Wall clock time and date at job start Tue Mar 31 2020 23:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47332 * 2 1 4 4 C 1.50701 * 109.47238 * 120.00386 * 2 1 3 5 5 O 1.21271 * 120.00412 * 119.99847 * 4 2 1 6 6 N 1.34777 * 119.99528 * 299.99822 * 4 2 1 7 7 C 1.46502 * 120.00269 * 0.02562 * 6 4 2 8 8 C 1.46500 * 120.00129 * 179.97438 * 6 4 2 9 9 C 1.53006 * 109.46815 * 89.99903 * 8 6 4 10 10 C 1.53009 * 109.46713 * 180.02562 * 9 8 6 11 11 N 1.46503 * 109.46580 * 180.02562 * 10 9 8 12 12 C 1.46499 * 119.99995 * 90.00140 * 11 10 9 13 13 C 1.36937 * 119.99598 * 269.99756 * 11 10 9 14 14 H 1.07993 * 120.00560 * 23.04798 * 13 11 10 15 15 C 1.38813 * 119.99468 * 203.04507 * 13 11 10 16 16 N 1.31617 * 120.00372 * 12.94302 * 15 13 11 17 17 Si 1.86803 * 119.99906 * 192.93906 * 15 13 11 18 18 H 1.48497 * 109.46885 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47119 * 120.00228 * 17 15 13 20 20 H 1.48504 * 109.47154 * 240.00312 * 17 15 13 21 21 C 1.50701 * 109.47088 * 239.99986 * 2 1 3 22 22 C 1.38423 * 120.02259 * 119.99997 * 21 2 1 23 23 F 1.35094 * 120.01521 * 0.04648 * 22 21 2 24 24 C 1.38472 * 119.97294 * 180.02562 * 22 21 2 25 25 C 1.38216 * 120.02660 * 0.02562 * 24 22 21 26 26 C 1.38209 * 120.05012 * 359.97438 * 25 24 22 27 27 C 1.38417 * 120.02751 * 300.02376 * 21 2 1 28 28 F 1.35098 * 120.01098 * 359.97438 * 27 21 2 29 29 H 1.09000 * 109.47332 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47309 * 300.00124 * 1 2 3 31 31 H 1.09003 * 109.47327 * 59.99529 * 1 2 3 32 32 H 1.08996 * 109.47501 * 89.99654 * 7 6 4 33 33 H 1.08996 * 109.47017 * 209.99979 * 7 6 4 34 34 H 1.08999 * 109.47058 * 329.99528 * 7 6 4 35 35 H 1.08995 * 109.47866 * 210.00257 * 8 6 4 36 36 H 1.09004 * 109.47001 * 330.00201 * 8 6 4 37 37 H 1.09000 * 109.47392 * 300.00069 * 9 8 6 38 38 H 1.08995 * 109.47061 * 60.00442 * 9 8 6 39 39 H 1.09000 * 109.46967 * 299.99986 * 10 9 8 40 40 H 1.08996 * 109.46866 * 60.00566 * 10 9 8 41 41 H 1.09003 * 109.46947 * 95.11853 * 12 11 10 42 42 H 1.08995 * 109.47010 * 215.12128 * 12 11 10 43 43 H 1.09002 * 109.47114 * 335.11908 * 12 11 10 44 44 H 0.97002 * 120.00708 * 179.97438 * 16 15 13 45 45 H 1.07995 * 119.99073 * 179.97438 * 24 22 21 46 46 H 1.07999 * 119.97458 * 179.71793 * 25 24 22 47 47 H 1.07996 * 119.99002 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4545 7 6 0.8640 0.9408 2.5890 8 6 2.1945 -0.9409 3.6507 9 6 3.5426 -0.3490 4.0674 10 6 4.0523 -1.0711 5.3163 11 7 5.3428 -0.5040 5.7156 12 6 5.3897 0.6249 6.6481 13 6 6.5051 -1.0291 5.2171 14 1 6.4945 -1.5781 4.2872 15 6 7.6970 -0.8558 5.9072 16 7 7.6812 -0.4181 7.1484 17 14 9.3234 -1.2438 5.0743 18 1 9.0700 -1.7158 3.6894 19 1 10.1632 -0.0198 5.0338 20 1 10.0299 -2.3038 5.8376 21 6 2.0323 -0.7104 -1.2305 22 6 2.8281 -0.0382 -2.1419 23 9 3.1557 1.2550 -1.9285 24 6 3.2887 -0.6918 -3.2725 25 6 2.9536 -2.0147 -3.4913 26 6 2.1591 -2.6869 -2.5819 27 6 1.6978 -2.0355 -1.4503 28 9 0.9212 -2.6928 -0.5615 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.1838 0.6426 2.6225 33 1 1.1217 1.4664 3.5084 34 1 1.0272 1.5996 1.7360 35 1 1.4766 -0.8154 4.4611 36 1 2.3153 -2.0022 3.4334 37 1 4.2606 -0.4746 3.2570 38 1 3.4218 0.7122 4.2846 39 1 3.3344 -0.9459 6.1269 40 1 4.1732 -2.1322 5.0986 41 1 5.5360 0.2527 7.6621 42 1 6.2158 1.2835 6.3801 43 1 4.4522 1.1785 6.5960 44 1 8.5140 -0.2973 7.6308 45 1 3.9093 -0.1674 -3.9840 46 1 3.3095 -2.5223 -4.3756 47 1 1.8975 -3.7205 -2.7540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755039126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:23 Heat of formation + Delta-G solvation = -90.717141 kcal Electronic energy + Delta-G solvation = -30288.208008 eV Core-core repulsion = 25914.391349 eV Total energy + Delta-G solvation = -4373.816659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.10477 -50.02069 -41.37782 -39.64962 -37.97276 -36.77495 -35.60207 -33.97459 -32.05016 -31.27672 -30.45390 -28.12487 -27.92413 -27.17298 -25.49350 -24.19546 -23.88384 -22.72124 -21.93603 -20.28316 -19.15695 -18.85694 -18.69720 -17.64127 -17.58361 -16.96446 -16.89996 -16.68447 -16.58748 -16.36140 -16.15854 -15.84370 -15.52047 -15.39391 -14.95589 -14.89480 -14.63441 -14.39220 -14.31355 -13.79494 -13.63721 -13.49685 -13.31204 -13.11287 -12.97819 -12.91452 -12.80218 -12.75530 -12.56455 -12.52196 -12.45259 -12.27716 -12.11256 -11.91061 -11.87873 -11.45983 -10.85754 -10.68988 -9.92390 -9.74144 -9.70292 -8.78349 -7.86999 -5.36120 -0.06563 -0.00956 1.40016 1.40787 1.52521 1.55661 1.95829 2.38841 2.47040 2.89377 3.21720 3.24830 3.36988 3.47287 3.66305 3.73504 3.85541 4.03077 4.05868 4.16145 4.21969 4.26983 4.33915 4.49650 4.56928 4.60181 4.70736 4.71669 4.73375 4.79948 4.83587 4.85760 4.90428 4.90928 5.00887 5.05076 5.18580 5.19457 5.22906 5.24442 5.46113 5.55822 5.58962 5.68237 5.77019 6.29845 6.34936 7.11230 7.12597 7.85203 8.26734 9.15500 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.002976 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.526941 B = 9404.969528 C =10542.542527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.067 4.067 3 H 0.119 0.881 4 C 0.509 3.491 5 O -0.576 6.576 6 N -0.612 5.612 7 C 0.064 3.936 8 C 0.126 3.874 9 C -0.129 4.129 10 C 0.153 3.847 11 N -0.623 5.623 12 C 0.177 3.823 13 C -0.264 4.264 14 H 0.056 0.944 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.965 3.035 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.160 4.160 22 C 0.113 3.887 23 F -0.137 7.137 24 C -0.164 4.164 25 C -0.052 4.052 26 C -0.170 4.170 27 C 0.133 3.867 28 F -0.138 7.138 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.019 0.981 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.007 0.993 42 H 0.011 0.989 43 H 0.036 0.964 44 H 0.250 0.750 45 H 0.168 0.832 46 H 0.183 0.817 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.330 2.900 -21.945 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 H 0.137 0.863 4 C 0.297 3.703 5 O -0.455 6.455 6 N -0.344 5.344 7 C -0.077 4.077 8 C 0.003 3.997 9 C -0.170 4.170 10 C 0.027 3.973 11 N -0.346 5.346 12 C 0.032 3.968 13 C -0.395 4.395 14 H 0.074 0.926 15 C -0.245 4.245 16 N -0.582 5.582 17 Si 0.793 3.207 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.212 1.212 21 C -0.162 4.162 22 C 0.093 3.907 23 F -0.116 7.116 24 C -0.183 4.183 25 C -0.069 4.069 26 C -0.189 4.189 27 C 0.113 3.887 28 F -0.116 7.116 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.026 0.974 42 H 0.030 0.970 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.185 0.815 46 H 0.200 0.800 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.887 2.459 -21.811 29.618 hybrid contribution 1.355 -0.078 0.346 1.401 sum -18.532 2.380 -21.464 28.457 Atomic orbital electron populations 1.22118 0.89240 1.03766 1.05616 1.20175 1.00096 1.00220 0.88275 0.86280 1.20929 0.79603 0.84240 0.85525 1.90699 1.39417 1.28444 1.86972 1.47929 1.51164 1.30230 1.05034 1.22322 0.94902 0.85953 1.04511 1.21391 0.95146 0.96340 0.86845 1.22281 0.95967 1.00419 0.98317 1.20790 0.86569 0.95285 0.94655 1.44159 1.01767 1.35561 1.53140 1.20544 0.95951 0.88011 0.92246 1.19429 0.87005 1.30806 1.02242 0.92635 1.25732 1.01362 1.01514 0.95912 1.70216 1.26011 1.52207 1.09811 0.85243 0.80125 0.77373 0.77981 1.20046 1.21164 1.21184 1.19546 1.03666 0.94711 0.98262 1.17448 0.97841 0.79176 0.96203 1.91485 1.90854 1.34338 1.94896 1.21550 1.02989 0.96566 0.97149 1.21308 0.93712 0.92678 0.99232 1.21573 1.01059 1.02579 0.93682 1.17445 0.93167 0.89483 0.88566 1.91461 1.72002 1.80555 1.67587 0.92520 0.88108 0.89557 0.89449 0.89729 0.89582 0.87218 0.92230 0.96177 0.92111 0.91908 0.94914 0.97445 0.96979 0.94562 0.94089 0.81461 0.79991 0.82154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.62 71.98 0.62 -1.75 16 2 C -0.07 -1.52 1.99 -12.29 -0.02 -1.55 16 3 H 0.12 2.46 6.39 -2.39 -0.02 2.44 16 4 C 0.51 15.58 6.52 87.66 0.57 16.15 16 5 O -0.58 -23.32 14.14 -3.00 -0.04 -23.36 16 6 N -0.61 -15.82 2.87 -846.76 -2.43 -18.25 16 7 C 0.06 0.97 8.80 127.77 1.12 2.09 16 8 C 0.13 3.70 5.41 86.38 0.47 4.16 16 9 C -0.13 -4.82 5.86 30.60 0.18 -4.64 16 10 C 0.15 6.60 5.64 86.38 0.49 7.09 16 11 N -0.62 -33.45 2.92 -726.92 -2.12 -35.57 16 12 C 0.18 9.10 8.98 127.77 1.15 10.24 16 13 C -0.26 -15.80 9.65 84.03 0.81 -14.99 16 14 H 0.06 3.38 7.86 -2.91 -0.02 3.35 16 15 C -0.05 -2.98 5.10 84.86 0.43 -2.55 16 16 N -0.94 -57.59 10.71 21.65 0.23 -57.36 16 17 Si 0.96 47.98 29.57 68.60 2.03 50.01 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 21 C -0.16 -3.94 4.41 -19.78 -0.09 -4.03 16 22 C 0.11 2.51 7.25 22.37 0.16 2.67 16 23 F -0.14 -3.19 16.19 44.97 0.73 -2.46 16 24 C -0.16 -2.65 10.03 22.32 0.22 -2.43 16 25 C -0.05 -0.69 10.04 22.26 0.22 -0.47 16 26 C -0.17 -3.08 10.03 22.32 0.22 -2.86 16 27 C 0.13 3.29 6.13 22.37 0.14 3.43 16 28 F -0.14 -3.88 13.81 44.97 0.62 -3.26 16 29 H 0.06 1.07 6.31 -2.39 -0.02 1.05 16 30 H 0.10 1.12 4.53 -2.38 -0.01 1.11 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 0.87 6.95 -2.39 -0.02 0.86 16 33 H 0.08 1.17 8.07 -2.39 -0.02 1.15 16 34 H 0.09 1.06 6.01 -2.39 -0.01 1.04 16 35 H 0.11 2.43 8.07 -2.39 -0.02 2.41 16 36 H 0.06 2.03 7.42 -2.38 -0.02 2.02 16 37 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 2.34 8.07 -2.39 -0.02 2.32 16 40 H 0.03 1.48 8.04 -2.39 -0.02 1.46 16 41 H 0.01 0.41 7.34 -2.39 -0.02 0.39 16 42 H 0.01 0.64 7.34 -2.39 -0.02 0.63 16 43 H 0.04 1.53 8.03 -2.39 -0.02 1.51 16 44 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 46 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 47 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -80.86 383.33 6.69 -74.17 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 0.98 Total: 5.50 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.70 Total: 10.58 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -4.33 Total: -111.18 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.04 Total: -23.36 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 1.35 Total: -5.72 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -80.86 6.69 -74.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755039126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.545 kcal (2) G-P(sol) polarization free energy of solvation -80.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds