Wall clock time and date at job start Tue Mar 31 2020 23:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46931 * 2 1 4 4 C 1.50695 * 109.47456 * 239.99579 * 2 1 3 5 5 O 1.21287 * 120.00245 * 240.00054 * 4 2 1 6 6 N 1.34776 * 120.00378 * 59.99852 * 4 2 1 7 7 C 1.46500 * 120.00336 * 180.02562 * 6 4 2 8 8 C 1.50703 * 109.46887 * 180.02562 * 7 6 4 9 9 C 1.38234 * 120.00257 * 89.99927 * 8 7 6 10 10 C 1.38238 * 119.99675 * 180.27927 * 9 8 7 11 11 C 1.38229 * 120.00124 * 359.45911 * 10 9 8 12 12 C 1.50699 * 120.00230 * 180.28369 * 11 10 9 13 13 C 1.52992 * 109.47330 * 270.27821 * 12 11 10 14 14 N 1.46499 * 109.47477 * 179.97438 * 13 12 11 15 15 C 1.36938 * 120.00167 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00116 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99984 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99942 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47641 * 89.99773 * 19 17 15 21 21 H 1.48505 * 109.47094 * 209.99667 * 19 17 15 22 22 H 1.48505 * 109.47264 * 329.99360 * 19 17 15 23 23 C 1.38234 * 119.99957 * 0.56005 * 11 10 9 24 24 C 1.38234 * 119.99503 * 270.01528 * 8 7 6 25 25 C 1.53000 * 109.47136 * 119.99379 * 2 1 3 26 26 C 1.53007 * 109.47146 * 295.00433 * 25 2 1 27 27 F 1.39899 * 109.47211 * 55.00110 * 25 2 1 28 28 F 1.39899 * 109.47490 * 175.00243 * 25 2 1 29 29 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47314 * 300.00089 * 1 2 3 31 31 H 1.08998 * 109.47079 * 60.00789 * 1 2 3 32 32 H 0.96998 * 119.99558 * 359.97438 * 6 4 2 33 33 H 1.08988 * 109.47441 * 59.99593 * 7 6 4 34 34 H 1.09000 * 109.46440 * 299.99515 * 7 6 4 35 35 H 1.08002 * 119.99744 * 359.97438 * 9 8 7 36 36 H 1.08004 * 119.99577 * 179.72816 * 10 9 8 37 37 H 1.09007 * 109.47085 * 30.27493 * 12 11 10 38 38 H 1.08998 * 109.47270 * 150.26989 * 12 11 10 39 39 H 1.09000 * 109.47063 * 299.99607 * 13 12 11 40 40 H 1.09007 * 109.47367 * 59.99406 * 13 12 11 41 41 H 0.96996 * 119.99819 * 0.02562 * 14 13 12 42 42 H 0.96999 * 120.00169 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.00274 * 179.72697 * 23 11 10 44 44 H 1.07997 * 120.00460 * 0.02562 * 24 8 7 45 45 H 1.08993 * 109.46952 * 59.99639 * 26 25 2 46 46 H 1.08998 * 109.46790 * 180.02562 * 26 25 2 47 47 H 1.09001 * 109.46852 * 299.99450 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7297 -1.6966 -1.1190 6 7 1.7069 -0.2502 -2.4545 7 6 2.1948 -0.9412 -3.6506 8 6 1.6931 -0.2304 -4.8811 9 6 2.4409 0.7860 -5.4455 10 6 1.9778 1.4418 -6.5709 11 6 0.7724 1.0736 -7.1384 12 6 0.2706 1.7842 -8.3689 13 6 -0.5782 2.9872 -7.9528 14 7 -1.0655 3.6783 -9.1490 15 6 -1.8521 4.7922 -9.0235 16 1 -2.1129 5.1615 -8.0427 17 6 -2.3143 5.4468 -10.1571 18 7 -1.9961 4.9972 -11.3524 19 14 -3.3866 6.9667 -9.9859 20 1 -2.5270 8.1766 -9.9408 21 1 -4.3070 7.0565 -11.1479 22 1 -4.1787 6.8752 -8.7331 23 6 0.0244 0.0574 -6.5738 24 6 0.4849 -0.5948 -5.4453 25 6 2.0400 -0.7211 1.2493 26 6 1.6351 0.0692 2.4954 27 9 1.4822 -2.0027 1.3084 28 9 3.4343 -0.8215 1.1934 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.1489 0.5382 -2.5436 33 1 1.8313 -1.9687 -3.6504 34 1 3.2848 -0.9414 -3.6507 35 1 3.3846 1.0711 -5.0042 36 1 2.5600 2.2389 -7.0092 37 1 1.1187 2.1260 -8.9624 38 1 -0.3355 1.0996 -8.9621 39 1 -1.4263 2.6455 -7.3594 40 1 0.0280 3.6719 -7.3595 41 1 -0.8316 3.3465 -10.0299 42 1 -2.3187 5.4548 -12.1445 43 1 -0.9196 -0.2273 -7.0146 44 1 -0.0997 -1.3885 -5.0041 45 1 0.5489 0.1474 2.5389 46 1 1.9989 -0.4444 3.3853 47 1 2.0698 1.0677 2.4494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690798751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:31 Heat of formation + Delta-G solvation = -140.120066 kcal Electronic energy + Delta-G solvation = -28401.245236 eV Core-core repulsion = 24025.286305 eV Total energy + Delta-G solvation = -4375.958931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.89735 -47.90642 -41.09703 -40.26721 -37.22929 -36.07261 -35.77863 -34.25817 -32.55062 -31.85302 -30.88424 -29.68931 -27.15757 -26.29104 -25.15257 -23.64672 -23.28388 -22.76367 -21.60607 -21.17764 -19.21837 -18.84772 -18.53134 -17.87452 -17.07655 -16.89251 -16.79034 -16.68071 -16.33151 -16.10187 -15.79362 -15.40219 -15.16096 -15.06752 -14.86882 -14.77889 -14.32382 -14.29456 -14.04386 -13.83167 -13.75490 -13.56624 -13.53075 -13.46114 -13.00238 -12.97425 -12.89321 -12.86074 -12.64460 -12.48293 -12.36629 -12.11040 -12.03856 -11.81070 -11.78541 -11.70836 -10.98451 -10.94695 -10.20813 -9.83037 -9.56543 -9.02477 -7.96151 -5.25963 0.24561 0.49665 1.47832 1.49085 1.49804 1.58327 2.04318 2.55592 2.71828 2.85114 3.14255 3.37466 3.42715 3.44513 3.60474 3.81551 3.86517 3.91456 4.08621 4.13229 4.15969 4.19915 4.38121 4.46099 4.48579 4.55287 4.59642 4.67532 4.73504 4.74990 4.76237 4.77712 4.79640 5.03951 5.05702 5.11130 5.24235 5.25314 5.26874 5.29719 5.45362 5.49763 5.60759 5.77914 6.05744 6.25967 6.40600 7.10428 7.32070 8.06994 8.30720 9.27255 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.001752 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.891050 B =15977.901402 C =17056.066621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.152 4.152 3 H 0.157 0.843 4 C 0.510 3.490 5 O -0.574 6.574 6 N -0.709 5.709 7 C 0.169 3.831 8 C -0.115 4.115 9 C -0.095 4.095 10 C -0.125 4.125 11 C -0.069 4.069 12 C -0.081 4.081 13 C 0.163 3.837 14 N -0.748 5.748 15 C -0.248 4.248 16 H 0.076 0.924 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.976 3.024 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.268 1.268 23 C -0.124 4.124 24 C -0.095 4.095 25 C 0.289 3.711 26 C -0.190 4.190 27 F -0.214 7.214 28 F -0.215 7.215 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.415 0.585 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.127 0.873 44 H 0.139 0.861 45 H 0.114 0.886 46 H 0.082 0.918 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.485 -11.079 27.451 30.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 H 0.175 0.825 4 C 0.297 3.703 5 O -0.453 6.453 6 N -0.361 5.361 7 C 0.046 3.954 8 C -0.115 4.115 9 C -0.114 4.114 10 C -0.143 4.143 11 C -0.070 4.070 12 C -0.118 4.118 13 C 0.037 3.963 14 N -0.391 5.391 15 C -0.380 4.380 16 H 0.094 0.906 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.805 3.195 20 H -0.213 1.213 21 H -0.221 1.221 22 H -0.193 1.193 23 C -0.143 4.143 24 C -0.113 4.113 25 C 0.252 3.748 26 C -0.247 4.247 27 F -0.195 7.195 28 F -0.196 7.196 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.253 0.747 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.145 0.855 44 H 0.157 0.843 45 H 0.132 0.868 46 H 0.101 0.899 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.911 -11.705 27.631 31.033 hybrid contribution -0.450 0.711 -1.007 1.312 sum 7.461 -10.994 26.624 29.755 Atomic orbital electron populations 1.21910 0.88477 1.03810 1.06172 1.22589 1.01617 1.03148 0.89958 0.82537 1.20817 0.79666 0.84254 0.85592 1.90777 1.39319 1.27945 1.87242 1.45948 1.53418 1.32367 1.04389 1.20069 0.99093 0.95315 0.80875 1.19738 0.95970 0.98391 0.97426 1.21191 1.00009 0.94906 0.95250 1.21210 0.95975 1.00321 0.96756 1.19900 0.95025 0.95878 0.96218 1.20649 0.99612 0.96294 0.95293 1.20692 0.94758 0.91859 0.88999 1.42612 1.60689 1.31585 1.04242 1.19641 1.22357 1.03104 0.92891 0.90607 1.25623 1.03294 1.02997 0.95000 1.69817 1.51465 1.43412 0.97285 0.85102 0.78171 0.79242 0.77016 1.21283 1.22145 1.19279 1.21213 1.00084 0.96224 0.96730 1.21187 0.95415 0.99512 0.95209 1.21379 0.74147 0.80311 0.98917 1.22887 1.06150 1.01829 0.93846 1.92976 1.85084 1.43875 1.97571 1.92998 1.32412 1.96530 1.97663 0.92551 0.87667 0.89142 0.74740 0.91000 0.90959 0.84305 0.85475 0.91119 0.91105 0.96255 0.96261 0.79394 0.93941 0.85460 0.84309 0.86776 0.89894 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.68 71.98 0.62 -0.27 16 2 C -0.15 -1.65 2.41 -11.54 -0.03 -1.68 16 3 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 4 C 0.51 9.54 6.93 87.66 0.61 10.15 16 5 O -0.57 -16.57 14.82 -3.05 -0.05 -16.62 16 6 N -0.71 -10.15 5.44 -466.80 -2.54 -12.69 16 7 C 0.17 2.81 5.80 85.63 0.50 3.31 16 8 C -0.11 -1.98 5.25 -19.87 -0.10 -2.08 16 9 C -0.10 -1.74 9.70 22.27 0.22 -1.53 16 10 C -0.12 -2.80 9.70 22.27 0.22 -2.59 16 11 C -0.07 -1.77 5.13 -19.87 -0.10 -1.87 16 12 C -0.08 -2.53 5.46 29.85 0.16 -2.37 16 13 C 0.16 6.42 6.24 86.38 0.54 6.96 16 14 N -0.75 -38.09 5.60 -343.46 -1.92 -40.02 16 15 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 16 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 17 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 18 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 19 Si 0.98 45.58 29.55 68.60 2.03 47.60 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 C -0.12 -2.80 9.70 22.27 0.22 -2.58 16 24 C -0.09 -1.73 9.70 22.27 0.22 -1.52 16 25 C 0.29 4.46 1.50 30.60 0.05 4.51 16 26 C -0.19 -1.15 9.14 71.98 0.66 -0.49 16 27 F -0.21 -4.66 15.75 44.97 0.71 -3.95 16 28 F -0.21 -4.89 15.82 44.97 0.71 -4.18 16 29 H 0.06 0.57 7.68 -2.38 -0.02 0.55 16 30 H 0.10 0.10 6.56 -2.39 -0.02 0.09 16 31 H 0.09 0.33 7.56 -2.39 -0.02 0.31 16 32 H 0.42 3.99 7.88 -92.71 -0.73 3.26 16 33 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 34 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 35 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.07 2.23 8.09 -2.38 -0.02 2.21 16 38 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.37 20.16 7.67 -92.71 -0.71 19.44 16 42 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 44 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 45 H 0.11 0.19 6.56 -2.39 -0.02 0.18 16 46 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -76.84 397.55 3.84 -73.00 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.45 Total: 24.69 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 5.07 Total: -9.01 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -4.18 Total: -111.54 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.05 Total: -16.62 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 1.42 Total: -8.13 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -76.84 3.84 -73.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690798751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.120 kcal (2) G-P(sol) polarization free energy of solvation -76.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds