Wall clock time and date at job start Tue Mar 31 2020 23:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46861 * 2 1 4 4 C 1.52998 * 109.47304 * 120.00434 * 2 1 3 5 5 C 1.53003 * 109.47005 * 185.00508 * 4 2 1 6 6 C 1.52998 * 109.47005 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.47416 * 179.97438 * 6 5 4 8 8 C 1.36937 * 120.00486 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.38814 * 119.99872 * 179.97438 * 8 7 6 11 11 N 1.31613 * 120.00122 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99578 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47317 * 90.00263 * 12 10 8 14 14 H 1.48501 * 109.46984 * 210.00465 * 12 10 8 15 15 H 1.48502 * 109.47310 * 330.00025 * 12 10 8 16 16 N 1.46505 * 109.47164 * 240.00463 * 2 1 3 17 17 C 1.34773 * 120.00065 * 84.99503 * 16 2 1 18 18 O 1.21282 * 120.00084 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00201 * 179.97438 * 17 16 2 20 20 C 1.52998 * 109.47493 * 180.02562 * 19 17 16 21 21 C 1.50693 * 109.47462 * 180.02562 * 20 19 17 22 22 C 1.38238 * 119.98747 * 265.23450 * 21 20 19 23 23 C 1.38182 * 120.04926 * 180.23109 * 22 21 20 24 24 C 1.38497 * 120.02770 * 359.78734 * 23 22 21 25 25 F 1.35103 * 120.01374 * 180.02562 * 24 23 22 26 26 C 1.38397 * 119.97392 * 359.97438 * 24 23 22 27 27 C 1.38438 * 119.94948 * 0.02562 * 26 24 23 28 28 F 1.35104 * 120.01364 * 179.97438 * 27 26 24 29 29 H 1.09005 * 109.46855 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46737 * 299.99538 * 1 2 3 31 31 H 1.09004 * 109.47109 * 59.99909 * 1 2 3 32 32 H 1.09008 * 109.46796 * 304.99798 * 4 2 1 33 33 H 1.08995 * 109.47288 * 64.99748 * 4 2 1 34 34 H 1.09008 * 109.46764 * 299.99310 * 5 4 2 35 35 H 1.08995 * 109.47718 * 59.99503 * 5 4 2 36 36 H 1.09001 * 109.47188 * 299.99796 * 6 5 4 37 37 H 1.08995 * 109.47288 * 59.99240 * 6 5 4 38 38 H 0.97007 * 119.99301 * 359.97438 * 7 6 5 39 39 H 0.97005 * 119.99798 * 179.97438 * 11 10 8 40 40 H 0.96993 * 119.99654 * 264.99671 * 16 2 1 41 41 H 1.09004 * 109.46785 * 60.00354 * 19 17 16 42 42 H 1.08993 * 109.47111 * 300.00423 * 19 17 16 43 43 H 1.08998 * 109.46960 * 59.99807 * 20 19 17 44 44 H 1.09007 * 109.47243 * 300.00323 * 20 19 17 45 45 H 1.08004 * 119.97328 * 359.97167 * 22 21 20 46 46 H 1.08004 * 119.98465 * 179.76793 * 23 22 21 47 47 H 1.07995 * 120.02726 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0750 -1.3351 2.5624 7 7 5.5351 -1.2322 2.6239 8 6 6.2189 -1.8065 3.6620 9 1 5.6818 -2.3351 4.4356 10 6 7.6025 -1.7094 3.7198 11 7 8.2569 -1.0648 2.7772 12 14 8.5352 -2.4923 5.1363 13 1 8.8965 -3.8878 4.7799 14 1 9.7712 -1.7142 5.4052 15 1 7.6795 -2.4970 6.3500 16 7 2.0184 -0.6905 -1.1963 17 6 2.1470 -0.0181 -2.3572 18 8 1.8589 1.1587 -2.4115 19 6 2.6499 -0.7283 -3.5876 20 6 2.7018 0.2550 -4.7586 21 6 3.2040 -0.4553 -5.9891 22 6 4.5469 -0.4087 -6.3140 23 6 5.0081 -1.0556 -7.4446 24 6 4.1260 -1.7550 -8.2513 25 9 4.5773 -2.3878 -9.3564 26 6 2.7822 -1.8065 -7.9243 27 6 2.3212 -1.1581 -6.7914 28 9 1.0096 -1.2070 -6.4713 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0728 0.4258 35 1 3.8533 0.4370 1.3573 36 1 3.6404 -0.8761 3.4504 37 1 3.7867 -2.3853 2.5183 38 1 6.0174 -0.7571 1.9291 39 1 9.2237 -0.9966 2.8179 40 1 2.2491 -1.6316 -1.1527 41 1 1.9777 -1.5506 -3.8327 42 1 3.6492 -1.1200 -3.3980 43 1 3.3741 1.0770 -4.5133 44 1 1.7025 0.6472 -4.9483 45 1 5.2354 0.1372 -5.6859 46 1 6.0568 -1.0154 -7.6995 47 1 2.0936 -2.3520 -8.5525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717690608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:49 Heat of formation + Delta-G solvation = -119.261306 kcal Electronic energy + Delta-G solvation = -28159.924885 eV Core-core repulsion = 23784.870458 eV Total energy + Delta-G solvation = -4375.054427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.40871 -49.38660 -40.10075 -39.30265 -36.87290 -34.87769 -34.24218 -32.60789 -31.37978 -31.18861 -29.72924 -29.20684 -25.75430 -25.08024 -23.64614 -23.04416 -22.01107 -20.97545 -20.74849 -20.42675 -18.62241 -17.68139 -17.43940 -17.02385 -16.46868 -16.29010 -16.22189 -15.72554 -15.67955 -15.51747 -14.81235 -14.70085 -14.54967 -14.32853 -14.13483 -13.82799 -13.62391 -13.36226 -13.10560 -12.96677 -12.91959 -12.58486 -12.30652 -12.12405 -12.06747 -11.94742 -11.77605 -11.33303 -11.30841 -11.15747 -10.86913 -10.80968 -10.48319 -10.41096 -10.02409 -9.92088 -9.69359 -9.52573 -9.11060 -9.02294 -8.87306 -6.92206 -5.76922 -3.05504 0.47763 0.55007 2.57725 2.85303 3.13694 3.42680 3.42824 3.47800 3.49751 3.96637 4.12380 4.18210 4.40279 4.55446 4.61393 4.65768 4.74337 4.84793 4.93042 5.05271 5.15027 5.27354 5.29716 5.38165 5.41581 5.47635 5.49695 5.56381 5.57213 5.61682 5.62809 5.78368 5.81613 5.89280 5.95379 6.05981 6.11626 6.20500 6.31562 6.34958 6.40050 6.48969 6.85725 6.89205 7.43854 7.69279 8.16182 8.42303 9.53084 10.12068 10.46390 11.46116 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.002065 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.954050 B =13554.775296 C =15904.658822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.152 3.848 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.721 5.721 17 C 0.516 3.484 18 O -0.544 6.544 19 C -0.139 4.139 20 C -0.064 4.064 21 C -0.124 4.124 22 C -0.056 4.056 23 C -0.159 4.159 24 C 0.124 3.876 25 F -0.133 7.133 26 C -0.191 4.191 27 C 0.132 3.868 28 F -0.128 7.128 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.401 0.599 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.801 -0.274 -22.022 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.208 1.208 16 N -0.373 5.373 17 C 0.302 3.698 18 O -0.421 6.421 19 C -0.179 4.179 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.074 4.074 23 C -0.178 4.178 24 C 0.105 3.895 25 F -0.111 7.111 26 C -0.211 4.211 27 C 0.112 3.888 28 F -0.106 7.106 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.216 0.784 39 H 0.065 0.935 40 H 0.236 0.764 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.165 0.835 46 H 0.162 0.838 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.014 0.469 -21.912 26.566 hybrid contribution 0.722 -1.025 0.366 1.306 sum -14.292 -0.556 -21.545 25.861 Atomic orbital electron populations 1.22171 0.95518 1.01954 1.02382 1.21042 0.93561 0.97804 0.83979 0.89358 1.21852 0.96882 1.00759 0.96649 1.21725 0.93636 1.01415 0.99486 1.20651 0.86180 0.96434 0.94252 1.42381 1.00197 1.66229 1.29049 1.19246 0.89444 1.27069 1.01298 0.91216 1.24753 0.96460 1.01245 0.98690 1.69661 1.07185 1.46986 1.34467 0.86182 0.79511 0.78639 0.81824 1.21721 1.21744 1.20766 1.46126 1.67248 1.14200 1.09733 1.20540 0.77350 0.87312 0.84589 1.90701 1.50242 1.16010 1.85142 1.21667 1.03837 0.99575 0.92775 1.20267 1.03591 0.97040 0.89227 1.20073 0.93665 1.00484 0.98326 1.20918 0.94164 0.96830 0.95482 1.21270 1.00781 0.99863 0.95925 1.17324 0.91809 0.95415 0.84985 1.91540 1.89446 1.79803 1.50311 1.21025 0.95629 1.05191 0.99258 1.17163 0.78369 0.98669 0.94572 1.91538 1.32204 1.94570 1.92314 0.92572 0.91585 0.92359 0.90320 0.91445 0.92077 0.91976 0.96507 0.96591 0.78354 0.93524 0.76444 0.88844 0.88221 0.89098 0.89618 0.83464 0.83791 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 2 C 0.14 1.56 2.57 -67.93 -0.17 1.38 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 4 C -0.12 -1.41 4.75 -26.73 -0.13 -1.54 16 5 C -0.12 -1.92 5.22 -26.73 -0.14 -2.06 16 6 C 0.15 3.02 6.26 -4.04 -0.03 2.99 16 7 N -0.73 -18.82 5.60 -59.91 -0.34 -19.15 16 8 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 12 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 16 N -0.72 -7.37 4.53 -53.80 -0.24 -7.61 16 17 C 0.52 5.84 7.79 -10.99 -0.09 5.75 16 18 O -0.54 -8.12 15.64 5.56 0.09 -8.03 16 19 C -0.14 -1.14 5.68 -27.88 -0.16 -1.30 16 20 C -0.06 -0.54 4.41 -27.89 -0.12 -0.66 16 21 C -0.12 -0.97 5.14 -104.55 -0.54 -1.51 16 22 C -0.06 -0.37 9.68 -39.60 -0.38 -0.76 16 23 C -0.16 -1.07 10.02 -39.51 -0.40 -1.47 16 24 C 0.12 0.97 7.30 -39.43 -0.29 0.68 16 25 F -0.13 -1.14 17.27 2.25 0.04 -1.10 16 26 C -0.19 -1.46 10.01 -39.45 -0.39 -1.85 16 27 C 0.13 1.09 7.24 -39.43 -0.29 0.81 16 28 F -0.13 -1.18 16.56 2.25 0.04 -1.14 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.94 7.75 -51.92 -0.40 0.54 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16 39 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.40 3.33 8.60 -40.82 -0.35 2.97 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.79 8.01 -51.93 -0.42 0.38 16 44 H 0.09 0.82 7.75 -51.93 -0.40 0.42 16 45 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 46 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -33.49 403.68 -8.96 -42.46 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.32 Total: 7.00 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -3.01 Total: -8.23 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.15 Total: -54.46 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.08 Total: -2.24 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.49 -8.96 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717690608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.806 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds