Wall clock time and date at job start Tue Mar 31 2020 23:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46651 * 2 1 4 4 C 1.52995 * 109.47568 * 239.99641 * 2 1 3 5 5 C 1.52998 * 109.47347 * 174.99785 * 4 2 1 6 6 C 1.53004 * 109.46929 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47038 * 180.02562 * 6 5 4 8 8 C 1.36935 * 119.99767 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00310 * 359.97438 * 8 7 6 10 10 C 1.38817 * 119.99639 * 180.02562 * 8 7 6 11 11 N 1.31625 * 120.00243 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99889 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47143 * 89.99905 * 12 10 8 14 14 H 1.48498 * 109.46864 * 209.99556 * 12 10 8 15 15 H 1.48497 * 109.46821 * 329.99825 * 12 10 8 16 16 N 1.46505 * 109.47206 * 119.99347 * 2 1 3 17 17 C 1.34773 * 120.00065 * 275.00050 * 16 2 1 18 18 O 1.21282 * 120.00084 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00201 * 179.97438 * 17 16 2 20 20 C 1.52998 * 109.47493 * 180.02562 * 19 17 16 21 21 C 1.50693 * 109.47462 * 180.02562 * 20 19 17 22 22 C 1.38238 * 119.98747 * 265.23450 * 21 20 19 23 23 C 1.38182 * 120.04926 * 180.23109 * 22 21 20 24 24 C 1.38497 * 120.02770 * 359.78734 * 23 22 21 25 25 F 1.35103 * 120.01374 * 180.02562 * 24 23 22 26 26 C 1.38397 * 119.97392 * 359.97438 * 24 23 22 27 27 C 1.38438 * 119.94948 * 0.02562 * 26 24 23 28 28 F 1.35104 * 120.01364 * 179.97438 * 27 26 24 29 29 H 1.08999 * 109.47082 * 300.00248 * 1 2 3 30 30 H 1.08998 * 109.47627 * 60.00730 * 1 2 3 31 31 H 1.09002 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46979 * 295.00108 * 4 2 1 33 33 H 1.09004 * 109.46788 * 54.99390 * 4 2 1 34 34 H 1.08997 * 109.47045 * 299.99487 * 5 4 2 35 35 H 1.08995 * 109.47264 * 60.00009 * 5 4 2 36 36 H 1.09004 * 109.47138 * 300.00165 * 6 5 4 37 37 H 1.08995 * 109.47190 * 59.99903 * 6 5 4 38 38 H 0.96998 * 120.00019 * 359.97438 * 7 6 5 39 39 H 0.96993 * 120.00244 * 180.02562 * 11 10 8 40 40 H 0.96993 * 119.99654 * 95.00219 * 16 2 1 41 41 H 1.09004 * 109.46785 * 60.00354 * 19 17 16 42 42 H 1.08993 * 109.47111 * 300.00423 * 19 17 16 43 43 H 1.08998 * 109.46960 * 59.99807 * 20 19 17 44 44 H 1.09007 * 109.47243 * 300.00323 * 20 19 17 45 45 H 1.08004 * 119.97328 * 359.97167 * 22 21 20 46 46 H 1.08004 * 119.98465 * 179.76793 * 23 22 21 47 47 H 1.07995 * 120.02726 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3341 -2.5631 7 7 5.5349 -1.2312 -2.6245 8 6 6.2186 -1.8046 -3.6632 9 1 5.6815 -2.3331 -4.4368 10 6 7.6022 -1.7076 -3.7210 11 7 8.2568 -1.0639 -2.7778 12 14 8.5350 -2.4905 -5.1375 13 1 8.6682 -1.5098 -6.2447 14 1 9.8850 -2.9006 -4.6745 15 1 7.7932 -3.6833 -5.6194 16 7 2.0184 -0.6905 1.1963 17 6 2.1471 -0.0180 2.3572 18 8 1.8582 1.1586 2.4116 19 6 2.6489 -0.7284 3.5878 20 6 2.6999 0.2547 4.7591 21 6 3.2023 -0.4555 5.9896 22 6 2.3038 -0.9853 6.8968 23 6 2.7630 -1.6327 8.0279 24 6 4.1243 -1.7552 8.2518 25 9 4.5730 -2.3886 9.3576 26 6 5.0247 -1.2295 7.3418 27 6 4.5635 -0.5812 6.2088 28 9 5.4414 -0.0671 5.3199 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7716 -1.2054 33 1 1.6054 -0.2619 -2.1369 34 1 3.8532 0.4370 -1.3574 35 1 3.9995 -1.0726 -0.4258 36 1 3.7865 -2.3844 -2.5198 37 1 3.6402 -0.8743 -3.4506 38 1 6.0173 -0.7562 -1.9298 39 1 9.2235 -0.9957 -2.8185 40 1 2.2491 -1.6316 1.1528 41 1 3.6481 -1.1209 3.3987 42 1 1.9760 -1.5502 3.8327 43 1 1.7006 0.6468 4.9480 44 1 3.3725 1.0768 4.5144 45 1 1.2420 -0.8896 6.7234 46 1 2.0601 -2.0429 8.7379 47 1 6.0864 -1.3249 7.5153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717690607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:47 Heat of formation + Delta-G solvation = -118.757984 kcal Electronic energy + Delta-G solvation = -28232.389078 eV Core-core repulsion = 23857.356477 eV Total energy + Delta-G solvation = -4375.032601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.40134 -49.30034 -40.10072 -39.30113 -36.86910 -34.86465 -34.24003 -32.59764 -31.37552 -31.18277 -29.72132 -29.20411 -25.74879 -25.07553 -23.63581 -23.03247 -22.00109 -20.96782 -20.73922 -20.42639 -18.59115 -17.66437 -17.43695 -17.00585 -16.44595 -16.25308 -16.22879 -15.69765 -15.63520 -15.51054 -14.80397 -14.68119 -14.53852 -14.35510 -14.00714 -13.92120 -13.62122 -13.39854 -12.99164 -12.97817 -12.92976 -12.58418 -12.30322 -12.13114 -12.06790 -11.94464 -11.77081 -11.32910 -11.30259 -11.15385 -10.85172 -10.80316 -10.46110 -10.40754 -10.01008 -9.91957 -9.67722 -9.51574 -9.11144 -9.01298 -8.85584 -6.90368 -5.74819 -3.03650 0.48195 0.55564 2.57584 2.85293 3.13690 3.44251 3.45411 3.48899 3.50993 3.98385 4.11925 4.19389 4.39144 4.56562 4.62221 4.64590 4.74235 4.85992 4.91806 5.05649 5.15272 5.26858 5.31895 5.36346 5.41473 5.46834 5.50468 5.56380 5.58570 5.60578 5.62293 5.78651 5.81439 5.88852 5.95812 6.05128 6.12636 6.21294 6.32404 6.36333 6.41524 6.48978 6.87231 6.90589 7.43843 7.70798 8.16167 8.44222 9.54894 10.14066 10.48297 11.48156 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009448 B = 0.002152 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.015660 B =13008.038501 C =15408.226255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.721 5.721 17 C 0.516 3.484 18 O -0.544 6.544 19 C -0.139 4.139 20 C -0.064 4.064 21 C -0.126 4.126 22 C -0.058 4.058 23 C -0.163 4.163 24 C 0.125 3.875 25 F -0.133 7.133 26 C -0.190 4.190 27 C 0.136 3.864 28 F -0.123 7.123 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.401 0.599 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.345 -0.974 22.693 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.373 5.373 17 C 0.302 3.698 18 O -0.421 6.421 19 C -0.179 4.179 20 C -0.101 4.101 21 C -0.127 4.127 22 C -0.076 4.076 23 C -0.182 4.182 24 C 0.105 3.895 25 F -0.111 7.111 26 C -0.210 4.210 27 C 0.116 3.884 28 F -0.101 7.101 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.236 0.764 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.162 0.838 46 H 0.160 0.840 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.459 -0.222 22.569 28.534 hybrid contribution 1.269 -0.859 -0.517 1.617 sum -16.190 -1.082 22.052 27.378 Atomic orbital electron populations 1.22163 0.95508 1.01916 1.02367 1.21044 0.93542 0.97836 0.83997 0.89364 1.21850 0.96898 1.00735 0.96638 1.21728 0.93626 1.01455 0.99510 1.20648 0.86198 0.96419 0.94220 1.42384 1.00201 1.66290 1.28992 1.19241 0.89442 1.27163 1.01246 0.91220 1.24764 0.96465 1.01278 0.98650 1.69664 1.07205 1.47072 1.34308 0.86182 0.79381 0.78811 0.81782 1.21711 1.21752 1.20777 1.46125 1.67242 1.14200 1.09735 1.20541 0.77310 0.87313 0.84630 1.90701 1.50229 1.15981 1.85181 1.21667 1.03858 0.99525 0.92807 1.20264 1.03463 0.97099 0.89288 1.20073 0.91392 1.02107 0.99111 1.20832 1.00148 0.94739 0.91917 1.21214 0.93752 1.03165 1.00031 1.17319 0.92181 0.95736 0.84257 1.91540 1.89922 1.79417 1.50231 1.21085 1.01714 1.03301 0.94887 1.17212 0.86688 0.96452 0.88025 1.91584 1.68104 1.84214 1.66240 0.92381 0.91590 0.92583 0.91451 0.90323 0.91974 0.92058 0.96605 0.96524 0.78329 0.93507 0.76445 0.88444 0.88627 0.89338 0.89391 0.83767 0.83972 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 2 C 0.14 1.55 2.57 -67.93 -0.17 1.38 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 4 C -0.12 -1.42 4.75 -26.73 -0.13 -1.55 16 5 C -0.13 -1.97 5.22 -26.73 -0.14 -2.11 16 6 C 0.15 3.07 6.26 -4.04 -0.03 3.04 16 7 N -0.73 -19.09 5.60 -59.91 -0.34 -19.43 16 8 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 9 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 12 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 N -0.72 -7.37 4.53 -53.80 -0.24 -7.61 16 17 C 0.52 5.84 7.79 -10.99 -0.09 5.75 16 18 O -0.54 -8.12 15.64 5.56 0.09 -8.03 16 19 C -0.14 -1.14 5.68 -27.88 -0.16 -1.30 16 20 C -0.06 -0.54 4.41 -27.89 -0.12 -0.66 16 21 C -0.13 -0.98 5.14 -104.55 -0.54 -1.52 16 22 C -0.06 -0.34 9.68 -39.60 -0.38 -0.72 16 23 C -0.16 -0.99 10.02 -39.51 -0.40 -1.39 16 24 C 0.12 0.97 7.30 -39.43 -0.29 0.68 16 25 F -0.13 -1.14 17.27 2.25 0.04 -1.10 16 26 C -0.19 -1.58 10.01 -39.45 -0.39 -1.97 16 27 C 0.14 1.24 7.24 -39.43 -0.29 0.96 16 28 F -0.12 -1.37 16.56 2.25 0.04 -1.33 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.40 3.32 8.60 -40.82 -0.35 2.97 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.70 8.01 -51.93 -0.42 0.28 16 44 H 0.09 0.92 7.75 -51.93 -0.40 0.52 16 45 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 46 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 47 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -34.12 403.68 -8.96 -43.09 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.32 Total: 6.91 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -3.01 Total: -8.15 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.15 Total: -55.13 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.08 Total: -2.44 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.12 -8.96 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717690607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.668 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds