Wall clock time and date at job start Tue Mar 31 2020 23:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46949 * 2 1 4 4 C 1.52997 * 109.47512 * 120.00006 * 2 1 3 5 5 H 1.08995 * 109.47505 * 300.00457 * 4 2 1 6 6 C 1.53006 * 109.46646 * 59.99998 * 4 2 1 7 7 N 1.46500 * 109.46998 * 175.00104 * 6 4 2 8 8 C 1.34769 * 120.00237 * 180.02562 * 7 6 4 9 9 O 1.21282 * 119.99854 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.00461 * 180.02562 * 8 7 6 11 11 H 1.08996 * 109.47077 * 300.00146 * 10 8 7 12 12 C 1.53001 * 109.46721 * 59.99452 * 10 8 7 13 13 C 1.50696 * 109.47549 * 179.97438 * 10 8 7 14 14 C 1.38422 * 120.02112 * 299.72477 * 13 10 8 15 15 F 1.35093 * 120.01367 * 0.02562 * 14 13 10 16 16 C 1.38483 * 119.96852 * 179.74608 * 14 13 10 17 17 C 1.38202 * 120.02735 * 0.53218 * 16 14 13 18 18 C 1.38207 * 120.04774 * 359.73911 * 17 16 14 19 19 C 1.38411 * 120.02663 * 119.99813 * 13 10 8 20 20 F 1.35106 * 120.01526 * 0.02562 * 19 13 10 21 21 N 1.46497 * 109.47287 * 179.97438 * 4 2 1 22 22 C 1.36946 * 119.99780 * 85.00258 * 21 4 2 23 23 H 1.08004 * 119.99845 * 0.02562 * 22 21 4 24 24 C 1.38809 * 119.99872 * 179.97438 * 22 21 4 25 25 N 1.31614 * 120.00382 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99598 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46448 * 90.00576 * 26 24 22 28 28 H 1.48493 * 109.47133 * 210.00342 * 26 24 22 29 29 H 1.48499 * 109.47382 * 330.00789 * 26 24 22 30 30 H 1.08998 * 109.46865 * 299.99754 * 1 2 3 31 31 H 1.08997 * 109.47108 * 59.99899 * 1 2 3 32 32 H 1.09002 * 109.47044 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47376 * 240.00734 * 2 1 3 34 34 H 1.09006 * 109.47001 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47298 * 299.99985 * 3 2 1 36 36 H 1.08998 * 109.47136 * 60.00412 * 3 2 1 37 37 H 1.08993 * 109.46955 * 295.00330 * 6 4 2 38 38 H 1.09000 * 109.47050 * 55.00158 * 6 4 2 39 39 H 0.97010 * 119.99909 * 359.97438 * 7 6 4 40 40 H 1.09000 * 109.47437 * 60.00827 * 12 10 8 41 41 H 1.09001 * 109.47109 * 180.02562 * 12 10 8 42 42 H 1.08992 * 109.47514 * 300.00223 * 12 10 8 43 43 H 1.07999 * 119.98270 * 180.26962 * 16 14 13 44 44 H 1.08002 * 119.97756 * 179.77349 * 17 16 14 45 45 H 1.08006 * 119.98553 * 179.97438 * 18 17 16 46 46 H 0.96999 * 120.00657 * 265.00290 * 21 4 2 47 47 H 0.96997 * 119.99931 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6768 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 7 2.1142 -2.8883 2.3805 8 6 1.8062 -4.1848 2.5819 9 8 1.0450 -4.7516 1.8268 10 6 2.4066 -4.9300 3.7461 11 1 3.4930 -4.9282 3.6572 12 6 2.0008 -4.2461 5.0532 13 6 1.9045 -6.3508 3.7460 14 6 0.5484 -6.6060 3.8556 15 9 -0.3256 -5.5815 3.9623 16 6 0.0876 -7.9120 3.8502 17 6 0.9820 -8.9604 3.7463 18 6 2.3366 -8.7068 3.6424 19 6 2.7992 -7.4017 3.6419 20 9 4.1236 -7.1542 3.5409 21 7 3.5051 -0.7217 1.2488 22 6 4.1902 0.3530 1.7498 23 1 3.6506 1.2007 2.1455 24 6 5.5783 0.3523 1.7499 25 7 6.2360 -0.6810 1.2682 26 14 6.5129 1.8186 2.4326 27 1 6.7601 1.6162 3.8829 28 1 7.8105 1.9525 1.7232 29 1 5.7109 3.0526 2.2347 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.4438 -2.1650 1.3386 38 1 1.8184 -2.6510 0.3177 39 1 2.7234 -2.4351 2.9843 40 1 0.9145 -4.2479 5.1422 41 1 2.4355 -4.7848 5.8952 42 1 2.3637 -3.2184 5.0535 43 1 -0.9707 -8.1112 3.9313 44 1 0.6221 -9.9787 3.7458 45 1 3.0347 -9.5270 3.5617 46 1 3.9898 -1.4832 0.8938 47 1 7.2060 -0.6812 1.2680 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667479168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:57 Heat of formation + Delta-G solvation = -104.553861 kcal Electronic energy + Delta-G solvation = -30497.284191 eV Core-core repulsion = 26122.867526 eV Total energy + Delta-G solvation = -4374.416664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.10040 -48.99432 -39.89419 -38.65624 -37.23124 -34.32006 -33.80379 -33.12475 -30.47414 -30.42235 -29.69772 -27.89466 -26.11695 -24.90856 -23.79353 -22.98883 -22.51670 -21.45971 -19.95662 -19.20940 -18.22985 -17.73974 -17.25817 -16.64133 -16.20241 -15.81524 -15.63595 -15.48767 -15.31861 -15.18561 -14.73498 -14.48896 -14.09379 -13.94206 -13.78076 -13.38708 -13.37163 -12.88817 -12.81834 -12.68017 -12.38532 -12.21741 -12.09330 -12.02391 -12.00096 -11.62755 -11.55098 -11.06371 -10.99743 -10.94547 -10.81509 -10.63272 -10.30443 -10.10174 -9.95775 -9.57549 -9.51536 -9.00747 -8.91325 -8.85317 -8.58679 -7.03965 -5.82793 -3.12172 0.81280 0.86537 2.94423 3.15588 3.38339 3.44867 3.46287 3.60600 3.80081 4.22538 4.29360 4.52156 4.53210 4.60364 4.95841 5.01827 5.08187 5.22842 5.34324 5.38575 5.53833 5.57256 5.63355 5.63768 5.65130 5.76416 5.78364 5.83104 5.90144 5.94220 5.96937 6.01866 6.09623 6.19121 6.25012 6.38061 6.46014 6.54281 6.62047 6.63351 6.68593 6.94345 7.07543 7.29670 7.65608 7.93559 8.34363 8.56845 9.46404 10.01222 10.37204 11.38928 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.003259 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.580278 B = 8589.227341 C =10050.197118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.115 3.885 7 N -0.707 5.707 8 C 0.519 3.481 9 O -0.546 6.546 10 C -0.075 4.075 11 H 0.115 0.885 12 C -0.146 4.146 13 C -0.134 4.134 14 C 0.163 3.837 15 F -0.122 7.122 16 C -0.170 4.170 17 C -0.064 4.064 18 C -0.170 4.170 19 C 0.136 3.864 20 F -0.128 7.128 21 N -0.721 5.721 22 C -0.237 4.237 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.929 5.929 26 Si 0.902 3.098 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.410 0.590 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.585 -13.519 6.741 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.010 4.010 7 N -0.359 5.359 8 C 0.304 3.696 9 O -0.424 6.424 10 C -0.096 4.096 11 H 0.133 0.867 12 C -0.204 4.204 13 C -0.136 4.136 14 C 0.143 3.857 15 F -0.100 7.100 16 C -0.189 4.189 17 C -0.082 4.082 18 C -0.189 4.189 19 C 0.116 3.884 20 F -0.106 7.106 21 N -0.363 5.363 22 C -0.368 4.368 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.247 0.753 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.159 0.841 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.026 -13.677 6.275 19.263 hybrid contribution 1.233 1.057 0.323 1.656 sum -10.793 -12.620 6.598 17.869 Atomic orbital electron populations 1.21940 0.96873 1.00955 1.00909 1.21727 0.93525 0.97784 1.00057 1.21820 1.04214 0.94621 0.98976 1.20542 0.86374 0.91113 0.95983 0.92881 1.21739 0.97268 0.93176 0.88791 1.45898 1.48476 1.10580 1.30922 1.20134 0.81451 0.82327 0.85717 1.90669 1.36431 1.67875 1.47446 1.20179 1.02986 0.90323 0.96103 0.86670 1.21854 1.02892 1.01131 0.94481 1.19421 0.92375 0.95075 1.06767 1.17074 0.85744 0.84509 0.98329 1.91509 1.67945 1.57919 1.92610 1.21171 1.01537 0.90716 1.05513 1.20793 0.91683 0.99254 0.96495 1.21130 0.97124 0.95016 1.05582 1.17191 0.77583 0.92928 1.00686 1.91539 1.30842 1.95020 1.93183 1.42468 0.98738 1.21237 1.73842 1.19193 0.88764 0.96412 1.32459 0.90929 1.24724 0.96471 0.97678 1.01770 1.69657 1.06928 1.29820 1.51234 0.86276 0.79621 0.82335 0.78463 1.21772 1.21884 1.20757 0.93194 0.93582 0.93057 0.91925 0.89488 0.95011 0.94081 0.91598 0.91983 0.75312 0.91290 0.91345 0.90705 0.84167 0.84093 0.84075 0.78099 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.84 37.16 0.33 -1.80 16 2 C -0.11 -1.87 2.69 -90.62 -0.24 -2.12 16 3 C -0.14 -2.51 8.27 37.16 0.31 -2.20 16 4 C 0.17 3.13 2.18 -67.93 -0.15 2.98 16 5 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 6 C 0.11 1.98 4.73 -4.04 -0.02 1.96 16 7 N -0.71 -11.98 5.28 -60.29 -0.32 -12.30 16 8 C 0.52 8.87 6.60 -10.99 -0.07 8.80 16 9 O -0.55 -10.79 14.58 5.56 0.08 -10.71 16 10 C -0.07 -1.06 2.79 -92.92 -0.26 -1.32 16 11 H 0.12 1.64 7.13 -51.93 -0.37 1.27 16 12 C -0.15 -1.74 8.87 37.16 0.33 -1.41 16 13 C -0.13 -1.84 4.40 -104.49 -0.46 -2.30 16 14 C 0.16 2.14 6.14 -39.42 -0.24 1.90 16 15 F -0.12 -1.77 13.81 2.25 0.03 -1.74 16 16 C -0.17 -1.72 10.03 -39.50 -0.40 -2.12 16 17 C -0.06 -0.54 10.04 -39.61 -0.40 -0.94 16 18 C -0.17 -1.65 10.02 -39.51 -0.40 -2.04 16 19 C 0.14 1.71 7.25 -39.43 -0.29 1.43 16 20 F -0.13 -1.74 16.20 2.25 0.04 -1.70 16 21 N -0.72 -16.26 4.44 -53.42 -0.24 -16.50 16 22 C -0.24 -5.94 7.57 -15.06 -0.11 -6.05 16 23 H 0.07 1.78 7.40 -52.48 -0.39 1.40 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -26.54 13.06 55.49 0.72 -25.81 16 26 Si 0.90 21.35 29.55 -169.99 -5.02 16.32 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.86 6.01 -51.93 -0.31 1.55 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.08 6.71 -51.93 -0.35 0.74 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.41 6.96 7.56 -40.82 -0.31 6.65 16 40 H 0.07 0.84 6.28 -51.93 -0.33 0.51 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.86 7.57 -51.93 -0.39 0.47 16 43 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.38 9.58 7.80 -40.82 -0.32 9.26 16 47 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -29.85 384.70 -7.96 -37.81 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -6.89 Total: 14.41 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.16 Total: -5.58 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.17 Total: -54.61 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.07 Total: -3.44 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.85 -7.96 -37.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667479168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.745 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds