Wall clock time and date at job start Tue Mar 31 2020 23:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47270 * 2 1 4 4 C 1.50701 * 109.46967 * 240.00055 * 2 1 3 5 5 O 1.21275 * 120.00528 * 245.38642 * 4 2 1 6 6 N 1.34777 * 120.00015 * 65.66190 * 4 2 1 7 7 C 1.46507 * 119.99711 * 4.55810 * 6 4 2 8 8 C 1.46492 * 120.00487 * 184.55460 * 6 4 2 9 9 C 1.52998 * 109.47157 * 89.99882 * 8 6 4 10 10 C 1.53004 * 109.47070 * 180.02562 * 9 8 6 11 11 N 1.46504 * 109.46847 * 180.02562 * 10 9 8 12 12 C 1.46504 * 119.99814 * 90.00422 * 11 10 9 13 13 C 1.36936 * 120.00230 * 269.99813 * 11 10 9 14 14 H 1.08004 * 119.99930 * 145.86484 * 13 11 10 15 15 C 1.38808 * 120.00085 * 325.87196 * 13 11 10 16 16 N 1.31618 * 120.00082 * 155.37252 * 15 13 11 17 17 Si 1.86805 * 120.00058 * 335.37819 * 15 13 11 18 18 H 1.48496 * 109.47096 * 95.16328 * 17 15 13 19 19 H 1.48499 * 109.46835 * 215.16784 * 17 15 13 20 20 H 1.48500 * 109.46557 * 335.16408 * 17 15 13 21 21 C 1.50697 * 109.46891 * 120.00501 * 2 1 3 22 22 C 1.38225 * 119.99134 * 59.72596 * 21 2 1 23 23 C 1.38189 * 120.04934 * 179.77098 * 22 21 2 24 24 C 1.38491 * 120.02841 * 0.49995 * 23 22 21 25 25 F 1.35096 * 120.01642 * 179.77373 * 24 23 22 26 26 C 1.38400 * 119.96835 * 359.75299 * 24 23 22 27 27 C 1.38438 * 119.95706 * 359.97438 * 26 24 23 28 28 F 1.35090 * 120.01648 * 180.02562 * 27 26 24 29 29 H 1.09004 * 109.47162 * 71.40193 * 1 2 3 30 30 H 1.08997 * 109.46795 * 191.40353 * 1 2 3 31 31 H 1.08999 * 109.46922 * 311.40281 * 1 2 3 32 32 H 1.09006 * 109.46968 * 95.63430 * 7 6 4 33 33 H 1.09004 * 109.46860 * 215.63260 * 7 6 4 34 34 H 1.09000 * 109.47331 * 335.63289 * 7 6 4 35 35 H 1.08996 * 109.47552 * 210.00493 * 8 6 4 36 36 H 1.09009 * 109.46747 * 330.00285 * 8 6 4 37 37 H 1.09001 * 109.47132 * 300.00327 * 9 8 6 38 38 H 1.08999 * 109.46986 * 60.00405 * 9 8 6 39 39 H 1.09001 * 109.47192 * 300.00023 * 10 9 8 40 40 H 1.08997 * 109.46927 * 60.00722 * 10 9 8 41 41 H 1.09000 * 109.47475 * 95.02081 * 12 11 10 42 42 H 1.09005 * 109.46661 * 215.02306 * 12 11 10 43 43 H 1.09001 * 109.46948 * 335.01533 * 12 11 10 44 44 H 0.97000 * 120.00343 * 179.97438 * 16 15 13 45 45 H 1.08005 * 119.97496 * 0.02562 * 22 21 2 46 46 H 1.08005 * 119.98597 * 180.25796 * 23 22 21 47 47 H 1.08008 * 120.02262 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.6469 -1.7503 -1.1220 6 7 1.8034 -0.1872 -2.4513 7 6 1.1548 1.1203 -2.5780 8 6 2.2032 -0.9259 -3.6516 9 6 1.0518 -1.8266 -4.1032 10 6 1.4696 -2.5985 -5.3564 11 7 0.3669 -3.4605 -5.7892 12 6 -0.6324 -2.9533 -6.7329 13 6 0.2702 -4.7403 -5.3118 14 1 -0.7009 -5.1815 -5.1422 15 6 1.4203 -5.4705 -5.0455 16 7 1.3877 -6.4543 -4.1718 17 14 3.0144 -5.0568 -5.9272 18 1 3.8266 -4.1466 -5.0803 19 1 3.7762 -6.3052 -6.1843 20 1 2.7073 -4.3895 -7.2178 21 6 2.0323 -0.7105 1.2304 22 6 1.6936 -2.0322 1.4517 23 6 2.1574 -2.6863 2.5771 24 6 2.9537 -2.0151 3.4900 25 9 3.4032 -2.6535 4.5925 26 6 3.2892 -0.6902 3.2720 27 6 2.8287 -0.0375 2.1414 28 9 3.1558 1.2556 1.9272 29 1 -0.3634 0.3278 -0.9740 30 1 -0.3633 -1.0074 0.2032 31 1 -0.3633 0.6796 0.7708 32 1 1.9150 1.8940 -2.6860 33 1 0.5080 1.1215 -3.4554 34 1 0.5590 1.3182 -1.6870 35 1 2.4474 -0.2219 -4.4470 36 1 3.0769 -1.5380 -3.4273 37 1 0.8078 -2.5307 -3.3077 38 1 0.1782 -1.2146 -4.3274 39 1 1.7140 -1.8947 -6.1521 40 1 2.3430 -3.2107 -5.1317 41 1 -0.3541 -3.2415 -7.7466 42 1 -1.6080 -3.3746 -6.4902 43 1 -0.6786 -1.8665 -6.6638 44 1 2.1913 -6.9649 -3.9860 45 1 1.0693 -2.5553 0.7424 46 1 1.8955 -3.7203 2.7469 47 1 3.9106 -0.1660 3.9832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717215779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:16 Heat of formation + Delta-G solvation = -65.201156 kcal Electronic energy + Delta-G solvation = -30218.491202 eV Core-core repulsion = 25845.780999 eV Total energy + Delta-G solvation = -4372.710203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.26179 -49.16522 -40.47555 -38.74036 -36.48121 -35.43617 -34.42044 -31.90970 -31.10639 -30.92199 -29.28943 -27.12380 -26.41607 -25.67045 -24.44837 -23.31819 -22.53415 -21.38116 -20.63236 -19.06487 -18.45551 -17.71549 -16.82158 -16.67838 -16.41801 -16.14445 -15.84499 -15.58025 -15.49575 -15.21027 -15.18646 -14.65966 -14.36844 -14.24642 -13.71048 -13.53510 -13.49235 -13.24038 -13.04606 -12.83471 -12.63473 -12.57952 -12.21860 -12.05722 -11.98550 -11.86538 -11.76855 -11.40909 -11.35330 -11.25115 -11.06458 -10.81618 -10.41669 -10.38806 -9.73462 -9.62562 -9.42332 -9.21669 -8.80425 -8.57488 -8.43664 -6.82983 -5.95476 -3.31984 0.72989 0.85901 2.67955 2.94827 3.27628 3.36155 3.50442 3.55023 3.65114 4.12104 4.23227 4.32593 4.51409 4.57457 4.70397 4.85145 4.87300 4.97152 5.02145 5.05409 5.26160 5.30469 5.40311 5.42597 5.48501 5.54304 5.60023 5.67962 5.74184 5.78752 5.86755 5.91478 5.97654 6.03560 6.10703 6.15331 6.24524 6.35644 6.54396 6.56896 6.68785 6.71310 6.82269 7.07372 7.43039 8.07382 8.25178 8.39169 9.02131 9.76445 10.15223 11.20441 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.003205 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.279314 B = 8734.602038 C =10015.815652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.071 4.071 3 H 0.106 0.894 4 C 0.515 3.485 5 O -0.519 6.519 6 N -0.612 5.612 7 C 0.064 3.936 8 C 0.113 3.887 9 C -0.144 4.144 10 C 0.141 3.859 11 N -0.613 5.613 12 C 0.127 3.873 13 C -0.273 4.273 14 H 0.078 0.922 15 C 0.038 3.962 16 N -0.896 5.896 17 Si 0.874 3.126 18 H -0.283 1.283 19 H -0.302 1.302 20 H -0.272 1.272 21 C -0.110 4.110 22 C -0.023 4.023 23 C -0.160 4.160 24 C 0.128 3.872 25 F -0.133 7.133 26 C -0.196 4.196 27 C 0.133 3.867 28 F -0.132 7.132 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.054 0.946 41 H 0.007 0.993 42 H 0.037 0.963 43 H 0.030 0.970 44 H 0.263 0.737 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 18.877 12.217 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 H 0.124 0.876 4 C 0.302 3.698 5 O -0.394 6.394 6 N -0.346 5.346 7 C -0.079 4.079 8 C -0.009 4.009 9 C -0.186 4.186 10 C 0.014 3.986 11 N -0.337 5.337 12 C -0.019 4.019 13 C -0.401 4.401 14 H 0.096 0.904 15 C -0.163 4.163 16 N -0.537 5.537 17 Si 0.705 3.295 18 H -0.211 1.211 19 H -0.230 1.230 20 H -0.197 1.197 21 C -0.112 4.112 22 C -0.041 4.041 23 C -0.179 4.179 24 C 0.109 3.891 25 F -0.112 7.112 26 C -0.216 4.216 27 C 0.113 3.887 28 F -0.110 7.110 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.073 0.927 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.110 18.191 12.347 21.986 hybrid contribution 1.185 0.339 -0.323 1.274 sum 1.075 18.530 12.024 22.115 Atomic orbital electron populations 1.22042 0.91299 1.03940 1.03468 1.20190 0.98281 1.00372 0.90408 0.87558 1.20307 0.79874 0.85476 0.84166 1.90778 1.39485 1.23206 1.85944 1.47819 1.60585 1.20087 1.06097 1.22102 0.97885 0.84194 1.03760 1.21616 0.99320 0.94942 0.85052 1.22465 0.96771 0.98189 1.01127 1.21085 0.91990 0.92500 0.92986 1.44047 1.28836 1.11234 1.49542 1.21038 0.92984 0.95799 0.92052 1.18761 0.93982 0.88527 1.38826 0.90394 1.25345 0.97770 0.95764 0.97425 1.69886 1.29086 1.23446 1.31282 0.86991 0.84673 0.76379 0.81485 1.21135 1.22966 1.19678 1.19422 1.00457 0.95420 0.95863 1.20812 0.96186 0.92194 0.94899 1.21256 1.00070 1.01757 0.94818 1.17308 0.96912 0.90232 0.84682 1.91524 1.87370 1.81573 1.50704 1.20888 1.06254 0.94690 0.99769 1.17034 0.97667 0.78997 0.94953 1.91489 1.90928 1.33989 1.94637 0.90334 0.91104 0.91089 0.92700 0.90883 0.89887 0.91073 0.89903 0.90835 0.92925 0.94480 0.92779 0.97437 0.94409 0.95155 0.92717 0.83571 0.83713 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.61 37.16 0.32 -1.00 16 2 C -0.07 -0.79 2.05 -92.92 -0.19 -0.98 16 3 H 0.11 1.00 6.73 -51.93 -0.35 0.65 16 4 C 0.52 7.69 6.88 -10.98 -0.08 7.61 16 5 O -0.52 -10.13 14.49 5.56 0.08 -10.05 16 6 N -0.61 -8.19 2.87 -181.57 -0.52 -8.71 16 7 C 0.06 0.55 9.72 59.85 0.58 1.13 16 8 C 0.11 1.78 5.47 -4.05 -0.02 1.76 16 9 C -0.14 -2.70 5.86 -26.73 -0.16 -2.86 16 10 C 0.14 3.05 4.51 -4.04 -0.02 3.03 16 11 N -0.61 -14.86 2.54 -181.11 -0.46 -15.32 16 12 C 0.13 2.53 10.69 59.85 0.64 3.17 16 13 C -0.27 -7.81 9.95 -15.06 -0.15 -7.96 16 14 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 15 C 0.04 1.11 5.29 -17.43 -0.09 1.02 16 16 N -0.90 -27.98 13.97 55.49 0.78 -27.20 16 17 Si 0.87 22.86 25.06 -169.99 -4.26 18.60 16 18 H -0.28 -7.24 6.62 56.52 0.37 -6.86 16 19 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 20 H -0.27 -6.94 7.11 56.52 0.40 -6.53 16 21 C -0.11 -1.33 4.45 -104.55 -0.47 -1.80 16 22 C -0.02 -0.29 7.73 -39.60 -0.31 -0.59 16 23 C -0.16 -1.86 10.02 -39.51 -0.40 -2.25 16 24 C 0.13 1.47 7.30 -39.43 -0.29 1.18 16 25 F -0.13 -1.55 17.27 2.25 0.04 -1.51 16 26 C -0.20 -2.11 10.01 -39.45 -0.39 -2.50 16 27 C 0.13 1.53 7.24 -39.43 -0.29 1.24 16 28 F -0.13 -1.47 16.19 2.25 0.04 -1.43 16 29 H 0.08 0.63 5.42 -51.93 -0.28 0.35 16 30 H 0.07 0.68 7.03 -51.93 -0.37 0.32 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 34 H 0.08 0.57 4.13 -51.93 -0.21 0.35 16 35 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.08 1.53 7.36 -51.92 -0.38 1.15 16 37 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.05 1.32 2.98 -51.93 -0.15 1.17 16 41 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 43 H 0.03 0.51 8.03 -51.93 -0.42 0.09 16 44 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 45 H 0.15 1.90 7.36 -52.48 -0.39 1.52 16 46 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 47 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -34.34 383.61 -6.60 -40.95 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.77 Total: -1.31 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.30 Total: 0.22 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.21 Total: -51.24 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.26 Total: 18.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.34 -6.60 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717215779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.255 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds