Wall clock time and date at job start Tue Mar 31 2020 23:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99824 * 2 1 4 4 C 1.50705 * 109.47200 * 66.04507 * 3 2 1 5 5 H 1.07998 * 119.99612 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99857 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00319 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99730 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47522 * 119.99897 * 8 6 4 11 11 H 1.48509 * 109.46981 * 239.99795 * 8 6 4 12 12 C 1.46902 * 111.00280 * 236.04575 * 2 1 3 13 13 C 1.53000 * 109.46925 * 293.95250 * 12 2 1 14 14 H 1.09009 * 109.46907 * 60.00513 * 13 12 2 15 15 O 1.42892 * 109.47404 * 299.99990 * 13 12 2 16 16 C 1.52998 * 109.46878 * 179.97438 * 13 12 2 17 17 N 1.46903 * 109.47124 * 185.00440 * 16 13 12 18 18 C 1.46899 * 111.00187 * 180.02562 * 17 16 13 19 19 H 1.09006 * 115.55115 * 9.32869 * 18 17 16 20 20 C 1.53002 * 117.52082 * 223.62829 * 18 17 16 21 21 C 1.52996 * 117.50090 * 154.99398 * 18 17 16 22 22 H 1.09000 * 117.49603 * 0.02562 * 21 18 17 23 23 C 1.50698 * 117.50162 * 215.00111 * 21 18 17 24 24 C 1.38224 * 119.99213 * 299.98426 * 23 21 18 25 25 C 1.38187 * 120.05295 * 180.02562 * 24 23 21 26 26 C 1.38492 * 120.02416 * 0.02562 * 25 24 23 27 27 F 1.35099 * 120.00943 * 179.97438 * 26 25 24 28 28 C 1.38397 * 119.97529 * 359.72914 * 26 25 24 29 29 C 1.38445 * 119.94721 * 0.52975 * 28 26 25 30 30 F 1.35104 * 120.01039 * 179.74070 * 29 28 26 31 31 H 1.09000 * 109.47150 * 183.95252 * 1 2 3 32 32 H 1.08995 * 109.47226 * 303.95477 * 1 2 3 33 33 H 1.09006 * 109.47337 * 63.95735 * 1 2 3 34 34 H 1.09002 * 109.47071 * 186.04128 * 3 2 1 35 35 H 1.08999 * 109.47349 * 306.04553 * 3 2 1 36 36 H 0.97001 * 120.00256 * 180.02562 * 7 6 4 37 37 H 1.09003 * 109.47165 * 173.95127 * 12 2 1 38 38 H 1.09006 * 109.46957 * 53.95232 * 12 2 1 39 39 H 0.96700 * 113.99668 * 300.00105 * 15 13 12 40 40 H 1.08996 * 109.47463 * 64.99836 * 16 13 12 41 41 H 1.09007 * 109.47173 * 305.00147 * 16 13 12 42 42 H 1.00899 * 111.00251 * 56.04792 * 17 16 13 43 43 H 1.08994 * 117.49640 * 145.03085 * 20 18 17 44 44 H 1.08999 * 117.49517 * 0.02562 * 20 18 17 45 45 H 1.08009 * 119.97191 * 0.02562 * 24 23 21 46 46 H 1.08000 * 119.98636 * 180.02562 * 25 24 23 47 47 H 1.07999 * 120.03007 * 180.27174 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2985 5 1 1.0738 1.5115 2.0484 6 6 2.0266 3.3495 1.5284 7 7 2.7118 4.0019 0.6149 8 14 1.5828 4.1868 3.1382 9 1 0.8155 3.2442 3.9914 10 1 2.8246 4.5945 3.8431 11 1 0.7547 5.3877 2.8596 12 6 1.9955 -0.7660 -1.1376 13 6 1.6315 -2.2426 -0.9703 14 1 0.5472 -2.3475 -0.9323 15 8 2.2009 -2.7391 0.2426 16 6 2.1794 -3.0403 -2.1554 17 7 1.7288 -4.4351 -2.0570 18 6 2.2374 -5.2331 -3.1806 19 1 2.9782 -4.7400 -3.8102 20 6 1.2642 -6.1992 -3.8593 21 6 2.3831 -6.7411 -2.9673 22 1 2.1012 -7.1411 -1.9934 23 6 3.5396 -7.4310 -3.6437 24 6 3.6528 -7.4002 -5.0210 25 6 4.7125 -8.0329 -5.6425 26 6 5.6621 -8.6992 -4.8860 27 9 6.6977 -9.3181 -5.4941 28 6 5.5525 -8.7264 -3.5067 29 6 4.4876 -8.0967 -2.8854 30 9 4.3765 -8.1270 -1.5392 31 1 -0.3633 -1.0252 0.0708 32 1 -0.3633 0.5740 0.8524 33 1 -0.3634 0.4512 -0.9234 34 1 3.0797 1.3444 -0.1082 35 1 1.5610 1.9274 -0.8309 36 1 2.9863 4.9181 0.7769 37 1 3.0798 -0.6610 -1.1756 38 1 1.5611 -0.3872 -2.0628 39 1 3.1652 -2.6770 0.2787 40 1 3.2688 -3.0085 -2.1423 41 1 1.8144 -2.6054 -3.0859 42 1 0.7227 -4.4871 -2.0024 43 1 1.3648 -6.3417 -4.9352 44 1 0.2462 -6.2424 -3.4723 45 1 2.9124 -6.8812 -5.6118 46 1 4.8001 -8.0078 -6.7187 47 1 6.2950 -9.2420 -2.9156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600756394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:31 Heat of formation + Delta-G solvation = -103.098978 kcal Electronic energy + Delta-G solvation = -28250.165232 eV Core-core repulsion = 23875.811656 eV Total energy + Delta-G solvation = -4374.353576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.03317 -50.01059 -40.55721 -39.53653 -38.31001 -37.00133 -34.61098 -34.49041 -31.85940 -31.34876 -30.37801 -28.92388 -27.25309 -25.23362 -25.04033 -23.87193 -22.75579 -22.53909 -21.77242 -21.37479 -19.32269 -18.57671 -18.25029 -17.63142 -17.27276 -17.02616 -16.86200 -16.81047 -16.64866 -16.34663 -16.14331 -15.90579 -15.70835 -15.45149 -15.31858 -15.05895 -14.76089 -14.32685 -14.11642 -13.84652 -13.61269 -13.40530 -13.30138 -13.18041 -12.92818 -12.76624 -12.60835 -12.57216 -12.51758 -12.36623 -12.32193 -12.00885 -11.92365 -11.60166 -11.40354 -11.35757 -10.65784 -10.62891 -10.09318 -9.67025 -9.03698 -8.94303 -8.21326 -6.30957 -0.12497 -0.02110 1.40306 1.41373 1.55186 2.23078 2.39929 2.78651 2.85923 2.96687 3.11081 3.33250 3.40204 3.57041 3.64494 3.74440 3.89633 3.93142 3.98327 4.02033 4.14122 4.18133 4.23882 4.32675 4.47552 4.52953 4.65607 4.70239 4.73672 4.77722 4.80032 4.86507 4.89918 4.95563 5.06252 5.07538 5.10099 5.15633 5.18234 5.31991 5.34225 5.64879 5.73997 6.02306 6.06795 6.32885 6.39104 6.64771 6.85650 7.03332 7.38833 8.89743 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021654 B = 0.001660 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.740887 B =16868.082934 C =17117.233068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.024 3.976 13 C 0.128 3.872 14 H 0.093 0.907 15 O -0.555 6.555 16 C 0.042 3.958 17 N -0.660 5.660 18 C 0.038 3.962 19 H 0.117 0.883 20 C -0.169 4.169 21 C -0.124 4.124 22 H 0.103 0.897 23 C -0.092 4.092 24 C -0.061 4.061 25 C -0.149 4.149 26 C 0.108 3.892 27 F -0.139 7.139 28 C -0.195 4.195 29 C 0.112 3.888 30 F -0.141 7.141 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.012 0.988 34 H 0.004 0.996 35 H -0.038 1.038 36 H 0.264 0.736 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.377 0.623 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.350 0.650 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.173 0.827 46 H 0.168 0.832 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 -27.175 -16.736 31.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.203 1.203 12 C -0.105 4.105 13 C 0.068 3.932 14 H 0.111 0.889 15 O -0.361 6.361 16 C -0.088 4.088 17 N -0.290 5.290 18 C -0.073 4.073 19 H 0.135 0.865 20 C -0.208 4.208 21 C -0.144 4.144 22 H 0.121 0.879 23 C -0.093 4.093 24 C -0.079 4.079 25 C -0.168 4.168 26 C 0.089 3.911 27 F -0.118 7.118 28 C -0.214 4.214 29 C 0.093 3.907 30 F -0.119 7.119 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.022 0.978 35 H -0.020 1.020 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.225 0.775 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.170 0.830 43 H 0.143 0.857 44 H 0.128 0.872 45 H 0.190 0.810 46 H 0.186 0.814 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.484 -27.538 -15.715 31.710 hybrid contribution 0.219 1.398 -0.438 1.481 sum 0.704 -26.140 -16.153 30.736 Atomic orbital electron populations 1.22217 0.87822 1.01070 0.99626 1.61911 1.08010 1.14814 1.41730 1.19399 0.93641 0.83976 0.94890 1.21508 1.34693 0.97449 1.02441 0.92139 1.25912 0.95067 0.98073 1.00716 1.70082 1.39435 1.11884 1.36104 0.85331 0.78085 0.78165 0.79009 1.18921 1.20380 1.20273 1.22834 1.00298 0.95347 0.92066 1.21760 0.98236 0.88875 0.84332 0.88892 1.86549 1.25913 1.84934 1.38660 1.22555 1.01120 0.87790 0.97286 1.59891 1.16733 1.09941 1.42453 1.22591 1.01841 0.89011 0.93816 0.86503 1.23773 0.95199 1.01877 0.99909 1.21107 0.96232 0.96622 1.00442 0.87920 1.19413 0.95885 0.99649 0.94347 1.21099 0.97529 0.97046 0.92206 1.21504 0.94060 0.98830 1.02413 1.17480 0.86929 0.96674 0.90022 1.91521 1.56400 1.80625 1.83210 1.21142 1.00559 1.05214 0.94517 1.17350 0.96158 1.00153 0.77035 1.91512 1.95796 1.94814 1.29822 0.90523 0.92826 0.96925 0.97824 1.02033 0.92680 0.91489 0.94722 0.77505 0.90436 0.92764 0.82981 0.85736 0.87221 0.81018 0.81410 0.82913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.14 127.69 1.17 2.75 16 2 N -0.54 -23.38 4.62 -927.03 -4.28 -27.67 16 3 C 0.21 11.14 4.72 85.56 0.40 11.54 16 4 C -0.52 -30.16 8.46 25.60 0.22 -29.94 16 5 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 6 C 0.00 0.01 5.46 84.65 0.46 0.47 16 7 N -0.93 -56.50 13.29 21.44 0.28 -56.21 16 8 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.02 0.79 4.62 86.30 0.40 1.19 16 13 C 0.13 3.37 3.01 30.59 0.09 3.46 16 14 H 0.09 2.42 6.55 -2.38 -0.02 2.41 16 15 O -0.56 -17.13 13.15 -148.98 -1.96 -19.09 16 16 C 0.04 0.83 5.18 86.30 0.45 1.27 16 17 N -0.66 -11.95 6.73 -491.56 -3.31 -15.26 16 18 C 0.04 0.54 5.95 44.91 0.27 0.81 16 19 H 0.12 1.53 7.90 -2.38 -0.02 1.52 16 20 C -0.17 -1.57 9.56 30.60 0.29 -1.28 16 21 C -0.12 -1.85 5.72 -11.54 -0.07 -1.92 16 22 H 0.10 1.95 7.86 -2.39 -0.02 1.94 16 23 C -0.09 -1.34 5.62 -19.82 -0.11 -1.45 16 24 C -0.06 -0.57 9.29 22.25 0.21 -0.36 16 25 C -0.15 -1.46 10.02 22.32 0.22 -1.23 16 26 C 0.11 1.53 7.30 22.37 0.16 1.70 16 27 F -0.14 -2.20 17.27 44.97 0.78 -1.42 16 28 C -0.19 -3.08 10.01 22.36 0.22 -2.86 16 29 C 0.11 2.03 7.25 22.37 0.16 2.19 16 30 F -0.14 -3.13 16.61 44.97 0.75 -2.39 16 31 H 0.08 2.50 6.47 -2.39 -0.02 2.48 16 32 H 0.05 2.29 6.76 -2.39 -0.02 2.27 16 33 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.00 0.21 7.93 -2.39 -0.02 0.19 16 35 H -0.04 -2.20 8.12 -2.39 -0.02 -2.22 16 36 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.07 2.25 7.93 -2.39 -0.02 2.24 16 38 H 0.03 1.11 8.12 -2.38 -0.02 1.09 16 39 H 0.38 10.07 9.05 -74.06 -0.67 9.40 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.35 5.70 8.52 -89.69 -0.76 4.93 16 43 H 0.12 0.56 6.17 -2.39 -0.01 0.54 16 44 H 0.11 0.93 8.09 -2.39 -0.02 0.92 16 45 H 0.17 0.57 6.02 -2.91 -0.02 0.55 16 46 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 47 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -70.35 395.29 -1.59 -71.94 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.42 Total: 16.84 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 4.55 Total: -13.65 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -7.31 Total: -99.13 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -1.96 Total: -19.09 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 1.52 Total: -3.81 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -70.35 -1.59 -71.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600756394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.159 kcal (2) G-P(sol) polarization free energy of solvation -70.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds