Wall clock time and date at job start Tue Mar 31 2020 23:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47171 * 2 1 4 4 C 1.52992 * 109.47088 * 120.00346 * 2 1 3 5 5 H 1.09007 * 109.47452 * 184.99715 * 4 2 1 6 6 C 1.53000 * 109.47416 * 304.99524 * 4 2 1 7 7 N 1.46496 * 109.47460 * 175.00015 * 6 4 2 8 8 C 1.34780 * 120.00146 * 180.02562 * 7 6 4 9 9 O 1.21279 * 119.99863 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99965 * 180.02562 * 8 7 6 11 11 H 1.08996 * 109.47463 * 59.99457 * 10 8 7 12 12 C 1.53003 * 109.46885 * 299.98904 * 10 8 7 13 13 C 1.50698 * 109.46987 * 179.97438 * 10 8 7 14 14 C 1.38415 * 120.02708 * 239.99605 * 13 10 8 15 15 F 1.35099 * 120.00946 * 359.97438 * 14 13 10 16 16 C 1.38474 * 119.97981 * 179.97438 * 14 13 10 17 17 C 1.38210 * 120.02023 * 0.28104 * 16 14 13 18 18 C 1.38201 * 120.05118 * 359.44081 * 17 16 14 19 19 C 1.38420 * 120.02535 * 59.97112 * 13 10 8 20 20 F 1.35097 * 120.01373 * 0.02562 * 19 13 10 21 21 N 1.46500 * 109.47198 * 64.99843 * 4 2 1 22 22 C 1.36936 * 119.99970 * 85.00228 * 21 4 2 23 23 H 1.07999 * 120.00130 * 359.97438 * 22 21 4 24 24 C 1.38814 * 120.00019 * 179.97438 * 22 21 4 25 25 N 1.31617 * 119.99882 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00033 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47373 * 90.00097 * 26 24 22 28 28 H 1.48501 * 109.47231 * 210.00310 * 26 24 22 29 29 H 1.48503 * 109.47353 * 329.99989 * 26 24 22 30 30 H 1.09004 * 109.46717 * 299.99920 * 1 2 3 31 31 H 1.08999 * 109.47130 * 59.99605 * 1 2 3 32 32 H 1.08997 * 109.47089 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46741 * 240.00636 * 2 1 3 34 34 H 1.08999 * 109.47281 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47416 * 300.00220 * 3 2 1 36 36 H 1.09004 * 109.47235 * 60.00397 * 3 2 1 37 37 H 1.09004 * 109.47002 * 55.00295 * 6 4 2 38 38 H 1.09000 * 109.47400 * 295.00340 * 6 4 2 39 39 H 0.96998 * 119.99759 * 0.02562 * 7 6 4 40 40 H 1.08996 * 109.47066 * 300.00794 * 12 10 8 41 41 H 1.09001 * 109.46438 * 60.00315 * 12 10 8 42 42 H 1.08994 * 109.47149 * 179.97438 * 12 10 8 43 43 H 1.08002 * 119.98641 * 179.97438 * 16 14 13 44 44 H 1.08000 * 119.96986 * 179.70463 * 17 16 14 45 45 H 1.08002 * 119.98829 * 180.25980 * 18 17 16 46 46 H 0.97000 * 119.99725 * 264.99795 * 21 4 2 47 47 H 0.97003 * 119.99982 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1264 -0.6444 1.2951 6 6 1.4301 -0.0763 2.4953 7 7 1.8228 -0.8398 3.6823 8 6 1.3989 -0.4543 4.9022 9 8 0.6926 0.5249 5.0173 10 6 1.8034 -1.2394 6.1233 11 1 2.8899 -1.2414 6.2106 12 6 1.2993 -2.6783 5.9946 13 6 1.2025 -0.6042 7.3507 14 6 2.0244 -0.1363 8.3614 15 9 3.3659 -0.2495 8.2483 16 6 1.4712 0.4477 9.4885 17 6 0.0987 0.5583 9.6071 18 6 -0.7228 0.0968 8.5961 19 6 -0.1718 -0.4876 7.4680 20 9 -0.9752 -0.9438 6.4823 21 7 1.6524 -2.1329 1.1904 22 6 2.4346 -3.0300 0.5133 23 1 3.3369 -2.6970 0.0222 24 6 2.0676 -4.3677 0.4581 25 7 0.9676 -4.7735 1.0561 26 14 3.1341 -5.5914 -0.4662 27 1 4.1454 -6.1639 0.4583 28 1 2.2826 -6.6820 -1.0052 29 1 3.8222 -4.9011 -1.5866 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 0.3435 -0.0736 2.4082 38 1 1.7898 0.9485 2.5871 39 1 2.3880 -1.6227 3.5902 40 1 0.2128 -2.6761 5.9073 41 1 1.7342 -3.1374 5.1069 42 1 1.5922 -3.2462 6.8775 43 1 2.1124 0.8124 10.2774 44 1 -0.3321 1.0096 10.4887 45 1 -1.7950 0.1875 8.6879 46 1 0.8418 -2.4319 1.6312 47 1 0.7114 -5.7083 1.0179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667479163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:48 Heat of formation + Delta-G solvation = -120.636558 kcal Electronic energy + Delta-G solvation = -30645.318752 eV Core-core repulsion = 26270.204690 eV Total energy + Delta-G solvation = -4375.114062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.05585 -49.98474 -41.16312 -39.67424 -38.76679 -35.46561 -35.15414 -34.95414 -32.21952 -31.23947 -30.67647 -28.82441 -27.97701 -26.14169 -25.43253 -24.12052 -23.83662 -23.07334 -21.16973 -20.07128 -19.30919 -19.11093 -18.66236 -17.82224 -17.48951 -16.89459 -16.77825 -16.67755 -16.55273 -16.31138 -16.09709 -15.63099 -15.42441 -15.35177 -15.00364 -14.92935 -14.78084 -14.30910 -14.11168 -13.75374 -13.68683 -13.53503 -13.30996 -13.09417 -12.87280 -12.87047 -12.80754 -12.67963 -12.56385 -12.43390 -12.23207 -12.09477 -11.94958 -11.87063 -11.52611 -11.23089 -10.95946 -10.79619 -9.99999 -9.88127 -9.70001 -8.96932 -7.89194 -5.17365 -0.02637 0.03176 1.49597 1.50758 1.57886 1.58389 2.17216 2.49143 2.58694 2.92687 3.25853 3.43045 3.44967 3.58567 3.83615 3.87135 3.89725 3.94867 4.06506 4.19566 4.21822 4.25883 4.33824 4.42861 4.51323 4.62894 4.69954 4.73375 4.83413 4.85807 4.91235 4.93130 5.03550 5.08003 5.08613 5.14939 5.17067 5.21131 5.22084 5.29375 5.46132 5.54861 5.60074 5.66815 5.81182 6.30801 6.54296 7.19129 7.38895 8.10782 8.36346 9.33098 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.003277 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.116523 B = 8541.056453 C = 9517.738067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.172 3.828 5 H 0.055 0.945 6 C 0.121 3.879 7 N -0.709 5.709 8 C 0.515 3.485 9 O -0.573 6.573 10 C -0.067 4.067 11 H 0.122 0.878 12 C -0.140 4.140 13 C -0.157 4.157 14 C 0.117 3.883 15 F -0.136 7.136 16 C -0.159 4.159 17 C -0.049 4.049 18 C -0.169 4.169 19 C 0.129 3.871 20 F -0.142 7.142 21 N -0.725 5.725 22 C -0.231 4.231 23 H 0.075 0.925 24 C -0.066 4.066 25 N -0.963 5.963 26 Si 0.963 3.037 27 H -0.288 1.288 28 H -0.303 1.303 29 H -0.274 1.274 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.409 0.591 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.173 0.827 44 H 0.186 0.814 45 H 0.160 0.840 46 H 0.373 0.627 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.871 12.292 17.163 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.197 4.197 4 C 0.063 3.937 5 H 0.073 0.927 6 C -0.003 4.003 7 N -0.359 5.359 8 C 0.302 3.698 9 O -0.453 6.453 10 C -0.088 4.088 11 H 0.140 0.860 12 C -0.197 4.197 13 C -0.159 4.159 14 C 0.097 3.903 15 F -0.115 7.115 16 C -0.178 4.178 17 C -0.066 4.066 18 C -0.187 4.187 19 C 0.110 3.890 20 F -0.121 7.121 21 N -0.365 5.365 22 C -0.363 4.363 23 H 0.093 0.907 24 C -0.259 4.259 25 N -0.614 5.614 26 Si 0.793 3.207 27 H -0.215 1.215 28 H -0.230 1.230 29 H -0.199 1.199 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.246 0.754 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.190 0.810 44 H 0.203 0.797 45 H 0.178 0.822 46 H 0.205 0.795 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.553 12.886 17.058 21.385 hybrid contribution 0.374 -1.762 -1.230 2.181 sum 0.928 11.124 15.827 19.368 Atomic orbital electron populations 1.21719 0.95796 1.00501 1.01206 1.21615 0.95999 0.96391 0.98853 1.21827 1.01059 0.94740 1.02112 1.20649 0.97216 0.83995 0.91797 0.92692 1.21693 0.99481 0.95099 0.84059 1.45941 1.52435 1.31840 1.05723 1.20667 0.79516 0.84553 0.85079 1.90635 1.38875 1.28864 1.86912 1.20125 1.03082 0.96194 0.89397 0.86034 1.21789 1.01827 0.92265 1.03851 1.19471 0.92946 1.06235 0.97245 1.17408 0.76714 1.00424 0.95712 1.91488 1.29715 1.94058 1.96225 1.21548 0.97230 1.01679 0.97316 1.21318 0.91483 0.95172 0.98640 1.21562 1.03081 1.01229 0.92863 1.17560 0.86998 0.97692 0.86746 1.91480 1.72900 1.86407 1.61285 1.42521 1.28019 1.02711 1.63236 1.19515 1.03384 0.88905 1.24519 0.90670 1.25368 0.98985 0.98872 1.02667 1.69812 1.26239 1.15283 1.50058 0.85300 0.77806 0.79050 0.78510 1.21522 1.23003 1.19884 0.92757 0.92267 0.94952 0.92778 0.92313 0.91909 0.92341 0.92723 0.90435 0.75441 0.92717 0.91417 0.89479 0.81001 0.79670 0.82235 0.79474 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 8.60 71.98 0.62 -3.94 16 2 C -0.11 -3.59 2.88 -10.79 -0.03 -3.62 16 3 C -0.14 -3.63 8.95 71.98 0.64 -2.99 16 4 C 0.17 6.36 2.22 44.99 0.10 6.46 16 5 H 0.06 2.02 8.08 -2.38 -0.02 2.00 16 6 C 0.12 4.20 4.53 86.38 0.39 4.60 16 7 N -0.71 -24.67 5.28 -463.06 -2.45 -27.12 16 8 C 0.52 18.10 6.60 87.66 0.58 18.67 16 9 O -0.57 -23.08 14.56 -3.03 -0.04 -23.12 16 10 C -0.07 -1.95 2.79 -12.29 -0.03 -1.99 16 11 H 0.12 3.18 7.13 -2.39 -0.02 3.16 16 12 C -0.14 -4.02 8.88 71.98 0.64 -3.38 16 13 C -0.16 -4.29 4.41 -19.78 -0.09 -4.38 16 14 C 0.12 2.66 7.25 22.37 0.16 2.82 16 15 F -0.14 -3.21 16.19 44.97 0.73 -2.48 16 16 C -0.16 -2.45 10.03 22.32 0.22 -2.23 16 17 C -0.05 -0.63 10.04 22.25 0.22 -0.41 16 18 C -0.17 -3.22 10.02 22.32 0.22 -2.99 16 19 C 0.13 3.57 6.13 22.37 0.14 3.71 16 20 F -0.14 -4.77 13.81 44.97 0.62 -4.15 16 21 N -0.72 -33.58 4.01 -322.94 -1.30 -34.87 16 22 C -0.23 -11.93 9.93 84.03 0.83 -11.10 16 23 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 24 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 25 N -0.96 -56.54 13.06 21.65 0.28 -56.26 16 26 Si 0.96 44.70 29.55 68.60 2.03 46.73 16 27 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 30 H 0.05 1.74 6.23 -2.38 -0.01 1.73 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.03 1.29 7.75 -2.39 -0.02 1.27 16 33 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.45 6.68 -2.38 -0.02 1.44 16 37 H 0.05 2.08 6.06 -2.38 -0.01 2.06 16 38 H 0.08 2.49 6.81 -2.39 -0.02 2.48 16 39 H 0.41 14.38 7.56 -92.71 -0.70 13.68 16 40 H 0.05 1.74 6.31 -2.39 -0.02 1.73 16 41 H 0.07 2.09 7.56 -2.39 -0.02 2.07 16 42 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 45 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 46 H 0.37 19.21 7.80 -92.71 -0.72 18.49 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -66.73 385.53 4.55 -62.18 By element: Atomic # 1 Polarization: 43.41 SS G_CDS: -0.41 Total: 43.00 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 5.09 Total: -3.91 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -3.46 Total: -118.25 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.04 Total: -23.12 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 1.35 Total: -6.63 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -66.73 4.55 -62.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667479163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.456 kcal (2) G-P(sol) polarization free energy of solvation -66.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds