Wall clock time and date at job start Wed Apr 1 2020 00:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00036 * 2 1 4 4 O 1.20829 * 120.00010 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00288 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.32834 * 55.70346 * 5 3 2 7 7 C 1.54480 * 110.36939 * 293.45290 * 5 3 2 8 8 C 1.54511 * 104.06134 * 217.18655 * 7 5 3 9 9 C 1.54478 * 104.06246 * 0.02562 * 8 7 5 10 10 H 1.08998 * 110.37433 * 265.03332 * 9 8 7 11 11 C 1.50702 * 110.37480 * 142.80869 * 9 8 7 12 12 O 1.21287 * 120.00139 * 245.00019 * 11 9 8 13 13 N 1.34780 * 120.00003 * 64.99480 * 11 9 8 14 14 C 1.46495 * 119.99921 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.47001 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.49645 * 55.06379 * 15 14 13 17 17 C 1.53039 * 109.49649 * 175.16299 * 15 14 13 18 18 C 1.53045 * 109.53825 * 181.31592 * 17 15 14 19 19 C 1.53190 * 109.31185 * 298.63979 * 18 17 15 20 20 N 1.46919 * 108.78044 * 54.63029 * 19 18 17 21 21 C 1.36932 * 120.63212 * 126.37041 * 20 19 18 22 22 H 1.08002 * 120.00447 * 208.02451 * 21 20 19 23 23 C 1.38818 * 120.00057 * 28.02207 * 21 20 19 24 24 N 1.31616 * 119.99534 * 17.52710 * 23 21 20 25 25 Si 1.86797 * 120.00159 * 197.52715 * 23 21 20 26 26 H 1.48501 * 109.47296 * 94.06650 * 25 23 21 27 27 H 1.48498 * 109.47086 * 214.06846 * 25 23 21 28 28 H 1.48506 * 109.46982 * 334.06673 * 25 23 21 29 29 C 1.46931 * 118.73779 * 306.39654 * 20 19 18 30 30 O 1.44424 * 110.37392 * 177.95197 * 5 3 2 31 31 H 1.09003 * 109.47140 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47695 * 299.99913 * 1 2 3 33 33 H 1.08999 * 109.47410 * 60.00011 * 1 2 3 34 34 H 1.08996 * 110.51193 * 335.82929 * 7 5 3 35 35 H 1.09002 * 110.51017 * 98.54720 * 7 5 3 36 36 H 1.09002 * 110.50944 * 118.64362 * 8 7 5 37 37 H 1.08993 * 110.51241 * 241.21917 * 8 7 5 38 38 H 0.96994 * 119.99848 * 0.02562 * 13 11 9 39 39 H 1.09000 * 109.47492 * 300.00796 * 14 13 11 40 40 H 1.08999 * 109.47356 * 60.00684 * 14 13 11 41 41 H 1.08998 * 109.46191 * 301.33746 * 17 15 14 42 42 H 1.09001 * 109.46201 * 61.29798 * 17 15 14 43 43 H 1.08994 * 109.49950 * 178.68410 * 18 17 15 44 44 H 1.09000 * 109.51975 * 58.60017 * 18 17 15 45 45 H 1.09002 * 109.58260 * 294.83855 * 19 18 17 46 46 H 1.09000 * 109.70034 * 174.49502 * 19 18 17 47 47 H 0.97007 * 119.99601 * 179.97438 * 24 23 21 48 48 H 1.08997 * 109.58693 * 293.81496 * 29 20 19 49 49 H 1.08997 * 109.58442 * 173.39488 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9749 0.7194 -0.8435 7 6 4.1329 0.7278 1.3295 8 6 5.3363 1.6485 1.6319 9 6 5.3539 2.6434 0.4503 10 1 6.0396 2.3004 -0.3244 11 6 5.7480 4.0176 0.9272 12 8 4.9536 4.9320 0.8652 13 7 6.9832 4.2304 1.4228 14 6 7.3661 5.5661 1.8869 15 6 8.8084 5.5349 2.3965 16 1 9.4614 5.1433 1.6165 17 6 9.2493 6.9523 2.7688 18 6 10.7027 6.9270 3.2477 19 6 10.8099 6.0439 4.4948 20 7 10.2532 4.7198 4.1860 21 6 10.9871 3.5853 4.4080 22 1 10.8145 2.7043 3.8076 23 6 11.9532 3.5675 5.4048 24 7 11.9400 4.4831 6.3502 25 14 13.2716 2.2442 5.4043 26 1 14.4806 2.7502 4.7060 27 1 13.6196 1.8916 6.8042 28 1 12.7626 1.0387 4.7021 29 6 8.8941 4.6361 3.6340 30 8 3.9975 2.6524 -0.0479 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 3.3876 0.8009 2.1214 35 1 4.4626 -0.3041 1.2080 36 1 5.1858 2.1769 2.5733 37 1 6.2605 1.0716 1.6624 38 1 7.6185 3.4992 1.4721 39 1 7.2878 6.2739 1.0617 40 1 6.7018 5.8745 2.6942 41 1 9.1658 7.5997 1.8959 42 1 8.6110 7.3336 3.5659 43 1 11.0234 7.9400 3.4905 44 1 11.3387 6.5229 2.4601 45 1 10.2471 6.4955 5.3118 46 1 11.8559 5.9422 4.7842 47 1 12.6149 4.4704 7.0470 48 1 8.1750 4.9728 4.3807 49 1 8.6767 3.6057 3.3530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354714454.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:44 Heat of formation + Delta-G solvation = -146.901200 kcal Electronic energy + Delta-G solvation = -30062.286521 eV Core-core repulsion = 25797.121053 eV Total energy + Delta-G solvation = -4265.165467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.17611 -40.16441 -38.76406 -37.68857 -36.71254 -34.86697 -33.15830 -32.58580 -31.28418 -30.48338 -30.07061 -28.07883 -25.95829 -25.32768 -24.34602 -22.49436 -22.10996 -21.29564 -21.02537 -20.45506 -19.14058 -18.34037 -17.53998 -17.25003 -16.83950 -16.65557 -16.31989 -16.04328 -15.41948 -14.97807 -14.84332 -14.51327 -14.29517 -14.12789 -13.87551 -13.54229 -13.49826 -13.44342 -12.83987 -12.78171 -12.43796 -12.37870 -12.26823 -12.21254 -12.15781 -11.92958 -11.35975 -11.30153 -11.19161 -11.05938 -10.82030 -10.77123 -10.53098 -10.38394 -10.25944 -10.21111 -9.98322 -9.79377 -9.54545 -9.46120 -8.98351 -8.51102 -6.72485 -5.83833 -3.26860 1.79503 1.92802 2.56360 2.92054 3.32970 3.39848 3.41512 3.71139 3.99337 4.24837 4.34328 4.43190 4.49092 4.58518 4.65248 4.72041 4.80223 4.93456 5.05176 5.08232 5.13936 5.26179 5.33811 5.40245 5.42642 5.45511 5.58179 5.60293 5.80090 5.91083 5.92417 5.96081 6.13375 6.19917 6.29057 6.34180 6.45445 6.55340 6.66750 6.73352 6.82545 6.92188 7.35810 7.38017 7.50399 7.63296 7.73614 8.21028 8.39437 9.15610 9.79325 10.36386 11.24375 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.002279 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.054280 B =12283.268612 C =13677.129722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.464 3.536 4 O -0.478 6.478 5 C 0.082 3.918 6 H 0.114 0.886 7 C -0.138 4.138 8 C -0.146 4.146 9 C 0.056 3.944 10 H 0.104 0.896 11 C 0.516 3.484 12 O -0.520 6.520 13 N -0.719 5.719 14 C 0.128 3.872 15 C -0.117 4.117 16 H 0.074 0.926 17 C -0.100 4.100 18 C -0.141 4.141 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.254 4.254 22 H 0.065 0.935 23 C 0.003 3.997 24 N -0.900 5.900 25 Si 0.902 3.098 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.154 3.846 30 O -0.317 6.317 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.404 0.596 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.017 0.983 46 H 0.086 0.914 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.940 -8.960 -12.789 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.363 6.363 5 C 0.023 3.977 6 H 0.131 0.869 7 C -0.175 4.175 8 C -0.184 4.184 9 C -0.005 4.005 10 H 0.121 0.879 11 C 0.300 3.700 12 O -0.395 6.395 13 N -0.372 5.372 14 C 0.005 3.995 15 C -0.138 4.138 16 H 0.092 0.908 17 C -0.138 4.138 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.314 5.314 21 C -0.384 4.384 22 H 0.083 0.917 23 C -0.196 4.196 24 N -0.544 5.544 25 Si 0.732 3.268 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.204 1.204 29 C 0.027 3.973 30 O -0.234 6.234 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.104 0.896 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.783 -7.780 -12.738 21.723 hybrid contribution 0.904 -1.054 0.134 1.395 sum -14.880 -8.834 -12.604 21.408 Atomic orbital electron populations 1.23318 0.75667 1.03902 1.02865 1.86457 1.23814 1.32697 1.84437 1.23172 0.91118 0.81820 0.73494 1.90745 1.66486 1.36210 1.42845 1.22426 0.88219 0.86138 1.00952 0.86886 1.22884 0.98087 1.00877 0.95685 1.22981 0.99718 0.96711 0.98998 1.22984 0.85969 0.94599 0.96953 0.87889 1.19983 0.82321 0.89352 0.78330 1.90757 1.50501 1.44243 1.53997 1.45942 1.13897 1.13424 1.63980 1.21494 0.96445 0.82685 0.98895 1.21958 0.93158 0.98472 1.00208 0.90795 1.21342 0.97836 0.94780 0.99859 1.22165 0.95033 0.99660 1.01211 1.20795 1.00539 0.83393 0.90982 1.44036 1.10510 1.02644 1.74170 1.19154 1.14886 0.92290 1.12062 0.91729 1.25054 1.01289 0.98268 0.95022 1.70047 1.35055 1.36519 1.12803 0.86287 0.82291 0.81362 0.76859 1.21476 1.21800 1.20413 1.20898 0.88279 0.96246 0.91867 1.89409 1.26977 1.22118 1.84940 0.87739 0.91671 0.91714 0.89739 0.88197 0.89209 0.88236 0.76153 0.91824 0.91453 0.93387 0.92443 0.93164 0.92738 0.96444 0.89605 0.93604 0.96334 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.10 10.57 -39.25 -0.41 -3.51 16 3 C 0.46 5.18 7.20 36.01 0.26 5.44 16 4 O -0.48 -7.33 16.30 -25.29 -0.41 -7.74 16 5 C 0.08 0.76 3.82 -27.11 -0.10 0.65 16 6 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 7 C -0.14 -0.98 6.62 -25.16 -0.17 -1.15 16 8 C -0.15 -1.17 6.61 -25.16 -0.17 -1.34 16 9 C 0.06 0.59 3.71 -27.11 -0.10 0.48 16 10 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 11 C 0.52 7.22 7.08 -10.98 -0.08 7.14 16 12 O -0.52 -9.82 16.56 -13.63 -0.23 -10.05 16 13 N -0.72 -8.94 5.31 -60.29 -0.32 -9.26 16 14 C 0.13 1.81 5.07 -4.04 -0.02 1.79 16 15 C -0.12 -1.83 2.38 -90.50 -0.22 -2.04 16 16 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 17 C -0.10 -1.60 5.17 -26.69 -0.14 -1.73 16 18 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 19 C 0.17 3.88 5.31 -3.72 -0.02 3.86 16 20 N -0.59 -13.98 2.99 -172.33 -0.52 -14.50 16 21 C -0.25 -6.61 9.58 -15.06 -0.14 -6.75 16 22 H 0.07 1.62 7.89 -52.49 -0.41 1.21 16 23 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 24 N -0.90 -25.46 11.22 55.49 0.62 -24.84 16 25 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 C 0.15 2.94 5.60 -3.71 -0.02 2.91 16 30 O -0.32 -4.24 10.18 -64.22 -0.65 -4.89 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 33 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 34 H 0.08 0.66 7.86 -51.93 -0.41 0.25 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.85 7.86 -51.93 -0.41 0.44 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.40 4.18 7.69 -40.82 -0.31 3.86 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.05 0.89 7.13 -51.93 -0.37 0.52 16 LS Contribution 396.79 15.07 5.98 5.98 Total: -1.00 -35.57 396.79 -9.19 -44.76 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.13 Total: 0.40 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -0.09 Total: 7.80 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.21 Total: -48.60 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.71 Total: -26.19 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.57 -9.19 -44.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354714454.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.141 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds