Wall clock time and date at job start Tue Mar 31 2020 23:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47786 * 2 1 4 4 C 1.50697 * 109.47258 * 240.00013 * 2 1 3 5 5 O 1.21279 * 120.00415 * 245.46047 * 4 2 1 6 6 N 1.34779 * 120.00206 * 65.45784 * 4 2 1 7 7 C 1.46501 * 119.99597 * 4.98380 * 6 4 2 8 8 C 1.46500 * 120.00607 * 184.98543 * 6 4 2 9 9 C 1.53001 * 109.47112 * 89.99695 * 8 6 4 10 10 C 1.53005 * 109.46903 * 180.02562 * 9 8 6 11 11 N 1.46498 * 109.46869 * 180.02562 * 10 9 8 12 12 C 1.46499 * 119.99782 * 90.00040 * 11 10 9 13 13 C 1.36932 * 120.00248 * 270.00107 * 11 10 9 14 14 H 1.08003 * 119.99569 * 18.98837 * 13 11 10 15 15 C 1.38809 * 120.00393 * 198.98681 * 13 11 10 16 16 N 1.31623 * 119.99399 * 13.11883 * 15 13 11 17 17 Si 1.86794 * 120.00451 * 193.11648 * 15 13 11 18 18 H 1.48502 * 109.47300 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47323 * 120.00086 * 17 15 13 20 20 H 1.48506 * 109.47304 * 240.00505 * 17 15 13 21 21 C 1.50699 * 109.46948 * 120.00409 * 2 1 3 22 22 C 1.38419 * 120.02302 * 239.99900 * 21 2 1 23 23 F 1.35100 * 120.01525 * 359.97438 * 22 21 2 24 24 C 1.38471 * 119.97446 * 179.97438 * 22 21 2 25 25 C 1.38209 * 120.02491 * 0.27446 * 24 22 21 26 26 C 1.38207 * 120.04849 * 359.44772 * 25 24 22 27 27 C 1.38417 * 120.02871 * 59.97594 * 21 2 1 28 28 F 1.35102 * 120.01158 * 0.02562 * 27 21 2 29 29 H 1.08997 * 109.47483 * 188.97003 * 1 2 3 30 30 H 1.08999 * 109.46783 * 308.97134 * 1 2 3 31 31 H 1.09006 * 109.46803 * 68.96627 * 1 2 3 32 32 H 1.09005 * 109.47279 * 95.14911 * 7 6 4 33 33 H 1.09000 * 109.47099 * 215.14636 * 7 6 4 34 34 H 1.09004 * 109.47287 * 335.14895 * 7 6 4 35 35 H 1.09000 * 109.47271 * 210.00485 * 8 6 4 36 36 H 1.09003 * 109.46419 * 329.99845 * 8 6 4 37 37 H 1.09001 * 109.47173 * 300.00491 * 9 8 6 38 38 H 1.08998 * 109.46940 * 60.00563 * 9 8 6 39 39 H 1.08999 * 109.46821 * 300.00424 * 10 9 8 40 40 H 1.09003 * 109.46614 * 60.00158 * 10 9 8 41 41 H 1.09004 * 109.46830 * 94.21980 * 12 11 10 42 42 H 1.08995 * 109.47402 * 214.21767 * 12 11 10 43 43 H 1.08997 * 109.47187 * 334.22225 * 12 11 10 44 44 H 0.97002 * 119.99468 * 179.97438 * 16 15 13 45 45 H 1.08002 * 119.99047 * 179.97438 * 24 22 21 46 46 H 1.08006 * 119.97478 * 179.70627 * 25 24 22 47 47 H 1.08005 * 119.98803 * 180.25437 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6457 -1.7510 -1.1220 6 7 1.7999 -0.1894 -2.4515 7 6 1.1557 1.1203 -2.5785 8 6 2.1914 -0.9326 -3.6518 9 6 1.0345 -1.8300 -4.0959 10 6 1.4436 -2.6067 -5.3491 11 7 0.3356 -3.4654 -5.7747 12 6 -0.6659 -2.9567 -6.7150 13 6 0.2362 -4.7436 -5.2936 14 1 0.7646 -5.0248 -4.3946 15 6 -0.5437 -5.6778 -5.9612 16 7 -0.9758 -5.4249 -7.1785 17 14 -0.9801 -7.2939 -5.1322 18 1 -0.3756 -7.3337 -3.7763 19 1 -2.4562 -7.4100 -5.0202 20 1 -0.4545 -8.4230 -5.9411 21 6 2.0323 -0.7105 1.2304 22 6 2.8281 -0.0383 2.1419 23 9 3.1554 1.2550 1.9287 24 6 3.2886 -0.6920 3.2724 25 6 2.9586 -2.0167 3.4880 26 6 2.1594 -2.6871 2.5814 27 6 1.6978 -2.0356 1.4502 28 9 0.9212 -2.6928 0.5613 29 1 -0.3634 -1.0150 0.1602 30 1 -0.3633 0.6463 0.7990 31 1 -0.3633 0.3689 -0.9593 32 1 1.9186 1.8918 -2.6832 33 1 0.5116 1.1246 -3.4578 34 1 0.5578 1.3189 -1.6891 35 1 2.4346 -0.2315 -4.4501 36 1 3.0637 -1.5474 -3.4299 37 1 0.7913 -2.5311 -3.2975 38 1 0.1622 -1.2151 -4.3177 39 1 1.6871 -1.9057 -6.1475 40 1 2.3158 -3.2215 -5.1268 41 1 -0.3858 -3.2363 -7.7307 42 1 -1.6394 -3.3847 -6.4758 43 1 -0.7177 -1.8707 -6.6384 44 1 -1.5205 -6.0779 -7.6452 45 1 3.9099 -0.1679 3.9836 46 1 3.3222 -2.5271 4.3676 47 1 1.8987 -3.7211 2.7529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755039127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:27 Heat of formation + Delta-G solvation = -66.369793 kcal Electronic energy + Delta-G solvation = -30435.851194 eV Core-core repulsion = 26063.090315 eV Total energy + Delta-G solvation = -4372.760879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.31186 -48.99844 -40.32168 -38.82827 -36.28249 -35.34256 -34.61274 -32.21062 -30.52731 -30.36254 -29.51257 -27.03500 -26.02210 -25.60881 -24.50749 -23.09680 -22.75330 -21.53373 -20.16126 -19.15450 -18.31260 -17.88406 -16.72334 -16.71144 -16.44781 -16.03543 -15.73957 -15.62451 -15.50423 -15.30935 -14.78224 -14.59996 -14.31594 -14.14161 -13.73430 -13.53119 -13.24864 -12.95862 -12.86425 -12.85332 -12.60871 -12.45600 -12.33032 -12.15504 -11.95182 -11.65129 -11.61657 -11.19654 -11.09085 -10.89404 -10.75503 -10.66750 -10.35762 -10.07305 -9.78703 -9.70327 -9.67999 -9.12677 -8.94112 -8.62106 -8.40977 -6.68737 -5.63831 -3.06043 0.68961 0.77358 2.65164 2.94022 3.20507 3.44056 3.51005 3.55013 3.67299 4.04108 4.18445 4.28969 4.49980 4.58047 4.59086 4.82011 4.88007 4.94475 4.98775 5.24155 5.29024 5.40088 5.46657 5.48324 5.49663 5.55195 5.57884 5.63627 5.71769 5.78986 5.85159 5.89159 5.97987 6.08362 6.13419 6.22527 6.51340 6.51728 6.68473 6.81131 6.89916 7.09933 7.41223 7.49783 7.78939 7.91361 8.21870 8.47736 9.33697 9.97597 10.44506 11.41889 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.003019 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.504697 B = 9272.894002 C =10680.121336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.070 4.070 3 H 0.109 0.891 4 C 0.519 3.481 5 O -0.524 6.524 6 N -0.612 5.612 7 C 0.062 3.938 8 C 0.116 3.884 9 C -0.150 4.150 10 C 0.156 3.844 11 N -0.605 5.605 12 C 0.166 3.834 13 C -0.246 4.246 14 H 0.070 0.930 15 C -0.004 4.004 16 N -0.913 5.913 17 Si 0.903 3.097 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.291 1.291 21 C -0.143 4.143 22 C 0.133 3.867 23 F -0.132 7.132 24 C -0.171 4.171 25 C -0.061 4.061 26 C -0.169 4.169 27 C 0.168 3.832 28 F -0.115 7.115 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.034 0.966 40 H 0.046 0.954 41 H 0.025 0.975 42 H 0.047 0.953 43 H -0.007 1.007 44 H 0.250 0.750 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.927 16.649 20.600 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.091 4.091 3 H 0.127 0.873 4 C 0.305 3.695 5 O -0.399 6.399 6 N -0.345 5.345 7 C -0.081 4.081 8 C -0.006 4.006 9 C -0.191 4.191 10 C 0.028 3.972 11 N -0.328 5.328 12 C 0.021 3.979 13 C -0.376 4.376 14 H 0.088 0.912 15 C -0.201 4.201 16 N -0.559 5.559 17 Si 0.733 3.267 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.218 1.218 21 C -0.145 4.145 22 C 0.114 3.886 23 F -0.110 7.110 24 C -0.190 4.190 25 C -0.079 4.079 26 C -0.188 4.188 27 C 0.149 3.851 28 F -0.093 7.093 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.012 0.988 44 H 0.060 0.940 45 H 0.159 0.841 46 H 0.160 0.840 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.131 16.004 20.460 26.689 hybrid contribution -0.434 -0.671 0.088 0.804 sum 5.697 15.333 20.548 26.263 Atomic orbital electron populations 1.22089 0.91313 1.04386 1.03586 1.20141 0.98389 1.00446 0.90156 0.87295 1.20214 0.79708 0.85356 0.84191 1.90729 1.39942 1.23188 1.86070 1.47805 1.60661 1.19944 1.06072 1.22120 0.97983 0.84089 1.03860 1.21599 0.99173 0.94924 0.84885 1.22605 0.96923 0.98408 1.01201 1.20610 0.91192 0.92726 0.92669 1.43932 1.25430 1.11043 1.52370 1.20779 0.93021 0.90926 0.93137 1.19305 1.26741 0.86414 1.05143 0.91236 1.24933 1.01728 0.97863 0.95575 1.70113 1.39936 1.35244 1.10646 0.86192 0.77914 0.83701 0.78900 1.20300 1.21696 1.21790 1.19378 1.03000 0.94315 0.97832 1.17132 0.97325 0.78992 0.95190 1.91496 1.90776 1.34003 1.94763 1.21105 1.04099 0.96041 0.97763 1.20836 0.95249 0.93156 0.98650 1.21260 1.01324 1.01811 0.94377 1.17129 0.91510 0.89002 0.87500 1.91579 1.71072 1.80108 1.66511 0.90790 0.91135 0.90112 0.92620 0.90703 0.89993 0.90956 0.89981 0.91777 0.92918 0.94743 0.93511 0.95621 0.93463 0.98823 0.93971 0.84086 0.83965 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.58 37.16 0.32 -1.26 16 2 C -0.07 -0.81 1.96 -92.93 -0.18 -1.00 16 3 H 0.11 1.06 6.73 -51.93 -0.35 0.71 16 4 C 0.52 7.83 6.53 -10.99 -0.07 7.76 16 5 O -0.52 -10.00 13.82 5.56 0.08 -9.93 16 6 N -0.61 -8.26 2.87 -181.56 -0.52 -8.78 16 7 C 0.06 0.57 9.75 59.85 0.58 1.16 16 8 C 0.12 1.76 5.47 -4.04 -0.02 1.74 16 9 C -0.15 -2.79 5.86 -26.73 -0.16 -2.95 16 10 C 0.16 3.35 5.65 -4.04 -0.02 3.32 16 11 N -0.61 -16.01 2.93 -181.12 -0.53 -16.54 16 12 C 0.17 4.26 8.97 59.85 0.54 4.80 16 13 C -0.25 -7.16 9.70 -15.06 -0.15 -7.31 16 14 H 0.07 2.02 7.86 -52.48 -0.41 1.61 16 15 C 0.00 -0.11 5.11 -17.43 -0.09 -0.20 16 16 N -0.91 -27.61 10.49 55.49 0.58 -27.02 16 17 Si 0.90 22.93 29.57 -169.99 -5.03 17.90 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 21 C -0.14 -1.75 4.46 -104.49 -0.47 -2.21 16 22 C 0.13 1.41 7.25 -39.43 -0.29 1.12 16 23 F -0.13 -1.37 16.19 2.25 0.04 -1.33 16 24 C -0.17 -1.43 10.02 -39.51 -0.40 -1.83 16 25 C -0.06 -0.48 10.04 -39.60 -0.40 -0.87 16 26 C -0.17 -1.71 10.02 -39.51 -0.40 -2.11 16 27 C 0.17 2.20 6.05 -39.43 -0.24 1.96 16 28 F -0.11 -1.82 13.62 2.25 0.03 -1.79 16 29 H 0.07 0.89 6.10 -51.93 -0.32 0.57 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.74 5.37 -51.93 -0.28 0.46 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 34 H 0.08 0.62 4.09 -51.93 -0.21 0.41 16 35 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 36 H 0.08 1.37 7.36 -51.93 -0.38 0.99 16 37 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 40 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 41 H 0.03 0.70 7.50 -51.93 -0.39 0.31 16 42 H 0.05 1.30 7.00 -51.93 -0.36 0.94 16 43 H -0.01 -0.15 8.04 -51.93 -0.42 -0.57 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 45 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 47 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -35.10 383.63 -7.90 -43.00 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -6.89 Total: -3.41 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.43 Total: 2.12 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.47 Total: -52.34 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.13 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.03 Total: 17.90 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.10 -7.90 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755039127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.367 kcal (2) G-P(sol) polarization free energy of solvation -35.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds