Wall clock time and date at job start Tue Mar 31 2020 23:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47181 * 2 1 4 4 N 1.46503 * 109.47420 * 120.00212 * 2 1 3 5 5 C 1.34777 * 119.99658 * 274.99728 * 4 2 1 6 6 O 1.21276 * 120.00225 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99719 * 180.02562 * 5 4 2 8 8 O 1.45199 * 109.46897 * 180.02562 * 7 5 4 9 9 C 1.34233 * 116.99805 * 179.97438 * 8 7 5 10 10 O 1.20822 * 119.99815 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99716 * 179.97438 * 9 8 7 12 12 H 1.08996 * 109.47442 * 300.00384 * 11 9 8 13 13 C 1.53000 * 109.47005 * 60.00758 * 11 9 8 14 14 C 1.50705 * 109.46651 * 180.02562 * 11 9 8 15 15 H 1.08000 * 120.00335 * 0.02562 * 14 11 9 16 16 C 1.37877 * 119.99589 * 180.02562 * 14 11 9 17 17 N 1.31510 * 120.00309 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99859 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47151 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47065 * 120.00080 * 18 16 14 21 21 H 1.48493 * 109.47211 * 240.00190 * 18 16 14 22 22 C 1.50707 * 109.46902 * 240.00141 * 2 1 3 23 23 O 1.21283 * 119.99889 * 257.22044 * 22 2 1 24 24 N 1.34770 * 119.99897 * 77.22683 * 22 2 1 25 25 C 1.46926 * 120.63412 * 5.03092 * 24 22 2 26 26 C 1.53626 * 108.54573 * 126.36904 * 25 24 22 27 27 C 1.53046 * 109.23881 * 54.85789 * 26 25 24 28 28 C 1.53036 * 109.53894 * 298.51164 * 27 26 25 29 29 C 1.46934 * 120.63041 * 185.31419 * 24 22 2 30 30 H 1.08994 * 109.46870 * 178.85541 * 1 2 3 31 31 H 1.09002 * 109.46449 * 298.84859 * 1 2 3 32 32 H 1.08995 * 109.47094 * 58.85395 * 1 2 3 33 33 H 0.96994 * 120.00210 * 95.00024 * 4 2 1 34 34 H 1.08993 * 109.46920 * 60.00211 * 7 5 4 35 35 H 1.09004 * 109.46845 * 299.99755 * 7 5 4 36 36 H 1.09008 * 109.46884 * 299.99605 * 13 11 9 37 37 H 1.08996 * 109.47325 * 59.99555 * 13 11 9 38 38 H 1.08996 * 109.47078 * 179.97438 * 13 11 9 39 39 H 0.97005 * 120.00134 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.58829 * 246.20635 * 25 24 22 41 41 H 1.08999 * 109.58640 * 6.62900 * 25 24 22 42 42 H 1.08999 * 109.63322 * 294.87048 * 26 25 24 43 43 H 1.08996 * 109.42879 * 174.72517 * 26 25 24 44 44 H 1.08997 * 109.45980 * 178.48993 * 27 26 25 45 45 H 1.08996 * 109.45957 * 58.53343 * 27 26 25 46 46 H 1.09001 * 109.49967 * 301.41705 * 28 27 26 47 47 H 1.08993 * 109.50024 * 181.31797 * 28 27 26 48 48 H 1.08995 * 109.58159 * 353.36868 * 29 24 22 49 49 H 1.08995 * 109.58594 * 113.79373 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6502 -0.7286 3.5874 8 8 2.6984 0.2043 4.6990 9 6 3.1275 -0.2739 5.8776 10 8 3.4524 -1.4334 5.9769 11 6 3.2049 0.6358 7.0766 12 1 3.8850 1.4605 6.8637 13 6 1.8130 1.1897 7.3873 14 6 3.7136 -0.1405 8.2640 15 1 3.9569 -1.1877 8.1606 16 6 3.8684 0.4862 9.4823 17 7 3.5718 1.7612 9.6083 18 14 4.4983 -0.4761 10.9543 19 1 4.7556 -1.8825 10.5529 20 1 5.7584 0.1377 11.4445 21 1 3.4809 -0.4488 12.0356 22 6 2.0323 -0.7104 -1.2305 23 8 2.4535 -1.8447 -1.1465 24 7 2.0136 -0.0853 -2.4243 25 6 1.6104 1.3240 -2.5252 26 6 2.7173 2.0977 -3.2574 27 6 2.9959 1.4261 -4.6041 28 6 3.4830 -0.0058 -4.3709 29 6 2.3901 -0.8018 -3.6506 30 1 -0.3633 -1.0274 -0.0205 31 1 -0.3632 0.4959 0.9002 32 1 -0.3633 0.5315 -0.8795 33 1 2.2491 -1.6317 1.1526 34 1 3.6494 -1.1203 3.3977 35 1 1.9779 -1.5509 3.8325 36 1 1.4454 1.7513 6.5283 37 1 1.1329 0.3650 7.6002 38 1 1.8689 1.8473 8.2547 39 1 3.6810 2.2022 10.4654 40 1 0.6778 1.3981 -3.0844 41 1 1.4735 1.7373 -1.5260 42 1 3.6257 2.0954 -2.6550 43 1 2.3928 3.1249 -3.4234 44 1 3.7620 1.9878 -5.1385 45 1 2.0810 1.4065 -5.1963 46 1 4.3841 0.0117 -3.7580 47 1 3.7035 -0.4758 -5.3293 48 1 2.7678 -1.7915 -3.3940 49 1 1.5198 -0.8975 -4.2997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649877775.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:03 Heat of formation + Delta-G solvation = -186.734530 kcal Electronic energy + Delta-G solvation = -29720.327929 eV Core-core repulsion = 25453.435159 eV Total energy + Delta-G solvation = -4266.892770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.91877 -41.44733 -40.39221 -38.50548 -37.44990 -36.20984 -35.93338 -34.16663 -32.81353 -32.47544 -31.67943 -29.36419 -27.28303 -26.94665 -25.31999 -24.75976 -24.01952 -22.16546 -21.64830 -21.49406 -20.27260 -19.05361 -18.70345 -18.10691 -18.01970 -17.72614 -17.26657 -17.13007 -16.66005 -16.35763 -16.04690 -15.89942 -15.44750 -15.11316 -14.93501 -14.90377 -14.73211 -14.37716 -14.35632 -14.05404 -13.79846 -13.62049 -13.42448 -13.37683 -13.20893 -12.98188 -12.77694 -12.75365 -12.61024 -12.30402 -12.23723 -12.05889 -11.89846 -11.81769 -11.67707 -11.51781 -11.27822 -11.10313 -11.04204 -10.91987 -10.53865 -10.41182 -9.75776 -8.19525 -6.33321 1.12246 1.28711 1.36869 1.39293 1.43008 1.44420 1.57841 1.84737 2.33692 2.48987 3.10434 3.19122 3.47960 3.77057 3.88054 3.91515 3.97192 3.99775 4.01125 4.04577 4.09649 4.22880 4.33843 4.46130 4.54450 4.59542 4.68005 4.68410 4.80391 4.88254 4.89465 4.90003 4.98620 5.00960 5.09469 5.12662 5.15653 5.23104 5.29449 5.42047 5.42822 5.47832 5.68104 5.87289 6.08388 6.18194 6.21514 6.73454 6.87697 6.92979 6.98113 7.35510 8.87313 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.001856 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.108638 B =15083.834265 C =15277.172090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.114 0.886 4 N -0.704 5.704 5 C 0.531 3.469 6 O -0.548 6.548 7 C 0.037 3.963 8 O -0.348 6.348 9 C 0.476 3.524 10 O -0.534 6.534 11 C 0.050 3.950 12 H 0.050 0.950 13 C -0.121 4.121 14 C -0.536 4.536 15 H 0.060 0.940 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 0.967 3.033 19 H -0.274 1.274 20 H -0.274 1.274 21 H -0.273 1.273 22 C 0.516 3.484 23 O -0.571 6.571 24 N -0.601 5.601 25 C 0.093 3.907 26 C -0.137 4.137 27 C -0.118 4.118 28 C -0.132 4.132 29 C 0.107 3.893 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.418 0.582 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.043 0.957 37 H 0.032 0.968 38 H 0.079 0.921 39 H 0.268 0.732 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.048 0.952 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 -0.054 -32.250 32.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.017 3.983 3 H 0.132 0.868 4 N -0.360 5.360 5 C 0.317 3.683 6 O -0.425 6.425 7 C -0.040 4.040 8 O -0.264 6.264 9 C 0.321 3.679 10 O -0.423 6.423 11 C 0.031 3.969 12 H 0.068 0.932 13 C -0.179 4.179 14 C -0.574 4.574 15 H 0.078 0.922 16 C -0.180 4.180 17 N -0.548 5.548 18 Si 0.792 3.208 19 H -0.199 1.199 20 H -0.200 1.200 21 H -0.198 1.198 22 C 0.303 3.697 23 O -0.451 6.451 24 N -0.334 5.334 25 C -0.028 4.028 26 C -0.175 4.175 27 C -0.155 4.155 28 C -0.170 4.170 29 C -0.015 4.015 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.256 0.744 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.109 0.891 48 H 0.091 0.909 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.455 -0.004 -32.068 32.711 hybrid contribution 0.729 -1.018 0.878 1.529 sum -5.726 -1.022 -31.190 31.728 Atomic orbital electron populations 1.22095 0.90738 1.03750 1.04526 1.20947 0.97250 0.97709 0.82391 0.86814 1.45543 1.67480 1.15210 1.07801 1.20025 0.77298 0.86776 0.84209 1.90727 1.49943 1.16798 1.85035 1.22788 1.04968 0.92244 0.84042 1.86637 1.78232 1.42795 1.18746 1.24927 0.70988 0.88546 0.83406 1.90484 1.46682 1.20266 1.84846 1.18710 0.97707 0.93721 0.86732 0.93213 1.21563 0.94269 1.00155 1.01873 1.21280 1.45044 0.97048 0.94055 0.92168 1.25692 0.95106 0.95988 1.01226 1.69980 1.48163 1.10607 1.26067 0.85362 0.78233 0.78591 0.78607 1.19907 1.19979 1.19838 1.20609 0.77635 0.86226 0.85230 1.90685 1.48383 1.20150 1.85860 1.48141 1.65772 1.13176 1.06281 1.22282 0.99008 0.78542 1.03005 1.22022 0.98372 1.00344 0.96787 1.21526 1.02415 0.94738 0.96849 1.21898 0.97398 0.96792 1.00945 1.21760 0.99026 0.96031 0.84645 0.91449 0.91503 0.88256 0.74397 0.87052 0.86658 0.93753 0.94904 0.90268 0.92246 0.88143 0.89109 0.92993 0.88576 0.90997 0.90129 0.93328 0.89114 0.90888 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.30 71.98 0.67 -1.57 16 2 C 0.12 2.31 2.13 44.25 0.09 2.40 16 3 H 0.11 2.13 5.91 -2.39 -0.01 2.12 16 4 N -0.70 -15.71 5.03 -446.08 -2.25 -17.96 16 5 C 0.53 15.44 7.87 87.66 0.69 16.13 16 6 O -0.55 -19.67 16.16 15.78 0.26 -19.42 16 7 C 0.04 1.15 5.94 71.24 0.42 1.57 16 8 O -0.35 -14.55 9.66 -45.09 -0.44 -14.99 16 9 C 0.48 22.88 7.25 71.24 0.52 23.40 16 10 O -0.53 -27.03 15.21 21.98 0.33 -26.70 16 11 C 0.05 2.66 2.74 -12.28 -0.03 2.62 16 12 H 0.05 2.76 8.14 -2.39 -0.02 2.74 16 13 C -0.12 -5.92 8.90 71.98 0.64 -5.28 16 14 C -0.54 -30.75 8.37 25.60 0.21 -30.53 16 15 H 0.06 3.59 6.76 -2.91 -0.02 3.57 16 16 C 0.02 1.09 5.30 84.66 0.45 1.54 16 17 N -0.91 -51.24 11.32 21.45 0.24 -51.00 16 18 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.52 9.80 6.96 87.66 0.61 10.41 16 23 O -0.57 -14.62 15.31 -3.04 -0.05 -14.67 16 24 N -0.60 -7.92 2.97 -818.06 -2.43 -10.34 16 25 C 0.09 0.72 5.57 86.51 0.48 1.20 16 26 C -0.14 -0.99 6.10 30.82 0.19 -0.80 16 27 C -0.12 -0.70 5.88 30.62 0.18 -0.52 16 28 C -0.13 -1.15 6.08 30.67 0.19 -0.97 16 29 C 0.11 1.21 6.44 86.36 0.56 1.77 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 0.89 7.20 -2.39 -0.02 0.88 16 33 H 0.42 8.51 7.72 -92.71 -0.72 7.79 16 34 H 0.11 3.16 8.13 -2.39 -0.02 3.14 16 35 H 0.12 3.19 8.13 -2.38 -0.02 3.17 16 36 H 0.04 1.96 8.11 -2.38 -0.02 1.94 16 37 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 4.17 6.07 -2.39 -0.01 4.15 16 39 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 40 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.09 0.73 5.29 -2.39 -0.01 0.72 16 42 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.07 1.16 7.00 -2.39 -0.02 1.14 16 49 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -73.77 397.69 3.82 -69.95 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.25 Total: 17.54 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: 5.87 Total: 21.38 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -4.43 Total: -79.29 kcal Atomic # 8 Polarization: -75.88 SS G_CDS: 0.11 Total: -75.77 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -73.77 3.82 -69.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649877775.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.783 kcal (2) G-P(sol) polarization free energy of solvation -73.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds