Wall clock time and date at job start Tue Mar 31 2020 23:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99807 * 2 1 4 4 C 1.50699 * 109.47039 * 66.04613 * 3 2 1 5 5 H 1.07995 * 120.00459 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99897 * 179.97438 * 4 3 2 7 7 N 1.31506 * 120.00122 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99615 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47167 * 269.99554 * 8 6 4 10 10 H 1.48509 * 109.46744 * 149.99858 * 8 6 4 11 11 H 1.48498 * 109.47116 * 30.00170 * 8 6 4 12 12 C 1.46897 * 110.99823 * 236.04608 * 2 1 3 13 13 C 1.52998 * 109.47540 * 293.95151 * 12 2 1 14 14 H 1.09003 * 109.46557 * 59.99518 * 13 12 2 15 15 O 1.42903 * 109.46923 * 300.00201 * 13 12 2 16 16 C 1.52995 * 109.47312 * 180.02562 * 13 12 2 17 17 N 1.46901 * 109.46673 * 185.00143 * 16 13 12 18 18 C 1.46902 * 110.99756 * 179.97438 * 17 16 13 19 19 H 1.09008 * 115.55401 * 9.27744 * 18 17 16 20 20 C 1.53006 * 117.50247 * 223.60975 * 18 17 16 21 21 C 1.53004 * 117.50123 * 154.98505 * 18 17 16 22 22 H 1.08998 * 117.49244 * 0.02562 * 21 18 17 23 23 C 1.50699 * 117.50142 * 214.98087 * 21 18 17 24 24 C 1.38418 * 120.02204 * 309.01270 * 23 21 18 25 25 F 1.35106 * 120.01762 * 359.97126 * 24 23 21 26 26 C 1.38475 * 119.97160 * 179.70064 * 24 23 21 27 27 C 1.38206 * 120.02607 * 0.59316 * 26 24 23 28 28 C 1.38207 * 120.04721 * 359.68006 * 27 26 24 29 29 C 1.38412 * 120.02724 * 129.28111 * 23 21 18 30 30 F 1.35105 * 120.01084 * 359.97438 * 29 23 21 31 31 H 1.08996 * 109.47179 * 60.00224 * 1 2 3 32 32 H 1.08996 * 109.47259 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47171 * 299.99921 * 1 2 3 34 34 H 1.09000 * 109.47304 * 306.04858 * 3 2 1 35 35 H 1.09005 * 109.47100 * 186.04739 * 3 2 1 36 36 H 0.96997 * 120.00267 * 180.02562 * 7 6 4 37 37 H 1.09000 * 109.47147 * 53.95246 * 12 2 1 38 38 H 1.09006 * 109.47168 * 173.95011 * 12 2 1 39 39 H 0.96696 * 114.00409 * 300.00109 * 15 13 12 40 40 H 1.08996 * 109.46982 * 304.99884 * 16 13 12 41 41 H 1.08999 * 109.47062 * 65.00147 * 16 13 12 42 42 H 1.00899 * 111.00087 * 303.94890 * 17 16 13 43 43 H 1.09000 * 117.49286 * 359.97438 * 20 18 17 44 44 H 1.08991 * 117.50296 * 144.99417 * 20 18 17 45 45 H 1.08008 * 119.98925 * 180.27488 * 26 24 23 46 46 H 1.07999 * 119.97496 * 179.70148 * 27 26 24 47 47 H 1.07999 * 119.98487 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0276 3.3492 1.5289 7 7 1.7151 3.9387 2.6622 8 14 3.0007 4.2758 0.2313 9 1 4.4531 4.0625 0.4555 10 1 2.6933 5.7258 0.3237 11 1 2.6292 3.7760 -1.1168 12 6 1.9954 -0.7660 -1.1376 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9322 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7298 -4.4352 -2.0565 18 6 2.2383 -5.2331 -3.1802 19 1 2.9784 -4.7397 -3.8104 20 6 1.2649 -6.1994 -3.8582 21 6 2.3844 -6.7412 -2.9669 22 1 2.1027 -7.1412 -1.9929 23 6 3.5406 -7.4310 -3.6439 24 6 3.7603 -7.2468 -4.9981 25 9 2.9378 -6.4488 -5.7138 26 6 4.8267 -7.8762 -5.6178 27 6 5.6642 -8.6978 -4.8874 28 6 5.4424 -8.8869 -3.5364 29 6 4.3803 -8.2536 -2.9133 30 9 4.1641 -8.4382 -1.5925 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.5610 1.9274 -0.8309 35 1 3.0797 1.3445 -0.1083 36 1 1.9897 4.8548 2.8242 37 1 1.5610 -0.3872 -2.0628 38 1 3.0797 -0.6611 -1.1757 39 1 3.1652 -2.6771 0.2787 40 1 1.8160 -2.6058 -3.0857 41 1 3.2697 -3.0086 -2.1408 42 1 1.9999 -4.8410 -1.1731 43 1 0.2473 -6.2434 -3.4702 44 1 1.3644 -6.3417 -4.9342 45 1 5.0010 -7.7291 -6.6736 46 1 6.4928 -9.1921 -5.3726 47 1 6.0978 -9.5288 -2.9665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591764604.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:20 Heat of formation + Delta-G solvation = -68.270912 kcal Electronic energy + Delta-G solvation = -28777.398844 eV Core-core repulsion = 24404.555526 eV Total energy + Delta-G solvation = -4372.843318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.70493 -49.42463 -39.68115 -38.58349 -37.59994 -35.69412 -33.66423 -32.45014 -31.09416 -30.82896 -29.49041 -27.60482 -25.86515 -24.45585 -23.50344 -23.25622 -21.76304 -21.51714 -20.91765 -20.09166 -18.63045 -17.91782 -17.05155 -16.76893 -16.51530 -16.19922 -16.03881 -16.02189 -15.78247 -15.59409 -15.12997 -14.88844 -14.54628 -14.39415 -14.12879 -13.72656 -13.68115 -13.41591 -13.18210 -12.72985 -12.68618 -12.58791 -12.39169 -12.20767 -12.14360 -11.61738 -11.37276 -11.22958 -11.07049 -10.99807 -10.95436 -10.75480 -10.52744 -10.26792 -10.03206 -9.60000 -9.30538 -9.27116 -9.19418 -8.55961 -8.47071 -7.31762 -6.03562 -4.00612 0.39301 0.41865 2.73774 3.27810 3.34559 3.35242 3.36788 3.51009 3.64925 3.86547 4.03535 4.09647 4.25320 4.42293 4.53275 4.56325 4.60706 4.74591 4.82255 4.93039 5.14936 5.18195 5.19679 5.21441 5.29678 5.33569 5.37860 5.47010 5.52177 5.58367 5.60270 5.66673 5.75118 5.87158 5.94770 6.12785 6.21025 6.25927 6.33378 6.70734 6.79091 6.87137 7.00721 7.14579 7.59273 7.89964 7.91946 8.09493 8.67924 9.06434 9.57915 11.09624 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.001860 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.126612 B =15048.489274 C =15127.675239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.022 3.978 13 C 0.114 3.886 14 H 0.106 0.894 15 O -0.544 6.544 16 C 0.029 3.971 17 N -0.651 5.651 18 C 0.042 3.958 19 H 0.100 0.900 20 C -0.172 4.172 21 C -0.139 4.139 22 H 0.124 0.876 23 C -0.115 4.115 24 C 0.125 3.875 25 F -0.122 7.122 26 C -0.160 4.160 27 C -0.069 4.069 28 C -0.160 4.160 29 C 0.132 3.868 30 F -0.127 7.127 31 H 0.010 0.990 32 H 0.051 0.949 33 H 0.079 0.921 34 H -0.013 1.013 35 H 0.021 0.979 36 H 0.263 0.737 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.368 0.632 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.352 0.648 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.238 -28.601 -19.306 35.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.539 5.539 8 Si 0.702 3.298 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.108 4.108 13 C 0.054 3.946 14 H 0.124 0.876 15 O -0.348 6.348 16 C -0.101 4.101 17 N -0.283 5.283 18 C -0.069 4.069 19 H 0.118 0.882 20 C -0.209 4.209 21 C -0.159 4.159 22 H 0.142 0.858 23 C -0.117 4.117 24 C 0.106 3.894 25 F -0.100 7.100 26 C -0.179 4.179 27 C -0.087 4.087 28 C -0.179 4.179 29 C 0.112 3.888 30 F -0.105 7.105 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.004 0.996 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.214 0.786 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.173 0.827 43 H 0.122 0.878 44 H 0.140 0.860 45 H 0.161 0.839 46 H 0.162 0.838 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.129 -28.579 -18.869 34.791 hybrid contribution 1.656 1.181 -1.202 2.363 sum 7.786 -27.399 -20.072 34.845 Atomic orbital electron populations 1.22277 0.88179 0.99713 1.01045 1.61849 1.07452 1.15974 1.39073 1.20203 0.94724 0.84218 0.97302 1.21042 1.35514 0.97150 1.00832 0.90033 1.24914 0.95883 0.97376 0.95285 1.69890 1.46951 1.13258 1.23821 0.86867 0.80859 0.79322 0.82711 1.20195 1.21186 1.19397 1.22747 1.00339 0.94202 0.93513 1.21978 0.99218 0.90688 0.82763 0.87639 1.86619 1.24911 1.84814 1.38457 1.22758 0.97726 0.88879 1.00693 1.60200 1.61670 1.01789 1.04643 1.22501 0.99888 0.87583 0.96927 0.88231 1.23908 0.95517 1.01188 1.00321 1.21309 0.96326 0.96512 1.01721 0.85822 1.19249 0.98752 1.01146 0.92560 1.17208 0.90708 0.93153 0.88364 1.91376 1.69751 1.71175 1.77710 1.21244 0.95227 0.99625 1.01777 1.20858 0.98617 0.96444 0.92809 1.21252 0.98188 1.02419 0.96000 1.17155 0.95641 0.97732 0.78241 1.91544 1.94247 1.93620 1.31090 0.97155 0.93056 0.90251 0.99552 0.96065 0.92686 0.95141 0.91322 0.78619 0.90087 0.94724 0.82692 0.87769 0.85992 0.83873 0.83805 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.16 60.06 0.55 1.27 16 2 N -0.52 -11.04 4.62 -244.37 -1.13 -12.17 16 3 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 4 C -0.51 -14.67 9.07 -34.44 -0.31 -14.98 16 5 H 0.08 2.58 7.35 -52.49 -0.39 2.19 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 8 Si 0.87 21.67 27.47 -169.99 -4.67 17.01 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 12 C 0.02 0.36 4.62 -3.83 -0.02 0.34 16 13 C 0.11 1.59 3.08 -26.73 -0.08 1.50 16 14 H 0.11 1.60 6.47 -51.93 -0.34 1.26 16 15 O -0.54 -8.17 12.72 -35.23 -0.45 -8.62 16 16 C 0.03 0.33 5.21 -3.83 -0.02 0.31 16 17 N -0.65 -7.18 6.75 -106.72 -0.72 -7.90 16 18 C 0.04 0.41 5.52 -67.71 -0.37 0.04 16 19 H 0.10 1.00 7.64 -51.92 -0.40 0.61 16 20 C -0.17 -1.58 9.59 -26.72 -0.26 -1.84 16 21 C -0.14 -1.28 5.68 -91.77 -0.52 -1.81 16 22 H 0.12 1.17 7.70 -51.93 -0.40 0.77 16 23 C -0.12 -0.99 5.65 -104.49 -0.59 -1.58 16 24 C 0.13 0.97 7.05 -39.43 -0.28 0.69 16 25 F -0.12 -1.03 12.91 2.25 0.03 -1.00 16 26 C -0.16 -0.89 10.02 -39.51 -0.40 -1.28 16 27 C -0.07 -0.31 10.04 -39.60 -0.40 -0.71 16 28 C -0.16 -0.92 10.02 -39.51 -0.40 -1.32 16 29 C 0.13 1.08 7.25 -39.43 -0.29 0.79 16 30 F -0.13 -1.19 16.51 2.25 0.04 -1.15 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.05 0.90 6.30 -51.93 -0.33 0.57 16 33 H 0.08 1.76 6.86 -51.93 -0.36 1.40 16 34 H -0.01 -0.33 7.18 -51.93 -0.37 -0.70 16 35 H 0.02 0.52 7.36 -51.93 -0.38 0.14 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.07 1.08 7.93 -51.93 -0.41 0.67 16 39 H 0.37 4.48 9.04 45.56 0.41 4.89 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.35 3.93 8.24 -39.29 -0.32 3.60 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.12 1.07 5.13 -51.93 -0.27 0.80 16 45 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 46 H 0.14 0.23 8.06 -52.49 -0.42 -0.19 16 47 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -32.61 387.29 -9.88 -42.49 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.09 Total: 5.35 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.49 Total: -12.73 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -1.08 Total: -47.19 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.45 Total: -8.62 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.07 Total: -2.15 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.61 -9.88 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591764604.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.780 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds