Wall clock time and date at job start Tue Mar 31 2020 23:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46861 * 2 1 4 4 C 1.52998 * 109.47304 * 120.00434 * 2 1 3 5 5 C 1.53003 * 109.47005 * 185.00508 * 4 2 1 6 6 C 1.52998 * 109.47005 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.47416 * 179.97438 * 6 5 4 8 8 C 1.36937 * 120.00486 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.38814 * 119.99872 * 179.97438 * 8 7 6 11 11 N 1.31613 * 120.00122 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99578 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47317 * 90.00263 * 12 10 8 14 14 H 1.48501 * 109.46984 * 210.00465 * 12 10 8 15 15 H 1.48502 * 109.47310 * 330.00025 * 12 10 8 16 16 N 1.46505 * 109.47164 * 240.00463 * 2 1 3 17 17 C 1.34773 * 120.00065 * 84.99503 * 16 2 1 18 18 O 1.21282 * 120.00084 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00201 * 179.97438 * 17 16 2 20 20 C 1.52998 * 109.47493 * 180.02562 * 19 17 16 21 21 C 1.50693 * 109.47462 * 180.02562 * 20 19 17 22 22 C 1.38238 * 119.98747 * 265.23450 * 21 20 19 23 23 C 1.38182 * 120.04926 * 180.23109 * 22 21 20 24 24 C 1.38497 * 120.02770 * 359.78734 * 23 22 21 25 25 F 1.35103 * 120.01374 * 180.02562 * 24 23 22 26 26 C 1.38397 * 119.97392 * 359.97438 * 24 23 22 27 27 C 1.38438 * 119.94948 * 0.02562 * 26 24 23 28 28 F 1.35104 * 120.01364 * 179.97438 * 27 26 24 29 29 H 1.09005 * 109.46855 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46737 * 299.99538 * 1 2 3 31 31 H 1.09004 * 109.47109 * 59.99909 * 1 2 3 32 32 H 1.09008 * 109.46796 * 304.99798 * 4 2 1 33 33 H 1.08995 * 109.47288 * 64.99748 * 4 2 1 34 34 H 1.09008 * 109.46764 * 299.99310 * 5 4 2 35 35 H 1.08995 * 109.47718 * 59.99503 * 5 4 2 36 36 H 1.09001 * 109.47188 * 299.99796 * 6 5 4 37 37 H 1.08995 * 109.47288 * 59.99240 * 6 5 4 38 38 H 0.97007 * 119.99301 * 359.97438 * 7 6 5 39 39 H 0.97005 * 119.99798 * 179.97438 * 11 10 8 40 40 H 0.96993 * 119.99654 * 264.99671 * 16 2 1 41 41 H 1.09004 * 109.46785 * 60.00354 * 19 17 16 42 42 H 1.08993 * 109.47111 * 300.00423 * 19 17 16 43 43 H 1.08998 * 109.46960 * 59.99807 * 20 19 17 44 44 H 1.09007 * 109.47243 * 300.00323 * 20 19 17 45 45 H 1.08004 * 119.97328 * 359.97167 * 22 21 20 46 46 H 1.08004 * 119.98465 * 179.76793 * 23 22 21 47 47 H 1.07995 * 120.02726 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0750 -1.3351 2.5624 7 7 5.5351 -1.2322 2.6239 8 6 6.2189 -1.8065 3.6620 9 1 5.6818 -2.3351 4.4356 10 6 7.6025 -1.7094 3.7198 11 7 8.2569 -1.0648 2.7772 12 14 8.5352 -2.4923 5.1363 13 1 8.8965 -3.8878 4.7799 14 1 9.7712 -1.7142 5.4052 15 1 7.6795 -2.4970 6.3500 16 7 2.0184 -0.6905 -1.1963 17 6 2.1470 -0.0181 -2.3572 18 8 1.8589 1.1587 -2.4115 19 6 2.6499 -0.7283 -3.5876 20 6 2.7018 0.2550 -4.7586 21 6 3.2040 -0.4553 -5.9891 22 6 4.5469 -0.4087 -6.3140 23 6 5.0081 -1.0556 -7.4446 24 6 4.1260 -1.7550 -8.2513 25 9 4.5773 -2.3878 -9.3564 26 6 2.7822 -1.8065 -7.9243 27 6 2.3212 -1.1581 -6.7914 28 9 1.0096 -1.2070 -6.4713 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2618 2.1370 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0728 0.4258 35 1 3.8533 0.4370 1.3573 36 1 3.6404 -0.8761 3.4504 37 1 3.7867 -2.3853 2.5183 38 1 6.0174 -0.7571 1.9291 39 1 9.2237 -0.9966 2.8179 40 1 2.2491 -1.6316 -1.1527 41 1 1.9777 -1.5506 -3.8327 42 1 3.6492 -1.1200 -3.3980 43 1 3.3741 1.0770 -4.5133 44 1 1.7025 0.6472 -4.9483 45 1 5.2354 0.1372 -5.6859 46 1 6.0568 -1.0154 -7.6995 47 1 2.0936 -2.3520 -8.5525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717690608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:48 Heat of formation + Delta-G solvation = -138.593310 kcal Electronic energy + Delta-G solvation = -28160.763184 eV Core-core repulsion = 23784.870458 eV Total energy + Delta-G solvation = -4375.892726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.05265 -50.01945 -40.97077 -39.92974 -37.99518 -36.51241 -34.95817 -34.15695 -32.60761 -31.84807 -31.00957 -30.06322 -27.23254 -25.88451 -24.72532 -24.20858 -22.79968 -22.32101 -21.71500 -21.29866 -19.23272 -19.12174 -18.29608 -18.25334 -17.32705 -16.96781 -16.87719 -16.63878 -16.47779 -16.33744 -16.20203 -15.82564 -15.45719 -15.40752 -15.24155 -14.92274 -14.86434 -14.44116 -14.32374 -13.81230 -13.62835 -13.55855 -13.40765 -13.16175 -13.02013 -12.76972 -12.71233 -12.58560 -12.40993 -12.36215 -12.23109 -12.06702 -11.97901 -11.84688 -11.69571 -11.48008 -10.92764 -10.85557 -10.09091 -10.02297 -9.63354 -8.99946 -7.95506 -5.24548 -0.11492 -0.00827 1.47590 1.49468 1.57966 1.69489 2.20562 2.40015 2.56147 2.83746 3.37675 3.38193 3.52231 3.57896 3.66163 3.87401 3.91635 4.00118 4.07412 4.12821 4.20904 4.27157 4.31993 4.42995 4.60116 4.62719 4.68923 4.72059 4.83120 4.83329 4.88865 4.90582 4.92389 4.94775 5.02482 5.06444 5.14310 5.14725 5.29208 5.32203 5.40320 5.44474 5.51380 5.63699 5.74737 6.27356 6.61526 7.31512 7.32936 8.10247 8.32354 9.28249 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.002065 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.954050 B =13554.775296 C =15904.658822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.111 4.111 6 C 0.149 3.851 7 N -0.750 5.750 8 C -0.247 4.247 9 H 0.076 0.924 10 C -0.078 4.078 11 N -0.970 5.970 12 Si 0.975 3.025 13 H -0.285 1.285 14 H -0.295 1.295 15 H -0.269 1.269 16 N -0.715 5.715 17 C 0.511 3.489 18 O -0.585 6.585 19 C -0.131 4.131 20 C -0.059 4.059 21 C -0.125 4.125 22 C -0.055 4.055 23 C -0.155 4.155 24 C 0.113 3.887 25 F -0.139 7.139 26 C -0.192 4.192 27 C 0.119 3.881 28 F -0.137 7.137 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.018 0.982 37 H 0.025 0.975 38 H 0.372 0.628 39 H 0.252 0.748 40 H 0.413 0.587 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.230 -1.606 -21.650 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.148 4.148 5 C -0.149 4.149 6 C 0.023 3.977 7 N -0.393 5.393 8 C -0.379 4.379 9 H 0.094 0.906 10 C -0.270 4.270 11 N -0.621 5.621 12 Si 0.803 3.197 13 H -0.212 1.212 14 H -0.222 1.222 15 H -0.194 1.194 16 N -0.367 5.367 17 C 0.299 3.701 18 O -0.466 6.466 19 C -0.171 4.171 20 C -0.097 4.097 21 C -0.126 4.126 22 C -0.073 4.073 23 C -0.173 4.173 24 C 0.093 3.907 25 F -0.117 7.117 26 C -0.212 4.212 27 C 0.099 3.901 28 F -0.115 7.115 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.204 0.796 39 H 0.060 0.940 40 H 0.249 0.751 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.183 0.817 46 H 0.181 0.819 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.489 -0.903 -21.525 26.534 hybrid contribution 0.807 -0.599 0.243 1.034 sum -14.683 -1.502 -21.282 25.899 Atomic orbital electron populations 1.22095 0.94101 1.02900 1.02182 1.20931 0.94571 0.96542 0.84121 0.91853 1.21746 0.93671 1.02171 0.97182 1.21579 0.96357 0.99663 0.97339 1.20863 0.83161 0.97410 0.96268 1.42646 1.02527 1.65898 1.28190 1.19669 0.90015 1.26382 1.01822 0.90588 1.25610 0.97529 1.02446 1.01446 1.69819 1.07085 1.48767 1.36460 0.85120 0.77855 0.77555 0.79120 1.21168 1.22204 1.19427 1.46109 1.66651 1.14721 1.09265 1.21066 0.76601 0.86902 0.85497 1.90684 1.52140 1.17904 1.85823 1.21668 1.04846 0.99468 0.91095 1.20171 1.02680 0.97097 0.89768 1.20050 0.94151 1.00447 0.97978 1.21125 0.93902 0.96613 0.95618 1.21504 1.01597 0.98856 0.95370 1.17485 0.92112 0.95933 0.85139 1.91525 1.89499 1.80024 1.50688 1.21133 0.95926 1.04995 0.99119 1.17279 0.78132 0.99493 0.95171 1.91514 1.32821 1.94732 1.92442 0.90981 0.90550 0.93844 0.89424 0.89434 0.92066 0.93610 0.96428 0.95661 0.79631 0.93971 0.75061 0.87323 0.86638 0.89528 0.91130 0.81713 0.81950 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.48 71.98 0.68 -2.08 16 2 C 0.14 3.00 2.57 44.99 0.12 3.11 16 3 H 0.06 1.68 7.58 -2.39 -0.02 1.66 16 4 C -0.11 -2.27 4.75 30.59 0.15 -2.13 16 5 C -0.11 -3.31 5.22 30.59 0.16 -3.15 16 6 C 0.15 5.72 6.26 86.38 0.54 6.26 16 7 N -0.75 -38.28 5.60 -343.46 -1.92 -40.20 16 8 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 9 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 10 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 11 N -0.97 -59.54 13.06 21.65 0.28 -59.26 16 12 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 16 N -0.72 -13.68 4.53 -442.53 -2.00 -15.69 16 17 C 0.51 11.32 7.79 87.66 0.68 12.01 16 18 O -0.59 -17.80 15.64 -3.04 -0.05 -17.84 16 19 C -0.13 -2.02 5.68 29.85 0.17 -1.85 16 20 C -0.06 -0.99 4.41 29.85 0.13 -0.86 16 21 C -0.13 -1.84 5.14 -19.81 -0.10 -1.94 16 22 C -0.05 -0.65 9.68 22.26 0.22 -0.43 16 23 C -0.15 -1.83 10.02 22.32 0.22 -1.60 16 24 C 0.11 1.64 7.30 22.37 0.16 1.80 16 25 F -0.14 -2.26 17.27 44.97 0.78 -1.49 16 26 C -0.19 -2.78 10.01 22.36 0.22 -2.56 16 27 C 0.12 1.90 7.24 22.37 0.16 2.06 16 28 F -0.14 -2.49 16.56 44.97 0.74 -1.74 16 29 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.81 7.75 -2.38 -0.02 1.79 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.37 20.27 7.67 -92.70 -0.71 19.55 16 39 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 40 H 0.41 5.94 8.60 -92.71 -0.80 5.15 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 44 H 0.07 1.39 7.75 -2.38 -0.02 1.37 16 45 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 46 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -72.08 403.68 4.16 -67.92 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.52 Total: 28.76 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.82 Total: -8.40 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -3.65 Total: -115.15 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.05 Total: -17.84 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 1.52 Total: -3.23 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -72.08 4.16 -67.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717690608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.669 kcal (2) G-P(sol) polarization free energy of solvation -72.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds