Wall clock time and date at job start Wed Apr 1 2020 00:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00411 * 2 1 4 4 O 1.20826 * 119.99680 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00122 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.46848 * 179.97438 * 5 3 2 7 7 C 1.37095 * 119.99857 * 269.99736 * 6 5 3 8 8 H 1.08005 * 119.99931 * 143.49685 * 7 6 5 9 9 C 1.38950 * 120.00446 * 323.49230 * 7 6 5 10 10 N 1.31417 * 120.00177 * 159.73311 * 9 7 6 11 11 Si 1.86799 * 119.99851 * 339.74306 * 9 7 6 12 12 H 1.48494 * 109.47513 * 95.50352 * 11 9 7 13 13 H 1.48500 * 109.47044 * 215.50374 * 11 9 7 14 14 H 1.48500 * 109.47196 * 335.49844 * 11 9 7 15 15 C 1.34780 * 119.99964 * 90.00402 * 6 5 3 16 16 O 1.21287 * 119.99590 * 354.71483 * 15 6 5 17 17 C 1.50699 * 120.00012 * 174.71588 * 15 6 5 18 18 N 1.46488 * 109.47064 * 185.04237 * 17 15 6 19 19 C 1.34783 * 119.99940 * 185.19904 * 18 17 15 20 20 O 1.21278 * 120.00174 * 354.76265 * 19 18 17 21 21 C 1.50701 * 119.99852 * 174.75894 * 19 18 17 22 22 C 1.53004 * 109.46857 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.46961 * 65.00192 * 22 21 19 24 24 C 1.53004 * 109.46961 * 179.97438 * 23 22 21 25 25 C 1.53006 * 109.46803 * 299.99916 * 24 23 22 26 26 C 1.52995 * 109.47294 * 60.00287 * 25 24 23 27 27 C 1.53004 * 109.46961 * 299.99616 * 26 25 24 28 28 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47675 * 300.00449 * 1 2 3 30 30 H 1.08999 * 109.47209 * 59.99934 * 1 2 3 31 31 H 1.09004 * 109.47141 * 59.99700 * 5 3 2 32 32 H 1.08996 * 109.47134 * 300.00326 * 5 3 2 33 33 H 0.96999 * 119.99966 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.46844 * 65.04286 * 17 15 6 35 35 H 1.09006 * 109.46711 * 305.04702 * 17 15 6 36 36 H 0.97005 * 120.00749 * 5.20193 * 18 17 15 37 37 H 1.09008 * 109.47045 * 60.00349 * 21 19 18 38 38 H 1.08997 * 109.47679 * 300.00105 * 21 19 18 39 39 H 1.08996 * 109.46795 * 305.00006 * 22 21 19 40 40 H 1.08990 * 109.47309 * 299.99668 * 23 22 21 41 41 H 1.08996 * 109.47518 * 60.00257 * 23 22 21 42 42 H 1.08997 * 109.47302 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.47313 * 59.99896 * 24 23 22 44 44 H 1.08996 * 109.47361 * 299.99551 * 25 24 23 45 45 H 1.09006 * 109.46792 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.47638 * 179.97438 * 26 25 24 47 47 H 1.09005 * 109.47397 * 59.99208 * 26 25 24 48 48 H 1.08997 * 109.47313 * 300.00104 * 27 26 25 49 49 H 1.08997 * 109.47302 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 -0.0002 7 6 4.1766 3.3361 -1.1878 8 1 3.9043 4.3772 -1.2804 9 6 4.7246 2.6624 -2.2724 10 7 4.5545 3.1280 -3.4895 11 14 5.7030 1.0944 -2.0006 12 1 4.8150 -0.0814 -2.1849 13 1 6.8180 1.0308 -2.9793 14 1 6.2538 1.0875 -0.6216 15 6 4.1724 3.3266 1.1667 16 8 3.9084 2.7768 2.2151 17 6 4.7136 4.7330 1.1688 18 7 4.9416 5.1664 2.5494 19 6 5.3266 6.4329 2.8033 20 8 5.5763 7.1862 1.8862 21 6 5.4468 6.9129 4.2268 22 6 5.8964 8.3754 4.2356 23 6 4.8085 9.2470 3.6050 24 6 5.2577 10.7096 3.6144 25 6 5.4996 11.1595 5.0567 26 6 6.5875 10.2879 5.6872 27 6 6.1382 8.8253 5.6778 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9564 0.7804 -0.8891 32 1 3.9557 0.7808 0.8908 33 1 4.9368 2.6575 -4.2467 34 1 3.9945 5.3997 0.6927 35 1 5.6544 4.7611 0.6190 36 1 4.8155 4.5420 3.2810 37 1 6.1805 6.3037 4.7549 38 1 4.4796 6.8275 4.7220 39 1 6.8189 8.4753 3.6638 40 1 4.6359 8.9262 2.5778 41 1 3.8859 9.1471 4.1768 42 1 4.4826 11.3307 3.1656 43 1 6.1804 10.8099 3.0429 44 1 4.5769 11.0592 5.6282 45 1 5.8192 12.2016 5.0634 46 1 6.7602 10.6086 6.7145 47 1 7.5102 10.3881 5.1156 48 1 5.2156 8.7249 6.2493 49 1 6.9134 8.2042 6.1266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348798203.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:36 Heat of formation + Delta-G solvation = -166.892278 kcal Electronic energy + Delta-G solvation = -30225.009825 eV Core-core repulsion = 25958.977480 eV Total energy + Delta-G solvation = -4266.032345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.18589 -39.83021 -38.84352 -37.91550 -36.04582 -35.09924 -33.93417 -32.70532 -32.18283 -30.74497 -29.64347 -28.12672 -26.84647 -25.76734 -24.66818 -22.66106 -21.75615 -20.97578 -19.99665 -19.74202 -19.33593 -17.81537 -17.40699 -16.98311 -16.21925 -15.92367 -15.72123 -15.52786 -15.39181 -15.33017 -14.93539 -14.48254 -14.25535 -14.06939 -13.94622 -13.57905 -13.29784 -13.19178 -12.92694 -12.79188 -12.44397 -12.26230 -12.17424 -12.00306 -11.92434 -11.80549 -11.64433 -11.47430 -11.16183 -11.12509 -10.98176 -10.65246 -10.48170 -10.40253 -10.28637 -10.19496 -10.07408 -9.99468 -9.47216 -9.38515 -8.97932 -8.66328 -8.18013 -6.66114 -4.29932 2.77303 2.85756 2.89524 2.95478 3.08166 3.11078 3.34971 3.59653 3.90759 4.20885 4.59061 4.66641 4.69597 4.76066 5.01900 5.06624 5.18408 5.30488 5.32517 5.37306 5.39957 5.44807 5.45066 5.50981 5.53825 5.57805 5.61206 5.64455 5.70420 5.73571 5.82481 5.85658 5.96230 6.06541 6.10926 6.13361 6.16151 6.24820 6.25015 6.47893 6.52227 6.75741 6.78802 6.96042 7.80328 7.89124 8.04259 8.31834 8.55296 8.67381 9.01875 9.30586 10.43850 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.002531 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.550244 B =11060.558346 C =11911.055759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.486 6.486 5 C 0.108 3.892 6 N -0.439 5.439 7 C -0.349 4.349 8 H 0.112 0.888 9 C 0.068 3.932 10 N -0.844 5.844 11 Si 0.865 3.135 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.255 1.255 15 C 0.483 3.517 16 O -0.594 6.594 17 C 0.123 3.877 18 N -0.718 5.718 19 C 0.510 3.490 20 O -0.540 6.540 21 C -0.137 4.137 22 C -0.070 4.070 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.115 4.115 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.279 0.721 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.407 0.593 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 4.176 13.773 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.371 6.371 5 C -0.017 4.017 6 N -0.159 5.159 7 C -0.476 4.476 8 H 0.130 0.870 9 C -0.141 4.141 10 N -0.477 5.477 11 Si 0.692 3.308 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.179 1.179 15 C 0.274 3.726 16 O -0.479 6.479 17 C -0.003 4.003 18 N -0.372 5.372 19 C 0.296 3.704 20 O -0.417 6.417 21 C -0.177 4.177 22 C -0.089 4.089 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.152 4.152 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.243 0.757 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.999 4.746 13.370 14.222 hybrid contribution 0.025 -1.188 -0.005 1.188 sum 1.024 3.558 13.365 13.868 Atomic orbital electron populations 1.23144 0.77425 1.02884 1.02307 1.86514 1.22761 1.34449 1.84944 1.24623 0.92708 0.81274 0.72433 1.90625 1.66509 1.36226 1.43699 1.21411 0.87168 0.88199 1.04928 1.43319 1.57554 1.08527 1.06542 1.19182 1.43208 0.98637 0.86582 0.87028 1.25379 0.95730 0.98315 0.94721 1.69743 1.39546 1.40231 0.98193 0.87110 0.80963 0.82816 0.79949 1.19508 1.20493 1.17931 1.20274 0.80573 0.88621 0.83153 1.90537 1.56595 1.69113 1.31642 1.20838 1.03059 0.93407 0.83032 1.45885 1.69238 1.12591 1.09523 1.20610 0.76718 0.81415 0.91634 1.90673 1.49465 1.54724 1.46888 1.21744 1.03807 0.97945 0.94168 1.20901 0.99987 0.92074 0.95900 1.21723 0.97187 0.94188 1.02795 1.21502 1.01337 0.96529 0.96122 1.21556 0.98847 0.98698 0.96646 1.21508 0.98686 0.95085 1.00279 1.21606 1.01194 0.96082 0.96366 0.88668 0.92316 0.92139 0.87799 0.86834 0.91019 0.88743 0.88302 0.75674 0.89088 0.89017 0.90340 0.89646 0.92816 0.92332 0.91992 0.92253 0.92486 0.92335 0.92016 0.92003 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.74 10.56 -39.26 -0.41 -7.16 16 3 C 0.45 9.71 8.02 36.00 0.29 10.00 16 4 O -0.49 -11.85 16.18 -18.75 -0.30 -12.15 16 5 C 0.11 2.31 4.75 -5.20 -0.02 2.29 16 6 N -0.44 -10.25 1.69 -116.10 -0.20 -10.45 16 7 C -0.35 -8.86 9.03 -14.93 -0.13 -8.99 16 8 H 0.11 3.02 7.36 -52.48 -0.39 2.64 16 9 C 0.07 1.72 5.35 -17.47 -0.09 1.62 16 10 N -0.84 -22.53 13.96 55.50 0.77 -21.76 16 11 Si 0.87 18.62 24.84 -169.99 -4.22 14.40 16 12 H -0.27 -5.48 6.71 56.52 0.38 -5.10 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 15 C 0.48 10.69 7.68 -10.98 -0.08 10.61 16 16 O -0.59 -13.46 15.33 5.55 0.09 -13.37 16 17 C 0.12 2.43 4.87 -5.20 -0.03 2.41 16 18 N -0.72 -11.97 5.51 -61.48 -0.34 -12.31 16 19 C 0.51 8.01 7.54 -10.98 -0.08 7.92 16 20 O -0.54 -10.23 13.97 5.56 0.08 -10.15 16 21 C -0.14 -1.54 5.18 -27.88 -0.14 -1.68 16 22 C -0.07 -0.77 1.84 -90.62 -0.17 -0.94 16 23 C -0.12 -1.46 4.94 -26.73 -0.13 -1.59 16 24 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 25 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 26 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 27 C -0.11 -1.01 5.20 -26.73 -0.14 -1.15 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.10 2.21 2.97 -51.93 -0.15 2.05 16 32 H 0.11 2.21 7.50 -51.93 -0.39 1.82 16 33 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.09 1.96 7.78 -51.93 -0.40 1.56 16 35 H 0.10 1.99 8.04 -51.93 -0.42 1.57 16 36 H 0.41 6.30 7.49 -40.82 -0.31 5.99 16 37 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 40 H 0.09 1.28 5.95 -51.93 -0.31 0.97 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 393.01 15.07 5.92 5.92 Total: -1.00 -30.68 393.01 -6.62 -37.30 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -7.85 Total: 11.40 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: -0.15 Total: 18.32 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.24 Total: -44.52 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.56 Total: -42.83 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.22 Total: 14.40 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.68 -6.62 -37.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348798203.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.595 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds