Wall clock time and date at job start Wed Apr 1 2020 00:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 116.99737 * 2 1 4 4 O 1.20822 * 120.00263 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99712 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46946 * 179.97438 * 5 3 2 7 7 C 1.36940 * 120.00238 * 263.88451 * 6 5 3 8 8 H 1.07998 * 119.99990 * 209.55437 * 7 6 5 9 9 C 1.38815 * 119.99829 * 29.55884 * 7 6 5 10 10 N 1.31621 * 119.99905 * 352.79684 * 9 7 6 11 11 Si 1.86797 * 119.99836 * 172.79809 * 9 7 6 12 12 H 1.48499 * 109.47234 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47128 * 120.00146 * 11 9 7 14 14 H 1.48500 * 109.46708 * 239.99774 * 11 9 7 15 15 C 1.46497 * 119.99883 * 83.88779 * 6 5 3 16 16 C 1.50700 * 109.47725 * 90.00073 * 15 6 5 17 17 O 1.21288 * 119.99353 * 359.97438 * 16 15 6 18 18 N 1.34770 * 120.00579 * 180.02562 * 16 15 6 19 19 C 1.47388 * 121.36666 * 354.87466 * 18 16 15 20 20 C 1.53170 * 108.87682 * 129.86668 * 19 18 16 21 21 O 1.43181 * 109.83388 * 51.02280 * 20 19 18 22 22 C 1.42562 * 113.51501 * 298.47131 * 21 20 19 23 23 H 1.08999 * 109.31046 * 304.74779 * 22 21 20 24 24 C 1.52693 * 111.40606 * 183.83646 * 22 21 20 25 25 C 1.53202 * 108.89027 * 178.47565 * 24 22 21 26 26 C 1.52887 * 109.98956 * 59.38491 * 25 24 22 27 27 C 1.53195 * 109.98752 * 301.26991 * 26 25 24 28 28 C 1.46594 * 121.33857 * 174.83003 * 18 16 15 29 29 H 1.09006 * 109.69780 * 112.63678 * 28 18 16 30 30 H 1.08997 * 109.47529 * 60.00096 * 1 2 3 31 31 H 1.08997 * 109.46716 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47348 * 299.99750 * 1 2 3 33 33 H 1.09000 * 109.47231 * 60.00017 * 5 3 2 34 34 H 1.09000 * 109.47374 * 300.00025 * 5 3 2 35 35 H 0.96997 * 120.00298 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.47235 * 329.99789 * 15 6 5 37 37 H 1.08999 * 109.47277 * 210.00073 * 15 6 5 38 38 H 1.09000 * 109.56640 * 10.04924 * 19 18 16 39 39 H 1.08994 * 109.57098 * 249.69129 * 19 18 16 40 40 H 1.09005 * 109.41583 * 290.91121 * 20 19 18 41 41 H 1.09004 * 109.41092 * 171.13097 * 20 19 18 42 42 H 1.09005 * 109.56630 * 58.65756 * 24 22 21 43 43 H 1.08991 * 109.66704 * 298.35748 * 24 22 21 44 44 H 1.09011 * 109.38288 * 299.22786 * 25 24 22 45 45 H 1.08997 * 109.38508 * 179.54572 * 25 24 22 46 46 H 1.09001 * 109.38137 * 181.10582 * 26 25 24 47 47 H 1.09001 * 109.29375 * 61.37762 * 26 25 24 48 48 H 1.08994 * 109.56869 * 179.27543 * 27 26 25 49 49 H 1.09004 * 109.56996 * 299.51523 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.2974 3.2999 -1.1796 8 1 5.0198 4.1026 -1.1911 9 6 3.6889 2.8967 -2.3603 10 7 2.9179 1.8300 -2.3724 11 14 3.9642 3.8681 -3.9319 12 1 4.8645 5.0157 -3.6533 13 1 4.5846 2.9887 -4.9551 14 1 2.6618 4.3724 -4.4366 15 6 4.0592 3.4214 1.2609 16 6 5.4404 3.2753 1.8455 17 8 6.2776 2.6162 1.2660 18 7 5.7453 3.8762 3.0127 19 6 4.7892 4.7729 3.6866 20 6 4.6603 4.3482 5.1526 21 8 5.9604 4.2330 5.7411 22 6 6.7819 3.2488 5.1175 23 1 6.2620 2.2908 5.1204 24 6 8.1190 3.0998 5.8397 25 6 8.9374 2.0053 5.1474 26 6 9.1724 2.3757 3.6828 27 6 7.8303 2.5575 2.9668 28 6 7.0412 3.6635 3.6641 29 1 7.6170 4.5889 3.6475 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.9564 0.7807 -0.8891 34 1 3.9557 0.7810 0.8908 35 1 2.4929 1.5480 -3.1975 36 1 3.3244 3.0247 1.9614 37 1 3.8526 4.4755 1.0759 38 1 3.8168 4.7023 3.1992 39 1 5.1521 5.7993 3.6343 40 1 4.1511 3.3860 5.2077 41 1 4.0814 5.0948 5.6965 42 1 7.9435 2.8222 6.8791 43 1 8.6640 4.0429 5.8007 44 1 8.3954 1.0609 5.1993 45 1 9.8976 1.8978 5.6520 46 1 9.7381 1.5818 3.1952 47 1 9.7381 3.3061 3.6330 48 1 8.0057 2.8338 1.9272 49 1 7.2661 1.6257 3.0067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332662194.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:14 Heat of formation + Delta-G solvation = -123.817010 kcal Electronic energy + Delta-G solvation = -32135.506247 eV Core-core repulsion = 27871.341785 eV Total energy + Delta-G solvation = -4264.164462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.67709 -39.01865 -38.21990 -36.70631 -35.75082 -34.57730 -34.36938 -31.57102 -30.63034 -30.29751 -28.66217 -27.82614 -26.45046 -25.91873 -23.62945 -23.14501 -22.16432 -21.41412 -20.15811 -19.80146 -18.77827 -17.04188 -16.86321 -16.47767 -16.08486 -15.92692 -15.53904 -15.34465 -15.15288 -15.05467 -14.77192 -14.71244 -14.01490 -13.72547 -13.66395 -13.47789 -13.20436 -12.89765 -12.70448 -12.45457 -12.29611 -12.18498 -12.06709 -11.45800 -11.34594 -11.33225 -11.19282 -11.06582 -10.97693 -10.85430 -10.76035 -10.53222 -10.43080 -10.39069 -10.21758 -10.07977 -10.06182 -9.67911 -9.21483 -8.70905 -8.46311 -8.19862 -6.94219 -5.95692 -3.41013 3.13968 3.26525 3.35538 3.42269 3.44692 3.56417 3.82356 4.00558 4.43705 4.55536 4.74517 4.82378 4.85763 4.97127 5.12690 5.15737 5.19599 5.22425 5.29395 5.33539 5.40123 5.45277 5.52974 5.61667 5.70852 5.75712 5.77324 5.81826 5.83035 5.92298 5.97287 6.03625 6.05339 6.08628 6.14633 6.22013 6.33235 6.46129 6.56686 6.73134 6.89411 7.06655 7.19485 7.67159 7.73384 7.77786 8.21792 8.83437 9.00196 9.34165 9.63234 10.09345 11.14835 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.003675 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.156630 B = 7616.837806 C = 8468.766274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.380 6.380 3 C 0.469 3.531 4 O -0.516 6.516 5 C 0.194 3.806 6 N -0.544 5.544 7 C -0.251 4.251 8 H 0.075 0.925 9 C 0.015 3.985 10 N -0.909 5.909 11 Si 0.916 3.084 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.288 1.288 15 C 0.134 3.866 16 C 0.487 3.513 17 O -0.510 6.510 18 N -0.627 5.627 19 C 0.076 3.924 20 C 0.048 3.952 21 O -0.379 6.379 22 C 0.078 3.922 23 H 0.058 0.942 24 C -0.106 4.106 25 C -0.117 4.117 26 C -0.127 4.127 27 C -0.111 4.111 28 C 0.120 3.880 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.126 0.874 34 H 0.042 0.958 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.103 0.897 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 0.779 15.863 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.297 6.297 3 C 0.310 3.690 4 O -0.402 6.402 5 C 0.065 3.935 6 N -0.262 5.262 7 C -0.379 4.379 8 H 0.093 0.907 9 C -0.183 4.183 10 N -0.554 5.554 11 Si 0.746 3.254 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.215 1.215 15 C 0.003 3.997 16 C 0.274 3.726 17 O -0.383 6.383 18 N -0.365 5.365 19 C -0.048 4.048 20 C -0.029 4.029 21 O -0.297 6.297 22 C 0.020 3.980 23 H 0.076 0.924 24 C -0.144 4.144 25 C -0.155 4.155 26 C -0.165 4.165 27 C -0.148 4.148 28 C 0.016 3.984 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.144 0.856 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.121 0.879 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.082 0.757 15.458 16.289 hybrid contribution -0.542 0.547 -1.088 1.332 sum 4.540 1.304 14.370 15.126 Atomic orbital electron populations 1.22858 0.79824 1.01387 1.01185 1.86546 1.20905 1.36600 1.85670 1.25451 0.93546 0.80076 0.69891 1.90446 1.66856 1.36506 1.46437 1.20207 0.84820 0.86520 1.01940 1.43258 1.74547 1.06848 1.01518 1.19195 1.18234 1.16216 0.84294 0.90727 1.25096 0.96658 0.97571 0.98998 1.69647 1.34488 1.24212 1.27057 0.86010 0.77285 0.79609 0.82542 1.20211 1.21559 1.21509 1.20750 0.90504 0.98726 0.89730 1.23076 0.92927 0.77913 0.78717 1.90621 1.49127 1.39589 1.58991 1.48487 1.15710 1.48821 1.23471 1.22352 0.94749 0.94296 0.93357 1.22973 0.84911 1.01821 0.93223 1.87891 1.25373 1.59239 1.57236 1.22447 0.92260 0.91323 0.91989 0.92357 1.21429 0.93632 1.00012 0.99300 1.21541 0.99675 0.98182 0.96108 1.21739 0.98333 1.01570 0.94885 1.21999 0.93970 0.97796 1.01050 1.21706 0.85212 0.99484 0.91979 0.91294 0.92917 0.90062 0.93637 0.85628 0.93998 0.93078 0.91483 0.89988 0.88379 0.90940 0.92661 0.87812 0.91100 0.91069 0.91838 0.91518 0.91507 0.92189 0.87914 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.81 16 2 O -0.38 -8.27 10.57 -39.27 -0.41 -8.68 16 3 C 0.47 11.41 6.06 36.00 0.22 11.62 16 4 O -0.52 -13.78 15.87 -18.75 -0.30 -14.08 16 5 C 0.19 4.67 5.48 -5.19 -0.03 4.64 16 6 N -0.54 -13.37 1.52 -175.99 -0.27 -13.63 16 7 C -0.25 -6.77 9.60 -15.06 -0.14 -6.91 16 8 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 9 C 0.01 0.40 5.37 -17.43 -0.09 0.31 16 10 N -0.91 -25.55 8.63 55.49 0.48 -25.07 16 11 Si 0.92 21.95 29.56 -169.99 -5.02 16.92 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 C 0.13 2.69 4.49 -5.20 -0.02 2.66 16 16 C 0.49 9.16 7.66 -10.99 -0.08 9.07 16 17 O -0.51 -11.14 12.38 5.55 0.07 -11.07 16 18 N -0.63 -9.44 3.01 -165.19 -0.50 -9.94 16 19 C 0.08 0.89 6.54 -3.47 -0.02 0.87 16 20 C 0.05 0.50 6.95 37.25 0.26 0.76 16 21 O -0.38 -4.67 10.51 -35.23 -0.37 -5.04 16 22 C 0.08 0.95 2.49 -26.71 -0.07 0.89 16 23 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 24 C -0.11 -1.06 5.69 -26.78 -0.15 -1.21 16 25 C -0.12 -1.11 5.91 -26.68 -0.16 -1.27 16 26 C -0.13 -1.41 5.91 -26.69 -0.16 -1.57 16 27 C -0.11 -1.61 3.73 -26.78 -0.10 -1.71 16 28 C 0.12 1.66 2.82 -67.85 -0.19 1.47 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.04 0.75 8.13 -51.93 -0.42 0.32 16 33 H 0.13 3.33 6.42 -51.93 -0.33 3.00 16 34 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.07 1.24 7.80 -51.93 -0.41 0.84 16 37 H 0.08 1.59 7.74 -51.93 -0.40 1.18 16 38 H 0.10 1.09 6.10 -51.93 -0.32 0.77 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.10 1.81 6.15 -51.93 -0.32 1.49 16 49 H 0.07 1.09 7.60 -51.93 -0.39 0.69 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -32.77 382.65 -8.29 -41.07 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.06 Total: 2.31 kcal Atomic # 6 Polarization: 21.13 SS G_CDS: 0.32 Total: 21.45 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.29 Total: -48.64 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -1.01 Total: -38.87 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.77 -8.29 -41.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332662194.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.752 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds