97438 * 13 11 9 39 39 H 0.97005 * 120.00134 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.58829 * 246.20635 * 25 24 22 41 41 H 1.08999 * 109.58640 * 6.62900 * 25 24 22 42 42 H 1.08999 * 109.63322 * 294.87048 * 26 25 24 43 43 H 1.08996 * 109.42879 * 174.72517 * 26 25 24 44 44 H 1.08997 * 109.45980 * 178.48993 * 27 26 25 45 45 H 1.08996 * 109.45957 * 58.53343 * 27 26 25 46 46 H 1.09001 * 109.49967 * 301.41705 * 28 27 26 47 47 H 1.08993 * 109.50024 * 181.31797 * 28 27 26 48 48 H 1.08995 * 109.58159 * 353.36868 * 29 24 22 49 49 H 1.08995 * 109.58594 * 113.79373 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6502 -0.7286 3.5874 8 8 2.6984 0.2043 4.6990 9 6 3.1275 -0.2739 5.8776 10 8 3.4524 -1.4334 5.9769 11 6 3.2049 0.6358 7.0766 12 1 3.8850 1.4605 6.8637 13 6 1.8130 1.1897 7.3873 14 6 3.7136 -0.1405 8.2640 15 1 3.9569 -1.1877 8.1606 16 6 3.8684 0.4862 9.4823 17 7 3.5718 1.7612 9.6083 18 14 4.4983 -0.4761 10.9543 19 1 4.7556 -1.8825 10.5529 20 1 5.7584 0.1377 11.4445 21 1 3.4809 -0.4488 12.0356 22 6 2.0323 -0.7104 -1.2305 23 8 2.4535 -1.8447 -1.1465 24 7 2.0136 -0.0853 -2.4243 25 6 1.6104 1.3240 -2.5252 26 6 2.7173 2.0977 -3.2574 27 6 2.9959 1.4261 -4.6041 28 6 3.4830 -0.0058 -4.3709 29 6 2.3901 -0.8018 -3.6506 30 1 -0.3633 -1.0274 -0.0205 31 1 -0.3632 0.4959 0.9002 32 1 -0.3633 0.5315 -0.8795 33 1 2.2491 -1.6317 1.1526 34 1 3.6494 -1.1203 3.3977 35 1 1.9779 -1.5509 3.8325 36 1 1.4454 1.7513 6.5283 37 1 1.1329 0.3650 7.6002 38 1 1.8689 1.8473 8.2547 39 1 3.6810 2.2022 10.4654 40 1 0.6778 1.3981 -3.0844 41 1 1.4735 1.7373 -1.5260 42 1 3.6257 2.0954 -2.6550 43 1 2.3928 3.1249 -3.4234 44 1 3.7620 1.9878 -5.1385 45 1 2.0810 1.4065 -5.1963 46 1 4.3841 0.0117 -3.7580 47 1 3.7035 -0.4758 -5.3293 48 1 2.7678 -1.7915 -3.3940 49 1 1.5198 -0.8975 -4.2997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649877775.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:04 Heat of formation + Delta-G solvation = -165.531437 kcal Electronic energy + Delta-G solvation = -29719.408494 eV Core-core repulsion = 25453.435159 eV Total energy + Delta-G solvation = -4265.973335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.05220 -39.94880 -39.10853 -37.84269 -35.76331 -35.15436 -33.87416 -33.55155 -31.91014 -31.07430 -30.56777 -28.09893 -26.36026 -25.17863 -24.50591 -23.62714 -22.91824 -21.38177 -20.58663 -19.84949 -19.59125 -18.10207 -17.23937 -16.80421 -16.42301 -16.24267 -16.00185 -15.78493 -15.61244 -15.23643 -15.02582 -14.75283 -14.52453 -14.30870 -14.26950 -13.84003 -13.59814 -13.46022 -13.05732 -12.85319 -12.74022 -12.66242 -12.48829 -12.09976 -11.97605 -11.80503 -11.50731 -11.49460 -11.24825 -11.11001 -11.04563 -10.76862 -10.67621 -10.33647 -10.19206 -10.17048 -10.05413 -9.91654 -9.40384 -9.17861 -9.16552 -9.00788 -8.43862 -6.08646 -4.14375 2.05346 2.23570 2.50659 2.75039 3.26118 3.30632 3.37690 3.44881 3.75610 3.86982 4.17879 4.32389 4.36738 4.43344 4.52258 4.56015 4.68072 4.73328 4.75794 4.92012 4.97281 5.19357 5.20589 5.24121 5.25665 5.27974 5.29278 5.30047 5.36245 5.44314 5.53089 5.55806 5.77842 5.79263 5.95987 6.01306 6.11494 6.71126 6.82413 6.91087 6.91701 7.13522 7.27493 7.46469 7.61560 7.76812 7.96116 8.06250 8.15588 8.80266 8.94552 9.51009 10.98682 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.001856 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.108638 B =15083.834265 C =15277.172090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 H 0.113 0.887 4 N -0.718 5.718 5 C 0.522 3.478 6 O -0.513 6.513 7 C 0.045 3.955 8 O -0.342 6.342 9 C 0.466 3.534 10 O -0.516 6.516 11 C 0.059 3.941 12 H 0.066 0.934 13 C -0.134 4.134 14 C -0.512 4.512 15 H 0.077 0.923 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.517 3.483 23 O -0.535 6.535 24 N -0.608 5.608 25 C 0.099 3.901 26 C -0.138 4.138 27 C -0.121 4.121 28 C -0.136 4.136 29 C 0.110 3.890 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.026 0.974 37 H 0.031 0.969 38 H 0.096 0.904 39 H 0.263 0.737 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 -0.172 -30.647 31.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 H 0.131 0.869 4 N -0.376 5.376 5 C 0.308 3.692 6 O -0.386 6.386 7 C -0.033 4.033 8 O -0.259 6.259 9 C 0.311 3.689 10 O -0.403 6.403 11 C 0.040 3.960 12 H 0.084 0.916 13 C -0.192 4.192 14 C -0.550 4.550 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.209 1.209 22 C 0.304 3.696 23 O -0.411 6.411 24 N -0.342 5.342 25 C -0.023 4.023 26 C -0.176 4.176 27 C -0.158 4.158 28 C -0.174 4.174 29 C -0.012 4.012 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.249 0.751 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.617 -0.141 -30.395 30.910 hybrid contribution 0.478 -1.005 0.552 1.242 sum -5.139 -1.146 -29.843 30.304 Atomic orbital electron populations 1.22137 0.92320 1.03448 1.03904 1.20756 0.96060 0.98007 0.83260 0.86899 1.45652 1.68781 1.15017 1.08140 1.20316 0.77615 0.87393 0.83864 1.90737 1.47937 1.15466 1.84473 1.22399 1.03273 0.92445 0.85159 1.86728 1.79022 1.41623 1.18507 1.25558 0.71091 0.89378 0.82857 1.90504 1.45762 1.19765 1.84275 1.18796 0.97373 0.93887 0.85902 0.91595 1.21739 0.95018 1.00460 1.01986 1.21173 1.43757 0.97503 0.92585 0.90537 1.24948 0.95210 0.95040 0.98878 1.69896 1.48211 1.09639 1.25182 0.86315 0.78374 0.80247 0.81828 1.19517 1.20914 1.20907 1.20636 0.77742 0.86660 0.84550 1.90699 1.46450 1.18650 1.85292 1.48031 1.67081 1.12285 1.06796 1.22036 0.97791 0.80093 1.02412 1.22014 0.99309 0.99376 0.96872 1.21524 1.01600 0.95728 0.96969 1.21921 0.98689 0.95941 1.00838 1.21641 0.97809 0.96895 0.84829 0.91524 0.90124 0.91010 0.75122 0.88586 0.88562 0.95470 0.95009 0.88519 0.92732 0.90659 0.89065 0.91153 0.90244 0.91463 0.91639 0.91355 0.90571 0.88806 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.30 37.16 0.35 -0.95 16 2 C 0.13 1.24 2.13 -69.08 -0.15 1.09 16 3 H 0.11 1.11 5.91 -51.93 -0.31 0.80 16 4 N -0.72 -8.25 5.03 -54.93 -0.28 -8.53 16 5 C 0.52 7.73 7.87 -10.98 -0.09 7.64 16 6 O -0.51 -9.25 16.16 -14.10 -0.23 -9.48 16 7 C 0.05 0.72 5.94 36.01 0.21 0.94 16 8 O -0.34 -7.17 9.66 -45.91 -0.44 -7.62 16 9 C 0.47 11.14 7.25 36.01 0.26 11.40 16 10 O -0.52 -13.01 15.21 -18.75 -0.29 -13.30 16 11 C 0.06 1.54 2.74 -92.92 -0.25 1.29 16 12 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 13 C -0.13 -3.27 8.90 37.16 0.33 -2.94 16 14 C -0.51 -14.48 8.37 -34.44 -0.29 -14.77 16 15 H 0.08 2.24 6.76 -52.49 -0.35 1.89 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 18 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.52 5.11 6.96 -10.99 -0.08 5.03 16 23 O -0.53 -6.86 15.31 5.55 0.09 -6.78 16 24 N -0.61 -4.43 2.97 -172.50 -0.51 -4.95 16 25 C 0.10 0.50 5.57 -3.48 -0.02 0.48 16 26 C -0.14 -0.63 6.10 -26.38 -0.16 -0.79 16 27 C -0.12 -0.50 5.88 -26.69 -0.16 -0.65 16 28 C -0.14 -0.69 6.08 -26.61 -0.16 -0.85 16 29 C 0.11 0.70 6.44 -3.71 -0.02 0.67 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.42 7.20 -51.93 -0.37 0.04 16 33 H 0.41 4.33 7.72 -40.82 -0.32 4.01 16 34 H 0.10 1.40 8.13 -51.93 -0.42 0.98 16 35 H 0.10 1.39 8.13 -51.93 -0.42 0.96 16 36 H 0.03 0.60 8.11 -51.92 -0.42 0.17 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.46 5.29 -51.93 -0.27 0.18 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.09 0.75 7.00 -51.93 -0.36 0.39 16 49 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -34.20 397.69 -8.16 -42.36 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.78 Total: 0.96 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -0.32 Total: 9.17 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.16 Total: -37.89 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -0.87 Total: -37.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.20 -8.16 -42.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649877775.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.175 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds