Wall clock time and date at job start Tue Mar 31 2020 23:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47332 * 2 1 4 4 C 1.50701 * 109.47238 * 120.00386 * 2 1 3 5 5 O 1.21271 * 120.00412 * 119.99847 * 4 2 1 6 6 N 1.34777 * 119.99528 * 299.99822 * 4 2 1 7 7 C 1.46502 * 120.00269 * 0.02562 * 6 4 2 8 8 C 1.46500 * 120.00129 * 179.97438 * 6 4 2 9 9 C 1.53006 * 109.46815 * 89.99903 * 8 6 4 10 10 C 1.53009 * 109.46713 * 180.02562 * 9 8 6 11 11 N 1.46503 * 109.46580 * 180.02562 * 10 9 8 12 12 C 1.46499 * 119.99995 * 90.00140 * 11 10 9 13 13 C 1.36937 * 119.99598 * 269.99756 * 11 10 9 14 14 H 1.07993 * 120.00560 * 23.04798 * 13 11 10 15 15 C 1.38813 * 119.99468 * 203.04507 * 13 11 10 16 16 N 1.31617 * 120.00372 * 12.94302 * 15 13 11 17 17 Si 1.86803 * 119.99906 * 192.93906 * 15 13 11 18 18 H 1.48497 * 109.46885 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47119 * 120.00228 * 17 15 13 20 20 H 1.48504 * 109.47154 * 240.00312 * 17 15 13 21 21 C 1.50701 * 109.47088 * 239.99986 * 2 1 3 22 22 C 1.38423 * 120.02259 * 119.99997 * 21 2 1 23 23 F 1.35094 * 120.01521 * 0.04648 * 22 21 2 24 24 C 1.38472 * 119.97294 * 180.02562 * 22 21 2 25 25 C 1.38216 * 120.02660 * 0.02562 * 24 22 21 26 26 C 1.38209 * 120.05012 * 359.97438 * 25 24 22 27 27 C 1.38417 * 120.02751 * 300.02376 * 21 2 1 28 28 F 1.35098 * 120.01098 * 359.97438 * 27 21 2 29 29 H 1.09000 * 109.47332 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47309 * 300.00124 * 1 2 3 31 31 H 1.09003 * 109.47327 * 59.99529 * 1 2 3 32 32 H 1.08996 * 109.47501 * 89.99654 * 7 6 4 33 33 H 1.08996 * 109.47017 * 209.99979 * 7 6 4 34 34 H 1.08999 * 109.47058 * 329.99528 * 7 6 4 35 35 H 1.08995 * 109.47866 * 210.00257 * 8 6 4 36 36 H 1.09004 * 109.47001 * 330.00201 * 8 6 4 37 37 H 1.09000 * 109.47392 * 300.00069 * 9 8 6 38 38 H 1.08995 * 109.47061 * 60.00442 * 9 8 6 39 39 H 1.09000 * 109.46967 * 299.99986 * 10 9 8 40 40 H 1.08996 * 109.46866 * 60.00566 * 10 9 8 41 41 H 1.09003 * 109.46947 * 95.11853 * 12 11 10 42 42 H 1.08995 * 109.47010 * 215.12128 * 12 11 10 43 43 H 1.09002 * 109.47114 * 335.11908 * 12 11 10 44 44 H 0.97002 * 120.00708 * 179.97438 * 16 15 13 45 45 H 1.07995 * 119.99073 * 179.97438 * 24 22 21 46 46 H 1.07999 * 119.97458 * 179.71793 * 25 24 22 47 47 H 1.07996 * 119.99002 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4545 7 6 0.8640 0.9408 2.5890 8 6 2.1945 -0.9409 3.6507 9 6 3.5426 -0.3490 4.0674 10 6 4.0523 -1.0711 5.3163 11 7 5.3428 -0.5040 5.7156 12 6 5.3897 0.6249 6.6481 13 6 6.5051 -1.0291 5.2171 14 1 6.4945 -1.5781 4.2872 15 6 7.6970 -0.8558 5.9072 16 7 7.6812 -0.4181 7.1484 17 14 9.3234 -1.2438 5.0743 18 1 9.0700 -1.7158 3.6894 19 1 10.1632 -0.0198 5.0338 20 1 10.0299 -2.3038 5.8376 21 6 2.0323 -0.7104 -1.2305 22 6 2.8281 -0.0382 -2.1419 23 9 3.1557 1.2550 -1.9285 24 6 3.2887 -0.6918 -3.2725 25 6 2.9536 -2.0147 -3.4913 26 6 2.1591 -2.6869 -2.5819 27 6 1.6978 -2.0355 -1.4503 28 9 0.9212 -2.6928 -0.5615 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.1838 0.6426 2.6225 33 1 1.1217 1.4664 3.5084 34 1 1.0272 1.5996 1.7360 35 1 1.4766 -0.8154 4.4611 36 1 2.3153 -2.0022 3.4334 37 1 4.2606 -0.4746 3.2570 38 1 3.4218 0.7122 4.2846 39 1 3.3344 -0.9459 6.1269 40 1 4.1732 -2.1322 5.0986 41 1 5.5360 0.2527 7.6621 42 1 6.2158 1.2835 6.3801 43 1 4.4522 1.1785 6.5960 44 1 8.5140 -0.2973 7.6308 45 1 3.9093 -0.1674 -3.9840 46 1 3.3095 -2.5223 -4.3756 47 1 1.8975 -3.7205 -2.7540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755039126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:24 Heat of formation + Delta-G solvation = -70.064322 kcal Electronic energy + Delta-G solvation = -30287.312435 eV Core-core repulsion = 25914.391349 eV Total energy + Delta-G solvation = -4372.921086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.26008 -49.11422 -40.32859 -38.83284 -36.27471 -35.36232 -34.61288 -32.20336 -30.53772 -30.39743 -29.47032 -27.10192 -26.02530 -25.60207 -24.51541 -23.10994 -22.77420 -21.51921 -20.15150 -19.24294 -18.33626 -17.88379 -16.72550 -16.69317 -16.45258 -16.03117 -15.80322 -15.72235 -15.46323 -15.26103 -14.75339 -14.62961 -14.22361 -14.17836 -13.84858 -13.56254 -13.28612 -12.99828 -12.95647 -12.70932 -12.57406 -12.49407 -12.36458 -12.15601 -12.04457 -11.70850 -11.59887 -11.24525 -11.11907 -10.89412 -10.75970 -10.65834 -10.38691 -10.08359 -9.79897 -9.70504 -9.67061 -9.12884 -8.95735 -8.63744 -8.41936 -6.64084 -5.63965 -3.10094 0.69607 0.76179 2.67334 2.92777 3.18896 3.43578 3.50580 3.54683 3.67609 4.02924 4.16259 4.29019 4.49828 4.55107 4.58552 4.80985 4.88077 4.90724 5.00995 5.18690 5.26794 5.37677 5.44108 5.48005 5.49025 5.53733 5.55083 5.63376 5.70325 5.74308 5.84863 5.88019 5.89157 6.08495 6.13590 6.22294 6.50422 6.52009 6.68074 6.79967 6.90620 7.10111 7.40634 7.44287 7.79062 7.90770 8.22241 8.49300 9.33292 9.96830 10.45531 11.40973 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.002976 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.526941 B = 9404.969528 C =10542.542527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.071 4.071 3 H 0.112 0.888 4 C 0.519 3.481 5 O -0.523 6.523 6 N -0.612 5.612 7 C 0.074 3.926 8 C 0.117 3.883 9 C -0.150 4.150 10 C 0.156 3.844 11 N -0.604 5.604 12 C 0.164 3.836 13 C -0.250 4.250 14 H 0.068 0.932 15 C 0.000 4.000 16 N -0.910 5.910 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.290 1.290 21 C -0.139 4.139 22 C 0.135 3.865 23 F -0.130 7.130 24 C -0.168 4.168 25 C -0.061 4.061 26 C -0.168 4.168 27 C 0.163 3.837 28 F -0.122 7.122 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.034 0.966 40 H 0.047 0.953 41 H 0.030 0.970 42 H 0.039 0.961 43 H -0.004 1.004 44 H 0.250 0.750 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.038 2.156 -20.328 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.092 4.092 3 H 0.130 0.870 4 C 0.305 3.695 5 O -0.398 6.398 6 N -0.345 5.345 7 C -0.069 4.069 8 C -0.005 4.005 9 C -0.192 4.192 10 C 0.028 3.972 11 N -0.326 5.326 12 C 0.019 3.981 13 C -0.379 4.379 14 H 0.086 0.914 15 C -0.198 4.198 16 N -0.556 5.556 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.217 1.217 21 C -0.142 4.142 22 C 0.116 3.884 23 F -0.108 7.108 24 C -0.187 4.187 25 C -0.079 4.079 26 C -0.187 4.187 27 C 0.144 3.856 28 F -0.100 7.100 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.014 0.986 44 H 0.061 0.939 45 H 0.160 0.840 46 H 0.161 0.839 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.537 1.685 -20.187 27.458 hybrid contribution 0.991 0.166 -0.120 1.012 sum -17.545 1.851 -20.307 26.901 Atomic orbital electron populations 1.22123 0.91561 1.04076 1.03769 1.20141 0.98256 1.00675 0.90149 0.87040 1.20210 0.80431 0.84693 0.84156 1.90737 1.37002 1.26001 1.86098 1.47822 1.51288 1.29274 1.06095 1.21971 0.94214 0.87409 1.03288 1.21603 0.96229 0.97671 0.84995 1.22606 0.95039 1.00189 1.01351 1.20623 0.87870 0.95979 0.92740 1.43892 1.00773 1.34983 1.52974 1.20767 0.95029 0.88471 0.93813 1.19262 0.85382 1.30822 1.02477 0.91436 1.25004 0.98346 1.01188 0.95265 1.70078 1.25405 1.51300 1.08803 0.86211 0.84127 0.77518 0.78948 1.20285 1.21676 1.21713 1.19358 1.02848 0.94255 0.97690 1.17156 0.96995 0.79148 0.95106 1.91513 1.90697 1.33874 1.94720 1.21146 1.03700 0.96067 0.97765 1.20836 0.95243 0.93161 0.98699 1.21202 1.01510 1.01612 0.94388 1.17064 0.91965 0.88999 0.87619 1.91511 1.71411 1.80274 1.66814 0.91182 0.90100 0.91316 0.92259 0.90630 0.91120 0.90891 0.90003 0.91854 0.92944 0.94764 0.93456 0.95134 0.94261 0.98578 0.93935 0.83967 0.83931 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.62 37.16 0.32 -1.04 16 2 C -0.07 -0.82 1.99 -92.93 -0.18 -1.01 16 3 H 0.11 1.19 6.39 -51.93 -0.33 0.86 16 4 C 0.52 7.85 6.52 -10.98 -0.07 7.78 16 5 O -0.52 -10.09 14.14 5.57 0.08 -10.01 16 6 N -0.61 -8.22 2.87 -181.57 -0.52 -8.74 16 7 C 0.07 0.67 8.80 59.85 0.53 1.19 16 8 C 0.12 1.77 5.41 -4.04 -0.02 1.75 16 9 C -0.15 -2.82 5.86 -26.72 -0.16 -2.98 16 10 C 0.16 3.36 5.64 -4.04 -0.02 3.34 16 11 N -0.60 -16.05 2.92 -181.12 -0.53 -16.57 16 12 C 0.16 4.21 8.98 59.85 0.54 4.74 16 13 C -0.25 -7.30 9.65 -15.06 -0.15 -7.44 16 14 H 0.07 1.98 7.86 -52.49 -0.41 1.57 16 15 C 0.00 -0.01 5.10 -17.43 -0.09 -0.10 16 16 N -0.91 -27.61 10.71 55.49 0.59 -27.01 16 17 Si 0.90 22.99 29.57 -169.99 -5.03 17.96 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 C -0.14 -1.71 4.41 -104.49 -0.46 -2.17 16 22 C 0.14 1.54 7.25 -39.43 -0.29 1.26 16 23 F -0.13 -1.53 16.19 2.25 0.04 -1.49 16 24 C -0.17 -1.51 10.03 -39.50 -0.40 -1.91 16 25 C -0.06 -0.49 10.04 -39.60 -0.40 -0.88 16 26 C -0.17 -1.61 10.03 -39.50 -0.40 -2.01 16 27 C 0.16 2.00 6.13 -39.43 -0.24 1.76 16 28 F -0.12 -1.65 13.81 2.25 0.03 -1.62 16 29 H 0.07 0.68 6.31 -51.93 -0.33 0.35 16 30 H 0.08 0.56 4.53 -51.93 -0.24 0.32 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.41 6.95 -51.93 -0.36 0.05 16 33 H 0.07 0.65 8.07 -51.93 -0.42 0.24 16 34 H 0.07 0.54 6.01 -51.93 -0.31 0.22 16 35 H 0.07 0.91 8.07 -51.93 -0.42 0.50 16 36 H 0.08 1.37 7.42 -51.93 -0.39 0.98 16 37 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 40 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 41 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 42 H 0.04 1.08 7.34 -51.93 -0.38 0.69 16 43 H 0.00 -0.10 8.03 -51.93 -0.42 -0.51 16 44 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 47 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -35.46 383.33 -7.94 -43.40 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -6.89 Total: -3.95 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.49 Total: 2.27 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.46 Total: -52.33 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.07 Total: -3.11 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.03 Total: 17.96 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.46 -7.94 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755039126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.669 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds