Wall clock time and date at job start Tue Mar 31 2020 23:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00487 * 2 1 4 4 C 1.52996 * 109.47333 * 270.00483 * 3 2 1 5 5 C 1.52995 * 109.47203 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47049 * 179.97438 * 5 4 3 7 7 O 1.20827 * 120.00272 * 359.97438 * 6 5 4 8 8 O 1.34230 * 119.99984 * 180.02562 * 6 5 4 9 9 C 1.34786 * 119.99825 * 180.02562 * 2 1 3 10 10 O 1.21345 * 119.99784 * 185.00638 * 9 2 1 11 11 C 1.49453 * 119.99943 * 5.00154 * 9 2 1 12 12 O 1.21341 * 119.99965 * 275.41221 * 11 9 2 13 13 N 1.34779 * 119.99767 * 95.40867 * 11 9 2 14 14 C 1.46918 * 120.62972 * 174.94116 * 13 11 9 15 15 C 1.53198 * 108.89351 * 126.34008 * 14 13 11 16 16 C 1.53356 * 109.14413 * 54.57878 * 15 14 13 17 17 C 1.52998 * 109.41490 * 178.67211 * 16 15 14 18 18 C 1.50700 * 109.47467 * 295.12726 * 17 16 15 19 19 H 1.07998 * 119.99672 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00075 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99974 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47192 * 90.00158 * 22 20 18 24 24 H 1.48501 * 109.47403 * 210.00736 * 22 20 18 25 25 H 1.48508 * 109.46920 * 330.00457 * 22 20 18 26 26 C 1.53042 * 109.60676 * 298.71091 * 16 15 14 27 27 C 1.46927 * 120.62966 * 354.96377 * 13 11 9 28 28 H 1.09002 * 109.47406 * 264.80977 * 1 2 3 29 29 H 1.09004 * 109.46992 * 24.80840 * 1 2 3 30 30 H 1.09005 * 109.47388 * 144.80727 * 1 2 3 31 31 H 1.09005 * 109.46563 * 30.00253 * 3 2 1 32 32 H 1.08998 * 109.47232 * 150.00016 * 3 2 1 33 33 H 1.09004 * 109.46594 * 299.99526 * 4 3 2 34 34 H 1.08998 * 109.47343 * 59.99601 * 4 3 2 35 35 H 1.09004 * 109.47056 * 299.99363 * 5 4 3 36 36 H 1.08998 * 109.47199 * 59.99633 * 5 4 3 37 37 H 0.96700 * 117.00129 * 179.97438 * 8 6 5 38 38 H 1.09002 * 109.59059 * 246.20184 * 14 13 11 39 39 H 1.09000 * 109.58485 * 6.48694 * 14 13 11 40 40 H 1.08995 * 109.49695 * 174.65561 * 15 14 13 41 41 H 1.09001 * 109.49816 * 294.76118 * 15 14 13 42 42 H 1.09004 * 109.41867 * 58.75520 * 16 15 14 43 43 H 1.09005 * 109.46946 * 55.13361 * 17 16 15 44 44 H 1.08999 * 109.47190 * 175.12831 * 17 16 15 45 45 H 0.96995 * 119.99924 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.49631 * 301.41977 * 26 16 15 47 47 H 1.09001 * 109.51656 * 181.34282 * 26 16 15 48 48 H 1.09001 * 109.58916 * 353.37563 * 27 13 11 49 49 H 1.09000 * 109.58306 * 113.65752 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2171 3.0357 -1.4424 6 6 3.4687 3.4704 -2.8632 7 8 3.0772 2.7899 -3.7817 8 8 4.1287 4.6132 -3.1085 9 6 2.1389 -1.1673 -0.0005 10 8 3.3488 -1.1693 0.0912 11 6 1.3958 -2.4591 -0.1139 12 8 0.9295 -2.9798 0.8779 13 7 1.2436 -3.0454 -1.3179 14 6 0.6134 -4.3676 -1.4322 15 6 -0.5388 -4.2827 -2.4383 16 6 -0.0097 -3.7186 -3.7625 17 6 -1.1487 -3.6620 -4.7825 18 6 -1.6108 -5.0614 -5.0977 19 1 -1.1395 -5.9065 -4.6181 20 6 -2.6359 -5.2626 -5.9975 21 7 -3.2101 -4.2334 -6.5811 22 14 -3.2093 -6.9971 -6.3876 23 1 -4.2916 -7.3839 -5.4474 24 1 -3.7219 -7.0475 -7.7804 25 1 -2.0698 -7.9388 -6.2452 26 6 0.5427 -2.3094 -3.5363 27 6 1.7053 -2.3747 -2.5409 28 1 -0.3634 -0.0930 1.0234 29 1 -0.3633 0.9329 -0.4312 30 1 -0.3634 -0.8398 -0.5923 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 3.0416 0.9507 -1.9563 34 1 1.5001 1.8408 -1.9563 35 1 2.6276 3.7952 -0.9287 36 1 4.1694 2.9057 -0.9285 37 1 4.2665 4.8503 -4.0358 38 1 1.3484 -5.0941 -1.7789 39 1 0.2276 -4.6738 -0.4599 40 1 -0.9527 -5.2776 -2.6022 41 1 -1.3152 -3.6249 -2.0475 42 1 0.7839 -4.3636 -4.1398 43 1 -1.9789 -3.0897 -4.3686 44 1 -0.7956 -3.1818 -5.6951 45 1 -3.9315 -4.3749 -7.2138 46 1 -0.2441 -1.6703 -3.1354 47 1 0.8965 -1.9007 -4.4828 48 1 2.0377 -1.3648 -2.3006 49 1 2.5310 -2.9372 -2.9766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583500001.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:11 Heat of formation + Delta-G solvation = -200.468155 kcal Electronic energy + Delta-G solvation = -30619.729179 eV Core-core repulsion = 26352.240874 eV Total energy + Delta-G solvation = -4267.488305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16045 -41.19064 -40.18944 -38.77002 -37.45788 -37.00409 -35.80720 -34.51527 -34.02436 -32.23467 -30.15922 -29.31332 -27.93897 -26.66065 -25.59501 -24.14091 -23.73238 -22.56671 -21.62741 -21.08034 -19.97301 -19.02566 -18.86754 -18.37067 -18.24722 -17.78373 -17.26096 -17.14492 -16.56314 -16.42393 -16.00790 -15.88442 -15.35284 -15.28619 -14.97331 -14.77392 -14.57314 -14.32581 -14.25372 -14.08599 -13.92606 -13.54484 -13.49942 -13.34366 -13.07425 -12.93351 -12.76384 -12.73091 -12.61611 -12.48786 -12.48458 -12.32125 -12.16572 -11.83943 -11.73607 -11.61301 -11.34928 -11.07052 -10.95448 -10.70493 -10.50514 -9.97396 -9.86580 -8.15549 -6.24065 0.86997 0.94611 1.27627 1.41895 1.42315 1.45558 1.52652 2.07176 2.32625 2.43345 3.00190 3.18560 3.73452 3.82945 3.93327 3.96586 3.97574 4.04830 4.12551 4.14329 4.33060 4.39810 4.42432 4.50790 4.54128 4.57339 4.70219 4.70927 4.75674 4.79708 4.84385 4.88853 4.99720 5.03583 5.15410 5.18714 5.30571 5.34642 5.36316 5.47748 5.57460 5.69332 5.80622 5.88528 5.91113 6.01821 6.30998 6.58709 6.61788 6.92598 7.03300 7.44439 8.96154 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.002794 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.402036 B =10020.228552 C =11815.792637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.592 5.592 3 C 0.112 3.888 4 C -0.125 4.125 5 C -0.104 4.104 6 C 0.477 3.523 7 O -0.559 6.559 8 O -0.516 6.516 9 C 0.519 3.481 10 O -0.540 6.540 11 C 0.512 3.488 12 O -0.551 6.551 13 N -0.585 5.585 14 C 0.114 3.886 15 C -0.107 4.107 16 C -0.074 4.074 17 C 0.035 3.965 18 C -0.527 4.527 19 H 0.064 0.936 20 C -0.001 4.001 21 N -0.935 5.935 22 Si 0.956 3.044 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.263 1.263 26 C -0.118 4.118 27 C 0.115 3.885 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.054 0.946 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.127 0.873 37 H 0.425 0.575 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.062 0.938 43 H -0.010 1.010 44 H -0.011 1.011 45 H 0.261 0.739 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.462 17.991 13.450 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.325 5.325 3 C -0.009 4.009 4 C -0.164 4.164 5 C -0.141 4.141 6 C 0.322 3.678 7 O -0.450 6.450 8 O -0.329 6.329 9 C 0.301 3.699 10 O -0.417 6.417 11 C 0.295 3.705 12 O -0.429 6.429 13 N -0.318 5.318 14 C -0.007 4.007 15 C -0.145 4.145 16 C -0.093 4.093 17 C -0.002 4.002 18 C -0.565 4.565 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.576 5.576 22 Si 0.781 3.219 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.187 1.187 26 C -0.156 4.156 27 C -0.007 4.007 28 H 0.093 0.907 29 H 0.134 0.866 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.287 0.713 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.558 17.483 14.066 25.714 hybrid contribution -0.618 -0.869 -1.517 1.854 sum 11.941 16.614 12.549 24.002 Atomic orbital electron populations 1.22140 0.76894 1.04989 1.03391 1.47941 1.08622 1.05276 1.70680 1.21814 0.98900 0.83573 0.96620 1.21742 1.01319 0.96124 0.97184 1.21315 1.05148 0.98473 0.89188 1.24021 0.72734 0.77515 0.93559 1.90779 1.50258 1.55274 1.48730 1.84493 1.70114 1.40307 1.38016 1.20148 0.87435 0.85188 0.77083 1.90768 1.13846 1.86831 1.50293 1.20453 0.79691 0.86529 0.83873 1.90757 1.49192 1.65888 1.37035 1.48257 1.57552 1.20083 1.05876 1.21828 0.95575 0.82482 1.00854 1.21803 0.96464 1.02234 0.94030 1.21114 0.97702 0.95313 0.95147 1.18987 0.92825 0.95403 0.92999 1.21672 1.17159 0.93967 1.23714 0.91804 1.25895 0.97017 1.00673 0.96219 1.70091 1.25606 1.31963 1.29898 0.85585 0.78783 0.80308 0.77214 1.20050 1.21291 1.18731 1.21887 0.97181 0.97671 0.98868 1.21884 0.97302 0.97642 0.83916 0.90687 0.86598 0.92718 0.85425 0.89420 0.93324 0.90753 0.83872 0.85481 0.71342 0.89648 0.89289 0.90580 0.93037 0.91966 0.99168 0.99241 0.93059 0.91958 0.90393 0.89821 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 10.23 127.77 1.31 2.35 16 2 N -0.59 -11.12 2.87 -848.33 -2.44 -13.55 16 3 C 0.11 1.31 5.42 86.38 0.47 1.77 16 4 C -0.12 -1.64 4.83 30.59 0.15 -1.50 16 5 C -0.10 -0.80 5.81 29.85 0.17 -0.63 16 6 C 0.48 6.93 8.33 71.24 0.59 7.52 16 7 O -0.56 -13.49 16.74 21.96 0.37 -13.13 16 8 O -0.52 -5.08 13.42 -51.41 -0.69 -5.77 16 9 C 0.52 14.05 5.47 87.27 0.48 14.52 16 10 O -0.54 -17.06 16.65 -3.23 -0.05 -17.11 16 11 C 0.51 15.63 5.69 87.27 0.50 16.13 16 12 O -0.55 -19.63 16.51 -3.22 -0.05 -19.68 16 13 N -0.58 -16.87 2.97 -820.49 -2.44 -19.31 16 14 C 0.11 3.35 6.43 86.37 0.56 3.90 16 15 C -0.11 -3.68 5.21 30.78 0.16 -3.52 16 16 C -0.07 -2.76 2.10 -10.66 -0.02 -2.79 16 17 C 0.03 1.73 4.45 29.85 0.13 1.87 16 18 C -0.53 -28.46 8.39 25.60 0.21 -28.24 16 19 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 20 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 21 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 22 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 26 C -0.12 -3.61 5.36 30.67 0.16 -3.45 16 27 C 0.11 3.03 6.32 86.36 0.55 3.57 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.12 1.04 8.03 -2.38 -0.02 1.02 16 30 H 0.05 1.10 6.99 -2.38 -0.02 1.08 16 31 H 0.13 0.51 8.07 -2.38 -0.02 0.49 16 32 H 0.09 1.16 7.36 -2.39 -0.02 1.15 16 33 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 34 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.43 1.43 9.10 -74.06 -0.67 0.76 16 38 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 39 H 0.09 2.66 7.00 -2.39 -0.02 2.65 16 40 H 0.08 2.80 6.93 -2.39 -0.02 2.78 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 43 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 44 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 45 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 46 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.08 2.06 6.37 -2.39 -0.02 2.05 16 49 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -79.77 403.81 3.16 -76.61 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.28 Total: 10.10 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 5.88 Total: 11.94 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -4.59 Total: -88.56 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -0.43 Total: -55.69 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -79.77 3.16 -76.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583500001.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.861 kcal (2) G-P(sol) polarization free energy of solvation -79.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds