Wall clock time and date at job start Tue Mar 31 2020 23:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46893 * 111.00376 * 2 1 4 4 C 1.50705 * 109.47080 * 66.04512 * 3 2 1 5 5 H 1.07998 * 119.99934 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99708 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00347 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99744 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46900 * 60.00365 * 8 6 4 10 10 H 1.48494 * 109.47207 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47116 * 300.00805 * 8 6 4 12 12 C 1.46905 * 110.99761 * 236.04662 * 2 1 3 13 13 C 1.52998 * 109.47119 * 199.85473 * 12 2 1 14 14 H 1.09007 * 109.46960 * 300.46128 * 13 12 2 15 15 O 1.42897 * 109.47515 * 60.45861 * 13 12 2 16 16 C 1.52997 * 109.46913 * 180.46236 * 13 12 2 17 17 N 1.46905 * 109.47050 * 179.97438 * 16 13 12 18 18 C 1.46901 * 111.00236 * 180.02562 * 17 16 13 19 19 H 1.08998 * 115.54646 * 9.33066 * 18 17 16 20 20 C 1.53003 * 117.51906 * 223.63120 * 18 17 16 21 21 C 1.52994 * 117.49884 * 155.00176 * 18 17 16 22 22 H 1.08998 * 117.50066 * 359.97438 * 21 18 17 23 23 C 1.50704 * 117.49714 * 215.00390 * 21 18 17 24 24 C 1.38233 * 119.98731 * 299.99620 * 23 21 18 25 25 C 1.38178 * 120.05046 * 180.02562 * 24 23 21 26 26 C 1.38490 * 120.02901 * 359.97438 * 25 24 23 27 27 F 1.35098 * 120.01774 * 180.02562 * 26 25 24 28 28 C 1.38398 * 119.97193 * 0.02562 * 26 25 24 29 29 C 1.38444 * 119.95303 * 0.27705 * 28 26 25 30 30 F 1.35088 * 120.01785 * 179.69951 * 29 28 26 31 31 H 1.08993 * 109.47545 * 188.77770 * 1 2 3 32 32 H 1.09004 * 109.46730 * 308.77342 * 1 2 3 33 33 H 1.09004 * 109.47447 * 68.77478 * 1 2 3 34 34 H 1.08995 * 109.47523 * 186.04901 * 3 2 1 35 35 H 1.09006 * 109.47340 * 306.05072 * 3 2 1 36 36 H 0.96996 * 120.00213 * 179.97438 * 7 6 4 37 37 H 1.09001 * 109.47003 * 79.84984 * 12 2 1 38 38 H 1.09008 * 109.46949 * 319.85317 * 12 2 1 39 39 H 0.96705 * 113.99737 * 60.00349 * 15 13 12 40 40 H 1.09003 * 109.47094 * 60.00173 * 16 13 12 41 41 H 1.08997 * 109.47611 * 299.99363 * 16 13 12 42 42 H 1.00902 * 110.99781 * 56.04492 * 17 16 13 43 43 H 1.08993 * 117.49742 * 145.02593 * 20 18 17 44 44 H 1.09000 * 117.49464 * 0.02562 * 20 18 17 45 45 H 1.08003 * 119.97426 * 359.97438 * 24 23 21 46 46 H 1.08007 * 119.98478 * 180.02562 * 25 24 23 47 47 H 1.08003 * 120.02568 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7131 4.0014 0.6154 8 14 1.5841 4.1864 3.1387 9 1 2.1759 3.4286 4.2704 10 1 2.1162 5.5728 3.1387 11 1 0.1069 4.2236 3.2866 12 6 1.9954 -0.7660 -1.1377 13 6 3.4448 -1.1668 -0.8557 14 1 4.0463 -0.2707 -0.7028 15 8 3.4945 -1.9798 0.3184 16 6 3.9967 -1.9547 -2.0454 17 7 5.3885 -2.3390 -1.7750 18 6 5.9529 -3.0984 -2.8987 19 1 5.3421 -3.1262 -3.8011 20 6 6.7802 -4.3420 -2.5670 21 6 7.4725 -3.0755 -3.0745 22 1 8.0535 -2.4966 -2.3567 23 6 8.0104 -3.0931 -4.4822 24 6 7.7160 -4.1515 -5.3212 25 6 8.2089 -4.1692 -6.6119 26 6 8.9984 -3.1262 -7.0667 27 9 9.4798 -3.1435 -8.3288 28 6 9.2939 -2.0660 -6.2276 29 6 8.8046 -2.0522 -4.9326 30 9 9.0973 -1.0210 -4.1105 31 1 -0.3634 -1.0155 0.1568 32 1 -0.3633 0.6436 0.8012 33 1 -0.3634 0.3721 -0.9580 34 1 3.0797 1.3443 -0.1083 35 1 1.5611 1.9274 -0.8309 36 1 2.9877 4.9175 0.7773 37 1 1.9565 -0.1526 -2.0378 38 1 1.3921 -1.6623 -1.2824 39 1 2.9802 -2.7962 0.2535 40 1 3.9588 -1.3344 -2.9410 41 1 3.3952 -2.8507 -2.1984 42 1 5.4589 -2.8605 -0.9141 43 1 6.7137 -5.1878 -3.2511 44 1 6.9055 -4.5970 -1.5147 45 1 7.1007 -4.9656 -4.9673 46 1 7.9778 -4.9965 -7.2667 47 1 9.9098 -1.2523 -6.5812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600756391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:27 Heat of formation + Delta-G solvation = -104.871426 kcal Electronic energy + Delta-G solvation = -28488.487848 eV Core-core repulsion = 24114.057413 eV Total energy + Delta-G solvation = -4374.430435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.05192 -50.02507 -40.56869 -39.55699 -38.30174 -37.06581 -34.60498 -34.43308 -31.86977 -31.37771 -30.35174 -29.24980 -26.86759 -25.24219 -25.06916 -23.89576 -22.82200 -22.54502 -21.74816 -21.39256 -19.33286 -18.61691 -18.26711 -17.67144 -17.17210 -17.10684 -16.96533 -16.80011 -16.55571 -16.41129 -16.31784 -15.90577 -15.52793 -15.46429 -15.31336 -14.94286 -14.80009 -14.36551 -14.01322 -13.91100 -13.67611 -13.39201 -13.28660 -13.10356 -13.04210 -12.82266 -12.58405 -12.56899 -12.49779 -12.33292 -12.29922 -12.17059 -11.91362 -11.49789 -11.42886 -11.33171 -10.75960 -10.60508 -10.10243 -9.68166 -9.03798 -8.94518 -8.20106 -6.29954 -0.13156 -0.02921 1.39585 1.43860 1.51504 2.22740 2.40305 2.79130 2.86094 2.95940 3.12160 3.34351 3.39624 3.55861 3.63102 3.72694 3.88992 3.94958 3.99136 4.07255 4.10578 4.19028 4.23792 4.32806 4.46354 4.57228 4.64169 4.67204 4.78322 4.79021 4.79981 4.86275 4.88798 4.94522 5.06541 5.09274 5.09688 5.14786 5.26270 5.30996 5.33557 5.64598 5.73470 6.05314 6.09154 6.35296 6.42933 6.65579 6.86158 7.08013 7.39362 8.90899 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.001955 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.669882 B =14321.533091 C =15208.592719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.541 5.541 3 C 0.210 3.790 4 C -0.523 4.523 5 H 0.063 0.937 6 C -0.002 4.002 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.026 3.974 13 C 0.125 3.875 14 H 0.058 0.942 15 O -0.557 6.557 16 C 0.048 3.952 17 N -0.674 5.674 18 C 0.039 3.961 19 H 0.122 0.878 20 C -0.163 4.163 21 C -0.132 4.132 22 H 0.096 0.904 23 C -0.091 4.091 24 C -0.059 4.059 25 C -0.147 4.147 26 C 0.109 3.891 27 F -0.138 7.138 28 C -0.196 4.196 29 C 0.108 3.892 30 F -0.144 7.144 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.011 0.989 34 H 0.001 0.999 35 H -0.043 1.043 36 H 0.264 0.736 37 H 0.026 0.974 38 H 0.100 0.900 39 H 0.380 0.620 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.354 0.646 43 H 0.130 0.870 44 H 0.107 0.893 45 H 0.176 0.824 46 H 0.172 0.828 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.779 -24.064 -15.315 29.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.265 5.265 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.200 4.200 7 N -0.577 5.577 8 Si 0.794 3.206 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.189 1.189 12 C -0.103 4.103 13 C 0.065 3.935 14 H 0.076 0.924 15 O -0.363 6.363 16 C -0.082 4.082 17 N -0.306 5.306 18 C -0.071 4.071 19 H 0.140 0.860 20 C -0.201 4.201 21 C -0.151 4.151 22 H 0.115 0.885 23 C -0.093 4.093 24 C -0.077 4.077 25 C -0.165 4.165 26 C 0.090 3.910 27 F -0.117 7.117 28 C -0.215 4.215 29 C 0.088 3.912 30 F -0.123 7.123 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.019 0.981 35 H -0.025 1.025 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.119 0.881 39 H 0.228 0.772 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.176 0.824 43 H 0.148 0.852 44 H 0.126 0.874 45 H 0.193 0.807 46 H 0.189 0.811 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.651 -22.983 -14.911 29.046 hybrid contribution -0.534 0.954 -0.296 1.133 sum 9.117 -22.028 -15.206 28.277 Atomic orbital electron populations 1.22255 0.87424 1.01838 0.99435 1.61938 1.07916 1.14954 1.41714 1.19359 0.93573 0.84067 0.94654 1.21459 1.34749 0.97422 1.02480 0.91933 1.25961 0.95070 0.98180 1.00793 1.70087 1.39403 1.11875 1.36307 0.85427 0.78931 0.77092 0.79121 1.19466 1.20862 1.18923 1.22790 0.96977 0.98744 0.91750 1.21670 0.94014 0.92961 0.84882 0.92416 1.86660 1.73932 1.36988 1.38698 1.22479 0.88420 0.99456 0.97803 1.59824 1.18942 1.46762 1.05024 1.22599 0.91349 0.97022 0.96160 0.86031 1.23761 1.01429 0.91409 1.03522 1.21122 0.96542 1.04329 0.93140 0.88547 1.19423 0.98837 0.94650 0.96351 1.21112 0.97893 0.97207 0.91445 1.21518 0.98349 0.99011 0.97660 1.17468 0.97888 0.96065 0.79620 1.91520 1.86458 1.96555 1.37145 1.21137 1.05804 1.01558 0.93022 1.17424 0.99318 0.86141 0.88278 1.91506 1.91841 1.57116 1.71816 0.89800 0.92758 0.97013 0.98134 1.02500 0.92757 0.95601 0.88142 0.77192 0.90774 0.91541 0.82399 0.85186 0.87446 0.80663 0.81066 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 9.37 127.69 1.20 2.65 16 2 N -0.54 -23.37 4.56 -927.03 -4.22 -27.59 16 3 C 0.21 11.58 4.55 85.56 0.39 11.97 16 4 C -0.52 -30.75 8.39 25.60 0.21 -30.53 16 5 H 0.06 3.60 7.17 -2.91 -0.02 3.57 16 6 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 7 N -0.94 -58.48 13.29 21.45 0.28 -58.19 16 8 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 12 C 0.03 0.88 4.66 86.30 0.40 1.28 16 13 C 0.12 3.98 3.30 30.59 0.10 4.08 16 14 H 0.06 2.47 6.78 -2.38 -0.02 2.45 16 15 O -0.56 -17.18 12.55 -148.98 -1.87 -19.05 16 16 C 0.05 1.09 5.24 86.30 0.45 1.54 16 17 N -0.67 -15.31 6.78 -491.57 -3.33 -18.64 16 18 C 0.04 0.66 5.95 44.91 0.27 0.93 16 19 H 0.12 1.78 7.90 -2.39 -0.02 1.76 16 20 C -0.16 -1.83 9.56 30.60 0.29 -1.54 16 21 C -0.13 -2.37 5.73 -11.54 -0.07 -2.44 16 22 H 0.10 2.25 7.86 -2.39 -0.02 2.23 16 23 C -0.09 -1.55 5.62 -19.81 -0.11 -1.66 16 24 C -0.06 -0.62 9.29 22.25 0.21 -0.41 16 25 C -0.15 -1.55 10.02 22.32 0.22 -1.33 16 26 C 0.11 1.69 7.30 22.37 0.16 1.86 16 27 F -0.14 -2.33 17.27 44.97 0.78 -1.55 16 28 C -0.20 -3.54 10.01 22.36 0.22 -3.32 16 29 C 0.11 2.27 7.24 22.37 0.16 2.43 16 30 F -0.14 -3.79 16.60 44.97 0.75 -3.05 16 31 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.05 2.27 6.67 -2.38 -0.02 2.26 16 33 H 0.01 0.42 8.13 -2.38 -0.02 0.40 16 34 H 0.00 0.04 6.63 -2.39 -0.02 0.02 16 35 H -0.04 -2.55 8.12 -2.38 -0.02 -2.57 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.03 0.90 8.00 -2.39 -0.02 0.88 16 38 H 0.10 2.50 7.94 -2.38 -0.02 2.48 16 39 H 0.38 7.82 9.05 -74.05 -0.67 7.15 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.35 7.66 7.91 -89.69 -0.71 6.95 16 43 H 0.13 0.68 6.17 -2.39 -0.01 0.66 16 44 H 0.11 1.19 8.09 -2.39 -0.02 1.17 16 45 H 0.18 0.65 6.02 -2.91 -0.02 0.64 16 46 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 47 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -74.92 394.86 -1.38 -76.30 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.37 Total: 18.17 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 4.58 Total: -14.18 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -7.27 Total: -104.42 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.87 Total: -19.05 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 1.52 Total: -4.60 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.92 -1.38 -76.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600756391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.573 kcal (2) G-P(sol) polarization free energy of solvation -74.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds