Wall clock time and date at job start Wed Apr 1 2020 00:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99571 * 2 1 4 4 O 1.20823 * 120.00223 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99626 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46790 * 179.97438 * 5 3 2 7 7 C 1.36935 * 120.00149 * 85.56742 * 6 5 3 8 8 H 1.07999 * 120.00706 * 208.95929 * 7 6 5 9 9 C 1.38814 * 120.00097 * 28.96666 * 7 6 5 10 10 N 1.31614 * 120.00299 * 40.94306 * 9 7 6 11 11 Si 1.86799 * 119.99962 * 220.95330 * 9 7 6 12 12 H 1.48499 * 109.47145 * 269.99608 * 11 9 7 13 13 H 1.48500 * 109.47342 * 29.99322 * 11 9 7 14 14 H 1.48498 * 109.47234 * 149.99170 * 11 9 7 15 15 C 1.46500 * 120.00318 * 265.56476 * 6 5 3 16 16 C 1.50704 * 109.47161 * 270.00677 * 15 6 5 17 17 O 1.21277 * 120.00079 * 359.97438 * 16 15 6 18 18 N 1.34774 * 120.00097 * 179.97438 * 16 15 6 19 19 C 1.47177 * 121.18159 * 359.71679 * 18 16 15 20 20 C 1.53693 * 108.39372 * 129.05975 * 19 18 16 21 21 O 1.43059 * 109.33182 * 52.00011 * 20 19 18 22 22 C 1.42725 * 113.93066 * 298.07910 * 21 20 19 23 23 H 1.08998 * 108.52786 * 304.30967 * 22 21 20 24 24 C 1.52519 * 110.47784 * 184.85083 * 22 21 20 25 25 C 1.52967 * 109.92378 * 297.49867 * 24 22 21 26 26 C 1.53064 * 109.17946 * 300.23355 * 25 24 22 27 27 C 1.52908 * 109.28376 * 60.71329 * 26 25 24 28 28 C 1.47516 * 121.18565 * 179.97438 * 18 16 15 29 29 H 1.08999 * 110.17156 * 352.69631 * 28 18 16 30 30 H 1.09007 * 109.46743 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47129 * 300.00015 * 1 2 3 32 32 H 1.08999 * 109.46938 * 60.00278 * 1 2 3 33 33 H 1.08995 * 109.47463 * 60.00129 * 5 3 2 34 34 H 1.09004 * 109.47231 * 299.99319 * 5 3 2 35 35 H 0.97006 * 119.99845 * 5.86361 * 10 9 7 36 36 H 1.08998 * 109.46761 * 30.00130 * 15 6 5 37 37 H 1.09003 * 109.47553 * 150.00163 * 15 6 5 38 38 H 1.08994 * 109.60475 * 248.86158 * 19 18 16 39 39 H 1.08995 * 109.60786 * 9.37023 * 19 18 16 40 40 H 1.08994 * 109.64161 * 291.97117 * 20 19 18 41 41 H 1.09000 * 109.40461 * 171.88382 * 20 19 18 42 42 H 1.09002 * 109.39652 * 177.36173 * 24 22 21 43 43 H 1.08998 * 109.32133 * 57.58997 * 24 22 21 44 44 H 1.09001 * 109.52141 * 180.31825 * 25 24 22 45 45 H 1.09002 * 109.51785 * 60.13758 * 25 24 22 46 46 H 1.08992 * 109.49994 * 300.76643 * 26 25 24 47 47 H 1.09000 * 109.53289 * 180.67045 * 26 25 24 48 48 H 1.08999 * 109.41480 * 179.29210 * 27 26 25 49 49 H 1.08995 * 109.41984 * 59.48250 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.0873 3.3632 1.1818 8 1 3.9274 4.4310 1.2044 9 6 4.4001 2.6834 2.3510 10 7 5.3108 1.7333 2.3363 11 14 3.5284 3.1170 3.9452 12 1 4.2891 4.1782 4.6525 13 1 2.1594 3.6070 3.6434 14 1 3.4435 1.9106 4.8069 15 6 4.2839 3.3537 -1.2654 16 6 5.7459 3.1831 -1.5886 17 8 6.4647 2.5605 -0.8360 18 7 6.2547 3.7226 -2.7140 19 6 5.4049 4.4779 -3.6486 20 6 6.0823 5.8268 -3.9381 21 8 7.4350 5.5999 -4.3447 22 6 8.2400 4.9671 -3.3504 23 1 8.1995 5.5650 -2.4400 24 6 9.6886 4.8719 -3.8180 25 6 9.7751 4.0016 -5.0730 26 6 9.2467 2.6015 -4.7515 27 6 7.7859 2.7019 -4.3112 28 6 7.6818 3.5722 -3.0556 29 1 8.2190 3.1061 -2.2297 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.9564 0.7807 -0.8891 34 1 3.9557 0.7811 0.8909 35 1 5.8235 1.5654 1.5302 36 1 3.6823 2.9168 -2.0624 37 1 4.0529 4.4152 -1.1759 38 1 5.2914 3.9158 -4.5755 39 1 4.4269 4.6473 -3.1985 40 1 6.0715 6.4426 -3.0388 41 1 5.5439 6.3386 -4.7358 42 1 10.2956 4.4294 -3.0282 43 1 10.0611 5.8710 -4.0440 44 1 10.8133 3.9334 -5.3981 45 1 9.1727 4.4450 -5.8659 46 1 9.8397 2.1645 -3.9482 47 1 9.3168 1.9728 -5.6391 48 1 7.4036 1.7046 -4.0937 49 1 7.1960 3.1485 -5.1116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332662197.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:21 Heat of formation + Delta-G solvation = -134.967521 kcal Electronic energy + Delta-G solvation = -31908.669662 eV Core-core repulsion = 27644.021678 eV Total energy + Delta-G solvation = -4264.647984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.61390 -39.53967 -38.30207 -36.24348 -36.05461 -34.97925 -34.49869 -31.55946 -30.70147 -30.38046 -28.93823 -27.93866 -26.68525 -25.77121 -23.63495 -22.83504 -22.62199 -21.77143 -20.17727 -19.41624 -18.63832 -17.47187 -17.04286 -16.66020 -16.31477 -16.01125 -15.89230 -15.71581 -15.53934 -15.04243 -14.72187 -14.31508 -14.02489 -13.77660 -13.67995 -13.54440 -13.22341 -13.05548 -12.80782 -12.60566 -12.53755 -12.48324 -12.13091 -11.84766 -11.53665 -11.42434 -11.41936 -11.08535 -11.06715 -10.85494 -10.72963 -10.64658 -10.47891 -10.21595 -10.15594 -10.04871 -9.89841 -9.77830 -9.62094 -9.15538 -8.30266 -8.19951 -7.11130 -6.23662 -3.30255 3.11337 3.16254 3.33342 3.42497 3.54066 3.59498 3.64665 3.74106 4.54366 4.57274 4.71041 4.78598 4.87415 4.92795 5.02470 5.09337 5.16156 5.18078 5.24444 5.36563 5.41878 5.43025 5.47170 5.48508 5.53129 5.54087 5.66610 5.69220 5.74021 5.81226 5.88563 5.92078 5.97349 5.97637 6.04682 6.07292 6.10333 6.19158 6.21663 6.35165 6.68194 6.78586 7.10380 7.13382 7.75046 7.94859 8.43493 8.69408 8.88178 8.96111 9.69115 10.03632 11.03637 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013978 B = 0.003438 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.732698 B = 8141.482719 C = 8897.912978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.376 6.376 3 C 0.428 3.572 4 O -0.499 6.499 5 C 0.150 3.850 6 N -0.533 5.533 7 C -0.374 4.374 8 H 0.059 0.941 9 C -0.001 4.001 10 N -0.870 5.870 11 Si 1.040 2.960 12 H -0.291 1.291 13 H -0.289 1.289 14 H -0.284 1.284 15 C 0.134 3.866 16 C 0.483 3.517 17 O -0.508 6.508 18 N -0.629 5.629 19 C 0.076 3.924 20 C 0.048 3.952 21 O -0.374 6.374 22 C 0.085 3.915 23 H 0.057 0.943 24 C -0.108 4.108 25 C -0.115 4.115 26 C -0.117 4.117 27 C -0.121 4.121 28 C 0.115 3.885 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.287 0.713 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 2.689 -15.911 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.293 6.293 3 C 0.268 3.732 4 O -0.385 6.385 5 C 0.020 3.980 6 N -0.250 5.250 7 C -0.501 4.501 8 H 0.077 0.923 9 C -0.209 4.209 10 N -0.505 5.505 11 Si 0.868 3.132 12 H -0.219 1.219 13 H -0.215 1.215 14 H -0.210 1.210 15 C 0.003 3.997 16 C 0.269 3.731 17 O -0.379 6.379 18 N -0.367 5.367 19 C -0.048 4.048 20 C -0.030 4.030 21 O -0.293 6.293 22 C 0.027 3.973 23 H 0.075 0.925 24 C -0.146 4.146 25 C -0.153 4.153 26 C -0.155 4.155 27 C -0.159 4.159 28 C 0.011 3.989 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.621 2.275 -13.983 14.407 hybrid contribution -0.332 0.596 -1.359 1.520 sum 2.289 2.871 -15.341 15.775 Atomic orbital electron populations 1.23045 0.78902 1.02312 1.01724 1.86631 1.21760 1.35877 1.84999 1.26589 0.94329 0.80663 0.71619 1.90541 1.66877 1.36404 1.44630 1.20628 0.84571 0.88480 1.04312 1.43293 1.71106 1.08528 1.02059 1.19597 1.50915 0.94235 0.85374 0.92333 1.25713 0.96008 0.98230 1.00915 1.70679 1.14233 1.34328 1.31305 0.83982 0.76738 0.76205 0.76244 1.21862 1.21490 1.20986 1.21101 0.89198 0.99399 0.90001 1.23170 0.93106 0.77940 0.78874 1.90670 1.60902 1.39349 1.47019 1.48888 1.08536 1.56048 1.23257 1.22374 0.95186 0.92882 0.94312 1.23046 0.83128 0.95837 1.00945 1.87868 1.21006 1.79671 1.40752 1.22193 0.91194 0.92714 0.91225 0.92521 1.21429 0.93503 1.00936 0.98735 1.21481 1.00757 0.95216 0.97822 1.21500 0.95920 0.96971 1.01093 1.21760 0.96919 0.99735 0.97513 1.21808 0.83405 0.95512 0.98145 0.87660 0.89261 0.92574 0.92896 0.90729 0.86890 0.90148 0.91596 0.90237 0.91138 0.88811 0.92617 0.88026 0.90330 0.91048 0.92058 0.91190 0.91874 0.91862 0.91946 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 101.05 1.07 1.59 16 2 O -0.38 -7.28 10.57 -39.25 -0.41 -7.70 16 3 C 0.43 9.56 8.00 36.01 0.29 9.85 16 4 O -0.50 -12.21 16.10 -18.75 -0.30 -12.51 16 5 C 0.15 3.49 5.77 -5.19 -0.03 3.46 16 6 N -0.53 -13.11 1.38 -175.98 -0.24 -13.35 16 7 C -0.37 -10.40 9.17 -15.06 -0.14 -10.54 16 8 H 0.06 1.68 8.06 -52.49 -0.42 1.25 16 9 C 0.00 -0.02 4.51 -17.43 -0.08 -0.10 16 10 N -0.87 -25.82 12.19 55.49 0.68 -25.15 16 11 Si 1.04 25.60 30.06 -169.99 -5.11 20.49 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 C 0.13 2.69 4.50 -5.19 -0.02 2.66 16 16 C 0.48 9.68 7.79 -10.98 -0.09 9.59 16 17 O -0.51 -12.49 15.62 5.56 0.09 -12.40 16 18 N -0.63 -9.79 2.68 -164.25 -0.44 -10.23 16 19 C 0.08 0.90 6.06 -3.31 -0.02 0.88 16 20 C 0.05 0.52 6.99 37.52 0.26 0.78 16 21 O -0.37 -4.60 9.47 -35.23 -0.33 -4.94 16 22 C 0.09 1.08 2.76 -26.92 -0.07 1.01 16 23 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 24 C -0.11 -1.12 5.65 -26.99 -0.15 -1.27 16 25 C -0.12 -1.09 5.83 -26.72 -0.16 -1.25 16 26 C -0.12 -1.19 5.92 -26.75 -0.16 -1.35 16 27 C -0.12 -1.48 5.11 -26.71 -0.14 -1.62 16 28 C 0.12 1.66 2.74 -67.25 -0.18 1.47 16 29 H 0.11 1.79 7.12 -51.93 -0.37 1.42 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 32 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 34 H 0.11 2.94 5.66 -51.93 -0.29 2.64 16 35 H 0.29 8.78 7.79 -40.82 -0.32 8.46 16 36 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16 37 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 38 H 0.07 0.75 7.33 -51.93 -0.38 0.37 16 39 H 0.09 1.05 6.07 -51.93 -0.32 0.73 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.07 0.82 6.71 -51.93 -0.35 0.47 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -34.21 388.50 -7.79 -42.00 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.94 Total: 2.76 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 0.38 Total: 15.18 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.01 Total: -48.74 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.96 Total: -37.55 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.11 Total: 20.49 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.21 -7.79 -42.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332662197.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.968 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds