Wall clock time and date at job start Wed Apr 1 2020 00:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34235 * 116.99809 * 2 1 4 4 O 1.20825 * 119.99870 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00090 * 179.97438 * 3 2 1 6 6 H 1.09006 * 110.54944 * 57.88095 * 5 3 2 7 7 C 1.54995 * 110.61959 * 295.00458 * 5 3 2 8 8 C 1.54810 * 102.09199 * 204.31581 * 7 5 3 9 9 C 1.54100 * 104.18677 * 20.88197 * 8 7 5 10 10 H 1.09007 * 109.87482 * 242.45311 * 9 8 7 11 11 C 1.50695 * 109.87965 * 121.45387 * 9 8 7 12 12 O 1.21275 * 119.99993 * 244.99830 * 11 9 8 13 13 N 1.34783 * 120.00118 * 64.99754 * 11 9 8 14 14 C 1.46499 * 120.00253 * 179.97438 * 13 11 9 15 15 C 1.52992 * 109.47389 * 180.02562 * 14 13 11 16 16 H 1.09005 * 109.49971 * 304.94015 * 15 14 13 17 17 C 1.53039 * 109.52723 * 184.85820 * 15 14 13 18 18 C 1.53035 * 109.54117 * 178.66543 * 17 15 14 19 19 C 1.52764 * 109.38272 * 61.23839 * 18 17 15 20 20 N 1.46930 * 109.00948 * 305.58760 * 19 18 17 21 21 C 1.36933 * 120.63231 * 233.58307 * 20 19 18 22 22 H 1.08003 * 119.99756 * 151.85532 * 21 20 19 23 23 C 1.38810 * 119.99898 * 331.85966 * 21 20 19 24 24 N 1.31610 * 120.00090 * 342.99442 * 23 21 20 25 25 Si 1.86805 * 119.99845 * 162.99929 * 23 21 20 26 26 H 1.48502 * 109.46992 * 266.23159 * 25 23 21 27 27 H 1.48503 * 109.46878 * 146.23043 * 25 23 21 28 28 H 1.48501 * 109.47000 * 26.23150 * 25 23 21 29 29 C 1.46931 * 118.73686 * 53.30825 * 20 19 18 30 30 O 1.43742 * 107.29384 * 2.02451 * 9 8 7 31 31 H 1.08995 * 109.47126 * 59.99649 * 1 2 3 32 32 H 1.09002 * 109.46791 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47057 * 299.99644 * 1 2 3 34 34 H 1.09000 * 110.91143 * 86.11854 * 7 5 3 35 35 H 1.09003 * 110.90929 * 322.51525 * 7 5 3 36 36 H 1.08998 * 110.48756 * 262.20391 * 8 7 5 37 37 H 1.09002 * 110.60006 * 139.61630 * 8 7 5 38 38 H 0.97008 * 119.99586 * 0.02562 * 13 11 9 39 39 H 1.09004 * 109.47032 * 59.99979 * 14 13 11 40 40 H 1.08998 * 109.47129 * 300.00479 * 14 13 11 41 41 H 1.08999 * 109.45440 * 298.68933 * 17 15 14 42 42 H 1.08997 * 109.46039 * 58.65599 * 17 15 14 43 43 H 1.09002 * 109.50084 * 181.31186 * 18 17 15 44 44 H 1.08997 * 109.50170 * 301.38200 * 18 17 15 45 45 H 1.09005 * 109.51353 * 185.70891 * 19 18 17 46 46 H 1.08997 * 109.43146 * 65.42331 * 19 18 17 47 47 H 0.97003 * 120.00299 * 180.02562 * 24 23 21 48 48 H 1.09001 * 109.58453 * 66.43002 * 29 20 19 49 49 H 1.08997 * 109.58681 * 186.71537 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9772 0.7529 -0.8636 7 6 4.1430 0.6915 1.3156 8 6 5.5127 1.4062 1.4143 9 6 5.3539 2.6519 0.5212 10 1 6.0599 2.6058 -0.3081 11 6 5.5973 3.8984 1.3323 12 8 4.6951 4.6874 1.5172 13 7 6.8178 4.1364 1.8524 14 6 7.0546 5.3484 2.6405 15 6 8.5108 5.3758 3.1089 16 1 8.7365 4.4564 3.6492 17 6 8.7288 6.5771 4.0317 18 6 10.1768 6.5860 4.5270 19 6 11.1204 6.7157 3.3326 20 7 10.8191 5.6502 2.3668 21 6 11.8070 4.8139 1.9199 22 1 11.5632 3.8098 1.6054 23 6 13.1217 5.2566 1.8711 24 7 13.3847 6.5450 1.9254 25 14 14.5177 4.0235 1.7282 26 1 15.0253 3.6913 3.0837 27 1 15.6156 4.6104 0.9185 28 1 14.0220 2.7887 1.0689 29 6 9.4365 5.4952 1.8942 30 8 4.0065 2.6499 0.0206 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 4.2722 -0.3880 1.2385 35 1 3.5092 0.9463 2.1651 36 1 6.3067 0.7632 1.0346 37 1 5.7194 1.6987 2.4438 38 1 7.5396 3.5054 1.7042 39 1 6.3936 5.3532 3.5072 40 1 6.8544 6.2262 2.0261 41 1 8.5268 7.4973 3.4835 42 1 8.0539 6.5070 4.8847 43 1 10.3252 7.4285 5.2024 44 1 10.3867 5.6555 5.0544 45 1 12.1520 6.6205 3.6716 46 1 10.9767 7.6877 2.8609 47 1 14.3034 6.8544 1.8909 48 1 9.1528 6.3658 1.3029 49 1 9.3580 4.5965 1.2825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354714456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:47 Heat of formation + Delta-G solvation = -170.467900 kcal Electronic energy + Delta-G solvation = -30013.242332 eV Core-core repulsion = 25747.054936 eV Total energy + Delta-G solvation = -4266.187396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98591 -41.14216 -39.82496 -39.06077 -37.55512 -36.27013 -34.72953 -33.38501 -32.40200 -32.26645 -31.22029 -28.73185 -27.26427 -26.95547 -25.29592 -23.82059 -23.20788 -22.48205 -22.01535 -21.49760 -20.60917 -19.23624 -18.63017 -18.27063 -17.99414 -17.62210 -17.37473 -16.98209 -16.76609 -16.34893 -16.05344 -15.72507 -15.29687 -15.20669 -15.00823 -14.81470 -14.63306 -14.48906 -14.23769 -13.99445 -13.74307 -13.62039 -13.49088 -13.00801 -12.91215 -12.87208 -12.83005 -12.65530 -12.49542 -12.23667 -12.01304 -11.92758 -11.89216 -11.79977 -11.66812 -11.56330 -11.34128 -11.22352 -11.08218 -10.58027 -10.50866 -10.11071 -8.65474 -7.83602 -5.29615 0.98584 1.22818 1.50107 1.51591 1.53800 1.60301 2.02754 2.53941 2.92158 3.30271 3.31527 3.56492 3.61401 3.71320 3.76796 3.95575 4.00429 4.01506 4.03976 4.07794 4.27783 4.28526 4.33054 4.41828 4.55553 4.59446 4.63162 4.68597 4.77677 4.84067 4.89410 4.91882 4.94124 4.99869 5.02329 5.12328 5.20331 5.23977 5.34384 5.38260 5.46132 5.53543 5.60029 5.69791 5.80083 6.41713 6.52439 6.60343 7.17626 7.19966 7.89108 8.41744 9.22965 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.002140 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.147259 B =13079.290807 C =14090.364625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.348 6.348 3 C 0.464 3.536 4 O -0.533 6.533 5 C 0.077 3.923 6 H 0.154 0.846 7 C -0.131 4.131 8 C -0.138 4.138 9 C 0.057 3.943 10 H 0.134 0.866 11 C 0.506 3.494 12 O -0.579 6.579 13 N -0.709 5.709 14 C 0.138 3.862 15 C -0.097 4.097 16 H 0.084 0.916 17 C -0.099 4.099 18 C -0.129 4.129 19 C 0.173 3.827 20 N -0.608 5.608 21 C -0.257 4.257 22 H 0.076 0.924 23 C -0.056 4.056 24 N -0.938 5.938 25 Si 0.967 3.033 26 H -0.288 1.288 27 H -0.301 1.301 28 H -0.261 1.261 29 C 0.151 3.849 30 O -0.365 6.365 31 H 0.060 0.940 32 H 0.142 0.858 33 H 0.057 0.943 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.416 0.584 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.051 0.949 46 H -0.011 1.011 47 H 0.247 0.753 48 H 0.002 0.998 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.358 -18.320 -0.261 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.307 3.693 4 O -0.421 6.421 5 C 0.019 3.981 6 H 0.171 0.829 7 C -0.168 4.168 8 C -0.176 4.176 9 C -0.004 4.004 10 H 0.152 0.848 11 C 0.292 3.708 12 O -0.458 6.458 13 N -0.362 5.362 14 C 0.013 3.987 15 C -0.118 4.118 16 H 0.102 0.898 17 C -0.137 4.137 18 C -0.168 4.168 19 C 0.047 3.953 20 N -0.331 5.331 21 C -0.387 4.387 22 H 0.094 0.906 23 C -0.251 4.251 24 N -0.585 5.585 25 Si 0.796 3.204 26 H -0.215 1.215 27 H -0.229 1.229 28 H -0.186 1.186 29 C 0.026 3.974 30 O -0.283 6.283 31 H 0.079 0.921 32 H 0.160 0.840 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.156 0.844 37 H 0.105 0.895 38 H 0.254 0.746 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.007 0.993 47 H 0.057 0.943 48 H 0.020 0.980 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.210 -17.215 -0.221 26.549 hybrid contribution 1.061 0.242 -0.279 1.124 sum -19.148 -16.973 -0.500 25.593 Atomic orbital electron populations 1.23615 0.74404 1.06140 1.02399 1.86460 1.25073 1.31237 1.83684 1.23748 0.92090 0.81624 0.71860 1.90724 1.67782 1.38030 1.45606 1.22968 0.86757 0.84560 1.03808 0.82897 1.23140 0.95599 1.03821 0.94259 1.23074 0.99499 0.94001 1.01026 1.22978 0.85630 0.93699 0.98081 0.84841 1.21040 0.82258 0.87830 0.79645 1.90721 1.44875 1.49529 1.60673 1.45857 1.11798 1.25101 1.53466 1.21259 0.95769 0.86761 0.94876 1.21699 0.92276 1.00095 0.97689 0.89805 1.21348 0.96367 0.97162 0.98835 1.21920 0.95683 1.01244 0.97984 1.20531 0.97582 0.88730 0.88468 1.44299 1.04144 1.36580 1.48123 1.19586 0.87641 0.93612 1.37827 0.90620 1.25847 1.00807 0.97011 1.01456 1.70209 1.18456 1.13966 1.55853 0.85253 0.78954 0.79011 0.77231 1.21507 1.22865 1.18561 1.21046 0.84241 0.98334 0.93817 1.89087 1.29159 1.24940 1.85156 0.92123 0.84042 0.92372 0.84249 0.91453 0.84449 0.89453 0.74622 0.91190 0.93042 0.93025 0.90261 0.91466 0.92537 0.93050 0.99295 0.94348 0.98029 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.35 -5.36 10.57 -51.47 -0.54 -5.91 16 3 C 0.46 10.02 7.33 71.24 0.52 10.54 16 4 O -0.53 -16.91 16.32 28.16 0.46 -16.46 16 5 C 0.08 1.25 3.87 30.53 0.12 1.37 16 6 H 0.15 1.26 8.14 -2.38 -0.02 1.24 16 7 C -0.13 -1.36 6.57 31.89 0.21 -1.15 16 8 C -0.14 -1.39 6.61 31.58 0.21 -1.18 16 9 C 0.06 1.06 3.84 30.22 0.12 1.17 16 10 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 11 C 0.51 13.72 6.95 87.65 0.61 14.33 16 12 O -0.58 -22.36 16.53 15.70 0.26 -22.10 16 13 N -0.71 -16.38 5.30 -463.08 -2.46 -18.83 16 14 C 0.14 3.69 5.07 86.38 0.44 4.13 16 15 C -0.10 -2.85 2.37 -10.72 -0.03 -2.88 16 16 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 17 C -0.10 -2.98 5.17 30.62 0.16 -2.82 16 18 C -0.13 -4.59 6.06 30.53 0.19 -4.40 16 19 C 0.17 8.15 5.28 86.22 0.45 8.60 16 20 N -0.61 -28.93 3.00 -699.90 -2.10 -31.02 16 21 C -0.26 -13.28 9.58 84.03 0.81 -12.47 16 22 H 0.08 3.68 7.89 -2.91 -0.02 3.66 16 23 C -0.06 -3.04 4.91 84.86 0.42 -2.62 16 24 N -0.94 -54.94 11.20 21.65 0.24 -54.69 16 25 Si 0.97 43.16 29.59 68.60 2.03 45.19 16 26 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 28 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 29 C 0.15 5.70 5.60 86.36 0.48 6.19 16 30 O -0.36 -9.45 10.03 -121.19 -1.22 -10.67 16 31 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 32 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 34 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.07 0.95 8.05 -2.39 -0.02 0.93 16 36 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.09 0.99 7.69 -2.39 -0.02 0.98 16 38 H 0.42 7.44 7.70 -92.70 -0.71 6.73 16 39 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.05 2.77 6.06 -2.38 -0.01 2.75 16 46 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 47 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 48 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.06 2.19 7.14 -2.39 -0.02 2.18 16 Total: -1.00 -83.35 396.72 2.81 -80.54 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.23 Total: 13.66 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 5.90 Total: 20.29 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -4.31 Total: -104.55 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -1.04 Total: -55.13 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -83.35 2.81 -80.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354714456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.929 kcal (2) G-P(sol) polarization free energy of solvation -83.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds