Wall clock time and date at job start Tue Mar 31 2020 23:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47330 * 2 1 4 4 C 1.34228 * 116.99882 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00065 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00087 * 180.02562 * 4 3 2 7 7 C 1.53071 * 109.44365 * 59.79295 * 6 4 3 8 8 C 1.53192 * 109.29669 * 181.24072 * 7 6 4 9 9 N 1.46926 * 108.89029 * 305.57921 * 8 7 6 10 10 C 1.34779 * 120.62965 * 233.55576 * 9 8 7 11 11 O 1.21345 * 119.99804 * 353.07380 * 10 9 8 12 12 C 1.49450 * 119.99959 * 173.06654 * 10 9 8 13 13 O 1.21357 * 120.00090 * 353.33728 * 12 10 9 14 14 N 1.34774 * 120.00173 * 173.33642 * 12 10 9 15 15 C 1.46501 * 120.00243 * 179.97438 * 14 12 10 16 16 C 1.53006 * 109.47082 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.46913 * 180.02562 * 16 15 14 18 18 C 1.50692 * 109.46976 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00021 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00345 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99476 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00569 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47259 * 89.99427 * 22 20 18 24 24 H 1.48497 * 109.47298 * 209.99853 * 22 20 18 25 25 H 1.48502 * 109.46825 * 329.99546 * 22 20 18 26 26 C 1.46927 * 118.74163 * 53.53736 * 9 8 7 27 27 C 1.53039 * 109.45899 * 180.02562 * 6 4 3 28 28 H 1.08995 * 109.47714 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46726 * 300.00549 * 1 2 3 30 30 H 1.08998 * 109.46437 * 59.99852 * 1 2 3 31 31 H 1.08997 * 109.47086 * 239.99090 * 2 1 3 32 32 H 1.09010 * 109.46376 * 119.99737 * 2 1 3 33 33 H 1.09009 * 109.45335 * 299.97070 * 6 4 3 34 34 H 1.08998 * 109.39068 * 61.36173 * 7 6 4 35 35 H 1.09008 * 109.62009 * 301.25665 * 7 6 4 36 36 H 1.08995 * 109.58780 * 185.72372 * 8 7 6 37 37 H 1.09003 * 109.58422 * 65.43621 * 8 7 6 38 38 H 0.96998 * 119.99905 * 0.02562 * 14 12 10 39 39 H 1.08993 * 109.47511 * 300.00634 * 15 14 12 40 40 H 1.09003 * 109.46282 * 60.00529 * 15 14 12 41 41 H 1.09001 * 109.46957 * 300.00542 * 16 15 14 42 42 H 1.09003 * 109.46858 * 60.00317 * 16 15 14 43 43 H 1.09005 * 109.46845 * 299.99809 * 17 16 15 44 44 H 1.08998 * 109.47189 * 59.99896 * 17 16 15 45 45 H 0.97003 * 119.99726 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.58946 * 66.17446 * 26 9 8 47 47 H 1.08998 * 109.59100 * 186.46270 * 26 9 8 48 48 H 1.08999 * 109.49875 * 58.67382 * 27 6 4 49 49 H 1.09001 * 109.52161 * 298.58857 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0012 7 6 3.4442 3.6854 1.2486 8 6 4.0065 5.1103 1.2302 9 7 5.4670 5.0434 1.0846 10 6 6.2739 5.6761 1.9593 11 8 5.7993 6.4098 2.8013 12 6 7.7532 5.4740 1.8922 13 8 8.2192 4.6504 1.1325 14 7 8.5696 6.2064 2.6754 15 6 10.0197 6.0079 2.6100 16 6 10.7091 6.9564 3.5929 17 6 12.2235 6.7495 3.5242 18 6 12.9025 7.6833 4.4926 19 1 12.3128 8.3572 5.0964 20 6 14.2765 7.6780 4.6072 21 7 14.9944 6.8576 3.8715 22 14 15.1182 8.8350 5.8081 23 1 15.2539 8.1663 7.1271 24 1 16.4646 9.1902 5.2923 25 1 14.3050 10.0683 5.9598 26 6 6.0311 4.2735 -0.0324 27 6 5.4492 2.8568 0.0010 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.5856 3.4693 -0.8892 34 1 3.7980 3.1661 2.1393 35 1 2.3549 3.7242 1.2582 36 1 3.7550 5.6144 2.1632 37 1 3.5804 5.6604 0.3912 38 1 8.1971 6.8645 3.2829 39 1 10.2575 4.9772 2.8728 40 1 10.3694 6.2150 1.5986 41 1 10.4712 7.9873 3.3305 42 1 10.3592 6.7489 4.6042 43 1 12.4616 5.7186 3.7864 44 1 12.5730 6.9572 2.5129 45 1 15.9611 6.8537 3.9523 46 1 5.7699 4.7532 -0.9757 47 1 7.1157 4.2277 0.0662 48 1 5.7844 2.3046 -0.8769 49 1 5.7871 2.3462 0.9029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343157440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:01 Heat of formation + Delta-G solvation = -182.200474 kcal Electronic energy + Delta-G solvation = -29114.353796 eV Core-core repulsion = 24847.657637 eV Total energy + Delta-G solvation = -4266.696159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.21483 -41.60559 -39.89780 -38.71911 -37.68608 -37.11039 -35.30714 -34.27154 -33.04687 -32.54207 -32.17691 -29.12651 -27.98659 -26.01561 -24.62869 -24.57979 -23.61048 -22.50800 -22.39133 -21.54995 -20.60317 -18.90091 -18.79729 -18.45682 -18.14555 -17.69336 -17.37114 -17.19627 -16.75449 -16.42519 -16.26376 -15.99051 -15.64726 -15.38039 -15.07629 -14.90211 -14.69522 -14.50596 -14.28247 -13.96123 -13.78336 -13.69444 -13.50145 -13.33077 -13.27850 -12.90621 -12.75760 -12.65065 -12.54511 -12.46124 -12.40040 -12.24380 -11.89348 -11.79238 -11.68747 -11.54291 -11.50626 -11.43752 -11.20617 -10.53952 -10.36300 -10.16230 -9.87219 -8.18797 -6.29569 0.25869 1.08960 1.23484 1.42828 1.43384 1.54506 1.61205 2.05544 2.38815 2.45134 3.15322 3.21762 3.42531 3.62384 3.69570 3.96535 3.98670 4.06675 4.08775 4.12410 4.19595 4.26694 4.28319 4.33630 4.53406 4.60430 4.64921 4.68884 4.74790 4.82791 4.89606 4.92026 4.92792 5.01099 5.05155 5.13920 5.16177 5.20353 5.24471 5.43920 5.47962 5.53716 5.71914 5.85353 5.91047 6.15881 6.24770 6.65758 6.66291 6.87410 6.89077 7.39863 8.92963 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029429 B = 0.001609 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.229834 B =17392.757890 C =17859.239351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.356 6.356 4 C 0.467 3.533 5 O -0.541 6.541 6 C -0.076 4.076 7 C -0.116 4.116 8 C 0.108 3.892 9 N -0.578 5.578 10 C 0.512 3.488 11 O -0.541 6.541 12 C 0.502 3.498 13 O -0.529 6.529 14 N -0.683 5.683 15 C 0.127 3.873 16 C -0.107 4.107 17 C 0.025 3.975 18 C -0.543 4.543 19 H 0.064 0.936 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.964 3.036 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.262 1.262 26 C 0.052 3.948 27 C -0.109 4.109 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.143 0.857 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.419 0.581 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.065 0.935 43 H -0.004 1.004 44 H -0.002 1.002 45 H 0.263 0.737 46 H 0.097 0.903 47 H 0.144 0.856 48 H 0.088 0.912 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.055 -8.691 -10.764 35.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.272 6.272 4 C 0.312 3.688 5 O -0.431 6.431 6 C -0.095 4.095 7 C -0.155 4.155 8 C -0.013 4.013 9 N -0.311 5.311 10 C 0.294 3.706 11 O -0.419 6.419 12 C 0.284 3.716 13 O -0.409 6.409 14 N -0.334 5.334 15 C 0.004 3.996 16 C -0.145 4.145 17 C -0.013 4.013 18 C -0.581 4.581 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.573 5.573 22 Si 0.789 3.211 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.186 1.186 26 C -0.069 4.069 27 C -0.147 4.147 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.161 0.839 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.256 0.744 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.014 0.986 44 H 0.016 0.984 45 H 0.072 0.928 46 H 0.115 0.885 47 H 0.160 0.840 48 H 0.107 0.893 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -32.630 -9.237 -10.880 35.615 hybrid contribution 0.924 0.113 0.823 1.243 sum -31.706 -9.124 -10.058 34.492 Atomic orbital electron populations 1.21817 0.90315 1.04276 1.03883 1.23268 0.97144 0.79412 1.02311 1.86503 1.23830 1.33403 1.83477 1.24158 0.80676 0.92984 0.71031 1.90682 1.61274 1.44443 1.46692 1.21234 0.95805 0.88960 1.03489 1.21898 1.03246 0.94663 0.95650 1.21949 0.77060 0.97005 1.05309 1.48114 1.07355 1.48646 1.26982 1.19896 0.87322 0.81181 0.82157 1.90747 1.76581 1.37216 1.37321 1.20407 0.88221 0.81798 0.81216 1.90344 1.76746 1.35312 1.38456 1.45938 1.07346 1.39333 1.40831 1.21501 0.77218 1.00240 1.00657 1.21645 0.95956 0.98616 0.98234 1.18933 0.90995 0.95635 0.95742 1.21686 0.92298 1.21333 1.22788 0.91809 1.25960 0.98554 0.97452 0.97833 1.70099 1.06302 1.39179 1.41683 0.85459 0.77660 0.79253 0.78744 1.19960 1.20943 1.18620 1.23261 1.05160 0.89852 0.88608 1.21698 0.92415 0.97049 1.03576 0.88577 0.91182 0.90956 0.91424 0.91867 0.83895 0.92482 0.86479 0.88778 0.87421 0.74350 0.91759 0.91260 0.91371 0.91625 0.98600 0.98372 0.92825 0.88533 0.83990 0.89309 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 71.98 0.74 -0.12 16 2 C 0.05 0.62 6.19 71.98 0.45 1.06 16 3 O -0.36 -5.10 10.10 -51.40 -0.52 -5.62 16 4 C 0.47 8.06 7.26 71.24 0.52 8.58 16 5 O -0.54 -13.36 15.73 21.97 0.35 -13.01 16 6 C -0.08 -0.92 2.58 -11.50 -0.03 -0.95 16 7 C -0.12 -1.26 5.31 30.68 0.16 -1.10 16 8 C 0.11 1.33 6.41 86.36 0.55 1.89 16 9 N -0.58 -10.80 2.97 -820.48 -2.44 -13.24 16 10 C 0.51 12.69 7.74 87.27 0.68 13.37 16 11 O -0.54 -15.15 15.94 -3.23 -0.05 -15.20 16 12 C 0.50 14.05 7.78 87.27 0.68 14.72 16 13 O -0.53 -16.32 13.10 -3.27 -0.04 -16.36 16 14 N -0.68 -19.25 5.55 -464.40 -2.58 -21.83 16 15 C 0.13 4.19 5.67 86.38 0.49 4.68 16 16 C -0.11 -4.03 5.27 30.60 0.16 -3.87 16 17 C 0.02 1.25 4.97 29.85 0.15 1.40 16 18 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 19 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 20 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 21 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 22 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 26 C 0.05 0.88 6.27 86.36 0.54 1.42 16 27 C -0.11 -1.82 4.66 30.67 0.14 -1.68 16 28 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 32 H 0.06 0.83 8.13 -2.38 -0.02 0.81 16 33 H 0.14 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.12 0.76 8.09 -2.38 -0.02 0.74 16 36 H 0.09 1.37 7.05 -2.39 -0.02 1.36 16 37 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.42 10.65 7.96 -92.71 -0.74 9.91 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 44 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 45 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 46 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.14 3.26 3.78 -78.70 -0.30 2.96 16 48 H 0.09 1.46 8.07 -2.39 -0.02 1.44 16 49 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 Total: -1.00 -72.14 403.75 2.88 -69.27 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.07 Total: 16.24 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 5.92 Total: 9.97 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -4.73 Total: -91.02 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.27 Total: -50.20 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -72.14 2.88 -69.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343157440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.933 kcal (2) G-P(sol) polarization free energy of solvation -72.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds