Wall clock time and date at job start Tue Mar 31 2020 23:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46931 * 2 1 4 4 C 1.50695 * 109.47456 * 239.99579 * 2 1 3 5 5 O 1.21287 * 120.00245 * 240.00054 * 4 2 1 6 6 N 1.34776 * 120.00378 * 59.99852 * 4 2 1 7 7 C 1.46500 * 120.00336 * 180.02562 * 6 4 2 8 8 C 1.50703 * 109.46887 * 180.02562 * 7 6 4 9 9 C 1.38234 * 120.00257 * 89.99927 * 8 7 6 10 10 C 1.38238 * 119.99675 * 180.27927 * 9 8 7 11 11 C 1.38229 * 120.00124 * 359.45911 * 10 9 8 12 12 C 1.50699 * 120.00230 * 180.28369 * 11 10 9 13 13 C 1.52992 * 109.47330 * 270.27821 * 12 11 10 14 14 N 1.46499 * 109.47477 * 179.97438 * 13 12 11 15 15 C 1.36938 * 120.00167 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00116 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99984 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99942 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47641 * 89.99773 * 19 17 15 21 21 H 1.48505 * 109.47094 * 209.99667 * 19 17 15 22 22 H 1.48505 * 109.47264 * 329.99360 * 19 17 15 23 23 C 1.38234 * 119.99957 * 0.56005 * 11 10 9 24 24 C 1.38234 * 119.99503 * 270.01528 * 8 7 6 25 25 C 1.53000 * 109.47136 * 119.99379 * 2 1 3 26 26 C 1.53007 * 109.47146 * 295.00433 * 25 2 1 27 27 F 1.39899 * 109.47211 * 55.00110 * 25 2 1 28 28 F 1.39899 * 109.47490 * 175.00243 * 25 2 1 29 29 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47314 * 300.00089 * 1 2 3 31 31 H 1.08998 * 109.47079 * 60.00789 * 1 2 3 32 32 H 0.96998 * 119.99558 * 359.97438 * 6 4 2 33 33 H 1.08988 * 109.47441 * 59.99593 * 7 6 4 34 34 H 1.09000 * 109.46440 * 299.99515 * 7 6 4 35 35 H 1.08002 * 119.99744 * 359.97438 * 9 8 7 36 36 H 1.08004 * 119.99577 * 179.72816 * 10 9 8 37 37 H 1.09007 * 109.47085 * 30.27493 * 12 11 10 38 38 H 1.08998 * 109.47270 * 150.26989 * 12 11 10 39 39 H 1.09000 * 109.47063 * 299.99607 * 13 12 11 40 40 H 1.09007 * 109.47367 * 59.99406 * 13 12 11 41 41 H 0.96996 * 119.99819 * 0.02562 * 14 13 12 42 42 H 0.96999 * 120.00169 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.00274 * 179.72697 * 23 11 10 44 44 H 1.07997 * 120.00460 * 0.02562 * 24 8 7 45 45 H 1.08993 * 109.46952 * 59.99639 * 26 25 2 46 46 H 1.08998 * 109.46790 * 180.02562 * 26 25 2 47 47 H 1.09001 * 109.46852 * 299.99450 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7297 -1.6966 -1.1190 6 7 1.7069 -0.2502 -2.4545 7 6 2.1948 -0.9412 -3.6506 8 6 1.6931 -0.2304 -4.8811 9 6 2.4409 0.7860 -5.4455 10 6 1.9778 1.4418 -6.5709 11 6 0.7724 1.0736 -7.1384 12 6 0.2706 1.7842 -8.3689 13 6 -0.5782 2.9872 -7.9528 14 7 -1.0655 3.6783 -9.1490 15 6 -1.8521 4.7922 -9.0235 16 1 -2.1129 5.1615 -8.0427 17 6 -2.3143 5.4468 -10.1571 18 7 -1.9961 4.9972 -11.3524 19 14 -3.3866 6.9667 -9.9859 20 1 -2.5270 8.1766 -9.9408 21 1 -4.3070 7.0565 -11.1479 22 1 -4.1787 6.8752 -8.7331 23 6 0.0244 0.0574 -6.5738 24 6 0.4849 -0.5948 -5.4453 25 6 2.0400 -0.7211 1.2493 26 6 1.6351 0.0692 2.4954 27 9 1.4822 -2.0027 1.3084 28 9 3.4343 -0.8215 1.1934 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.1489 0.5382 -2.5436 33 1 1.8313 -1.9687 -3.6504 34 1 3.2848 -0.9414 -3.6507 35 1 3.3846 1.0711 -5.0042 36 1 2.5600 2.2389 -7.0092 37 1 1.1187 2.1260 -8.9624 38 1 -0.3355 1.0996 -8.9621 39 1 -1.4263 2.6455 -7.3594 40 1 0.0280 3.6719 -7.3595 41 1 -0.8316 3.3465 -10.0299 42 1 -2.3187 5.4548 -12.1445 43 1 -0.9196 -0.2273 -7.0146 44 1 -0.0997 -1.3885 -5.0041 45 1 0.5489 0.1474 2.5389 46 1 1.9989 -0.4444 3.3853 47 1 2.0698 1.0677 2.4494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690798751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:32 Heat of formation + Delta-G solvation = -118.526149 kcal Electronic energy + Delta-G solvation = -28400.308853 eV Core-core repulsion = 24025.286305 eV Total energy + Delta-G solvation = -4375.022548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.20731 -47.17891 -40.30475 -39.37693 -35.89863 -35.24909 -34.77235 -32.81354 -31.05299 -30.98148 -30.26829 -28.46065 -26.24094 -25.45199 -23.56858 -22.77185 -22.29739 -21.58947 -20.63730 -20.42400 -18.18409 -17.88837 -17.23566 -17.17141 -16.27920 -16.03818 -15.98401 -15.54780 -15.28567 -14.97683 -14.66988 -14.32763 -14.08845 -13.75095 -13.66251 -13.55312 -13.46973 -13.39213 -13.32448 -13.19700 -13.18015 -12.81008 -12.63842 -12.58944 -12.38574 -12.32794 -12.16392 -11.29109 -11.26202 -11.21711 -11.08045 -10.91821 -10.75610 -10.63230 -10.22432 -10.09375 -9.75162 -9.44298 -8.97600 -8.89244 -8.60400 -6.96153 -5.79588 -3.08760 1.14526 1.36867 2.21938 2.72225 3.25333 3.41181 3.46041 3.48011 3.59441 3.72847 3.91408 3.99754 4.37240 4.45163 4.52327 4.56105 4.58057 4.72197 4.91126 4.93790 5.00288 5.03566 5.08906 5.10471 5.16961 5.32311 5.40114 5.46314 5.49828 5.54784 5.57833 5.73499 5.82743 5.87564 6.01074 6.04627 6.16560 6.24508 6.41607 6.45664 6.57435 6.76874 6.89377 6.95817 7.07775 7.66658 7.79917 8.39142 9.50198 10.07543 10.42341 11.43254 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.001752 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.891050 B =15977.901402 C =17056.066621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.158 4.158 3 H 0.126 0.874 4 C 0.516 3.484 5 O -0.523 6.523 6 N -0.721 5.721 7 C 0.166 3.834 8 C -0.128 4.128 9 C -0.098 4.098 10 C -0.118 4.118 11 C -0.051 4.051 12 C -0.095 4.095 13 C 0.162 3.838 14 N -0.734 5.734 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.118 4.118 24 C -0.098 4.098 25 C 0.309 3.691 26 C -0.197 4.197 27 F -0.192 7.192 28 F -0.191 7.191 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.404 0.596 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.075 -12.059 25.384 29.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 H 0.144 0.856 4 C 0.301 3.699 5 O -0.398 6.398 6 N -0.373 5.373 7 C 0.043 3.957 8 C -0.129 4.129 9 C -0.117 4.117 10 C -0.136 4.136 11 C -0.052 4.052 12 C -0.133 4.133 13 C 0.034 3.966 14 N -0.379 5.379 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C -0.136 4.136 24 C -0.117 4.117 25 C 0.272 3.728 26 C -0.255 4.255 27 F -0.173 7.173 28 F -0.172 7.172 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.238 0.762 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.143 0.857 44 H 0.138 0.862 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.513 -12.698 25.528 29.756 hybrid contribution -0.690 1.096 -0.430 1.365 sum 7.823 -11.602 25.098 28.735 Atomic orbital electron populations 1.21855 0.90297 1.04324 1.04169 1.22492 1.00315 1.02501 0.92693 0.85629 1.20161 0.80562 0.84807 0.84396 1.90798 1.36905 1.25573 1.86495 1.46051 1.53884 1.32343 1.05035 1.20167 0.99263 0.95444 0.80783 1.19693 0.96422 0.99068 0.97681 1.21016 0.99391 0.95318 0.95972 1.21126 0.96309 0.99958 0.96200 1.20089 0.93848 0.94726 0.96504 1.20882 1.00551 0.97837 0.94029 1.20575 0.94378 0.90759 0.90862 1.42373 1.60775 1.31675 1.03039 1.19224 1.22731 1.02557 0.92651 0.91190 1.24760 1.01363 0.99701 0.95235 1.69658 1.49907 1.41910 0.96701 0.86171 0.80010 0.83029 0.76867 1.21687 1.21729 1.20757 1.21128 0.99974 0.96319 0.96177 1.21013 0.95214 0.99521 0.95939 1.20626 0.75359 0.80667 0.96141 1.22852 1.04700 1.01680 0.96227 1.93024 1.84905 1.42064 1.97341 1.93052 1.30288 1.96429 1.97407 0.90793 0.90333 0.90445 0.76159 0.90634 0.90637 0.86167 0.85682 0.90749 0.90747 0.96303 0.96307 0.78258 0.93478 0.85683 0.86166 0.88875 0.89613 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 8.68 37.16 0.32 -0.35 16 2 C -0.16 -1.03 2.41 -91.77 -0.22 -1.25 16 3 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 4 C 0.52 5.12 6.93 -10.99 -0.08 5.05 16 5 O -0.52 -7.49 14.82 5.55 0.08 -7.41 16 6 N -0.72 -5.88 5.44 -61.48 -0.33 -6.21 16 7 C 0.17 1.52 5.80 -5.19 -0.03 1.49 16 8 C -0.13 -1.25 5.25 -104.62 -0.55 -1.80 16 9 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 10 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 11 C -0.05 -0.67 5.13 -104.63 -0.54 -1.21 16 12 C -0.10 -1.50 5.46 -27.89 -0.15 -1.65 16 13 C 0.16 3.20 6.24 -4.05 -0.03 3.18 16 14 N -0.73 -18.54 5.60 -59.91 -0.34 -18.87 16 15 C -0.24 -6.72 9.99 -15.06 -0.15 -6.88 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 19 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 24 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 25 C 0.31 2.56 1.50 -26.73 -0.04 2.52 16 26 C -0.20 -0.84 9.14 37.16 0.34 -0.50 16 27 F -0.19 -2.09 15.75 2.25 0.04 -2.06 16 28 F -0.19 -2.17 15.82 2.25 0.04 -2.14 16 29 H 0.07 0.43 7.68 -51.93 -0.40 0.04 16 30 H 0.08 0.20 6.56 -51.93 -0.34 -0.14 16 31 H 0.08 0.28 7.56 -51.93 -0.39 -0.12 16 32 H 0.40 2.52 7.88 -40.82 -0.32 2.20 16 33 H 0.08 0.72 8.09 -51.94 -0.42 0.30 16 34 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 38 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.09 0.24 6.56 -51.93 -0.34 -0.10 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -34.82 397.55 -8.72 -43.53 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.14 Total: 5.61 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.75 Total: -8.28 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.05 Total: -52.45 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.08 Total: -7.41 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.07 Total: -4.19 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.82 -8.72 -43.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690798751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.994 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds