Wall clock time and date at job start Wed Apr 1 2020 00:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42906 * 113.99708 * 2 1 4 4 C 1.52999 * 109.46937 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47265 * 174.99801 * 4 3 2 6 6 N 1.46898 * 109.47014 * 295.00127 * 4 3 2 7 7 C 1.46904 * 111.00185 * 275.00117 * 6 4 3 8 8 C 1.53042 * 109.45752 * 275.03062 * 7 6 4 9 9 C 1.53191 * 109.31150 * 178.59896 * 8 7 6 10 10 N 1.46931 * 108.76541 * 54.65324 * 9 8 7 11 11 C 1.36933 * 120.62836 * 126.36313 * 10 9 8 12 12 H 1.07999 * 120.00412 * 331.85734 * 11 10 9 13 13 C 1.38811 * 119.99987 * 151.85995 * 11 10 9 14 14 N 1.31624 * 120.00007 * 343.06934 * 13 11 10 15 15 Si 1.86803 * 120.00211 * 163.06347 * 13 11 10 16 16 H 1.48505 * 109.46752 * 90.00368 * 15 13 11 17 17 H 1.48500 * 109.47193 * 210.00081 * 15 13 11 18 18 H 1.48494 * 109.46978 * 330.00474 * 15 13 11 19 19 C 1.46928 * 118.73716 * 306.38272 * 10 9 8 20 20 C 1.53033 * 109.46443 * 154.97248 * 7 6 4 21 21 C 1.50704 * 109.47333 * 54.99945 * 4 3 2 22 22 C 1.38260 * 119.96305 * 279.73116 * 21 4 3 23 23 C 1.38217 * 120.06811 * 179.72730 * 22 21 4 24 24 C 1.38413 * 119.99882 * 0.53908 * 23 22 21 25 25 F 1.35097 * 120.03726 * 179.75359 * 24 23 22 26 26 C 1.38651 * 119.92855 * 359.73316 * 24 23 22 27 27 F 1.35097 * 120.03570 * 180.02562 * 26 24 23 28 28 C 1.38207 * 119.96449 * 99.99924 * 21 4 3 29 29 H 1.08997 * 109.46500 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46477 * 299.99778 * 1 2 3 31 31 H 1.08996 * 109.46805 * 59.99665 * 1 2 3 32 32 H 1.08997 * 109.47128 * 60.00533 * 3 2 1 33 33 H 1.08998 * 109.47368 * 300.00368 * 3 2 1 34 34 H 1.00901 * 111.00488 * 151.04614 * 6 4 3 35 35 H 1.09004 * 109.45612 * 34.99854 * 7 6 4 36 36 H 1.08998 * 109.49817 * 298.56031 * 8 7 6 37 37 H 1.09000 * 109.49998 * 58.66064 * 8 7 6 38 38 H 1.08999 * 109.59805 * 294.86167 * 9 8 7 39 39 H 1.09001 * 109.70468 * 174.50164 * 9 8 7 40 40 H 0.97001 * 120.00321 * 180.02562 * 14 13 11 41 41 H 1.09000 * 109.58862 * 293.82018 * 19 10 9 42 42 H 1.08998 * 109.70031 * 173.46392 * 19 10 9 43 43 H 1.08997 * 109.49685 * 301.34198 * 20 7 6 44 44 H 1.09000 * 109.49737 * 61.39970 * 20 7 6 45 45 H 1.07992 * 119.96500 * 359.97438 * 22 21 4 46 46 H 1.07995 * 120.00085 * 180.27087 * 23 22 21 47 47 H 1.08003 * 120.00273 * 0.02562 * 28 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 1 3.9785 2.1766 -0.0902 6 7 3.9779 0.5624 1.2543 7 6 4.1208 1.5656 2.3178 8 6 5.5049 2.2122 2.2261 9 6 5.6373 3.2821 3.3145 10 7 5.3425 2.6701 4.6173 11 6 6.2311 2.7740 5.6540 12 1 7.2869 2.8784 5.4519 13 6 5.7749 2.7451 6.9647 14 7 4.5011 2.9530 7.2229 15 14 6.9687 2.4111 8.3621 16 1 7.5328 3.6957 8.8489 17 1 6.2536 1.7321 9.4724 18 1 8.0687 1.5401 7.8758 19 6 4.0763 1.9442 4.7865 20 6 3.9613 0.8895 3.6814 21 6 3.9715 0.3329 -1.1648 22 6 3.9019 -1.0451 -1.0765 23 6 4.2959 -1.8284 -2.1450 24 6 4.7713 -1.2336 -3.3009 25 9 5.1613 -1.9986 -4.3438 26 6 4.8464 0.1482 -3.3873 27 9 5.3095 0.7310 -4.5147 28 6 4.4458 0.9298 -2.3176 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 4.8379 0.0516 1.1212 35 1 3.3538 2.3312 2.2001 36 1 6.2721 1.4512 2.3686 37 1 5.6268 2.6734 1.2461 38 1 4.9307 4.0893 3.1216 39 1 6.6527 3.6786 3.3184 40 1 4.1823 2.9332 8.1388 41 1 3.2423 2.6422 4.7137 42 1 4.0601 1.4558 5.7608 43 1 2.9845 0.4091 3.7372 44 1 4.7428 0.1406 3.8098 45 1 3.5355 -1.5099 -0.1731 46 1 4.2369 -2.9045 -2.0764 47 1 4.5041 2.0063 -2.3836 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611392636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:48 Heat of formation + Delta-G solvation = -101.463513 kcal Electronic energy + Delta-G solvation = -30134.402324 eV Core-core repulsion = 25760.119668 eV Total energy + Delta-G solvation = -4374.282657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.49512 -49.58073 -40.79449 -39.36691 -38.42800 -36.60934 -34.37978 -32.65533 -31.81929 -31.47813 -30.22010 -29.16689 -26.98613 -26.36250 -24.58285 -24.15862 -23.69900 -23.00083 -21.50618 -20.86093 -19.05225 -18.70553 -18.21419 -17.98035 -17.34623 -17.18080 -16.91498 -16.79009 -16.22979 -16.01135 -15.88957 -15.51164 -15.48338 -15.29417 -15.28498 -14.91327 -14.85987 -14.57269 -14.24769 -14.00299 -13.64975 -13.56175 -13.12860 -13.05599 -12.98041 -12.66496 -12.63351 -12.53673 -12.40129 -12.22495 -11.97368 -11.93712 -11.80777 -11.66894 -11.38482 -11.14547 -10.52338 -10.42855 -10.03537 -9.62188 -9.24647 -8.65250 -7.85963 -5.30675 -0.10038 0.05123 1.46889 1.48941 1.58286 2.37483 2.52602 2.77008 2.95191 3.13718 3.29903 3.39074 3.49959 3.69988 3.74550 4.01179 4.06753 4.13641 4.20339 4.32158 4.37573 4.46489 4.54316 4.56674 4.62998 4.68020 4.69966 4.77858 4.79637 4.86761 4.91158 4.93821 4.97178 5.03887 5.09844 5.18235 5.20775 5.33343 5.39387 5.44635 5.56692 5.68082 5.77972 5.78929 6.12369 6.40955 6.43220 6.52184 7.17630 7.89662 8.40253 9.20305 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.002590 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.324104 B =10808.671998 C =11633.993267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.386 6.386 3 C 0.075 3.925 4 C 0.132 3.868 5 H 0.082 0.918 6 N -0.666 5.666 7 C 0.110 3.890 8 C -0.146 4.146 9 C 0.144 3.856 10 N -0.611 5.611 11 C -0.262 4.262 12 H 0.064 0.936 13 C -0.050 4.050 14 N -0.934 5.934 15 Si 0.964 3.036 16 H -0.285 1.285 17 H -0.293 1.293 18 H -0.271 1.271 19 C 0.179 3.821 20 C -0.107 4.107 21 C -0.063 4.063 22 C -0.055 4.055 23 C -0.124 4.124 24 C 0.050 3.950 25 F -0.142 7.142 26 C 0.046 3.954 27 F -0.142 7.142 28 C -0.115 4.115 29 H 0.092 0.908 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.347 0.653 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.014 0.986 39 H 0.049 0.951 40 H 0.249 0.751 41 H -0.006 1.006 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.155 0.845 46 H 0.164 0.836 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.467 -7.197 -21.215 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.304 6.304 3 C -0.002 4.002 4 C 0.022 3.978 5 H 0.100 0.900 6 N -0.297 5.297 7 C 0.000 4.000 8 C -0.187 4.187 9 C 0.018 3.982 10 N -0.335 5.335 11 C -0.393 4.393 12 H 0.082 0.918 13 C -0.246 4.246 14 N -0.580 5.580 15 Si 0.792 3.208 16 H -0.212 1.212 17 H -0.219 1.219 18 H -0.196 1.196 19 C 0.053 3.947 20 C -0.147 4.147 21 C -0.063 4.063 22 C -0.074 4.074 23 C -0.142 4.142 24 C 0.030 3.970 25 F -0.121 7.121 26 C 0.026 3.974 27 F -0.121 7.121 28 C -0.134 4.134 29 H 0.110 0.890 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.166 0.834 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.032 0.968 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.012 0.988 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.172 0.828 46 H 0.182 0.818 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.031 -7.556 -20.973 23.094 hybrid contribution 1.184 0.775 0.397 1.470 sum -4.847 -6.781 -20.576 22.200 Atomic orbital electron populations 1.22814 0.80796 1.03267 0.99990 1.87911 1.19873 1.27309 1.95350 1.22561 0.92030 0.85326 1.00295 1.20538 0.94261 0.96289 0.86701 0.89998 1.60688 1.37948 1.26352 1.04739 1.21288 0.95404 0.92467 0.90813 1.22552 0.98186 0.99274 0.98666 1.20979 0.98156 0.93586 0.85501 1.44330 1.19862 1.60578 1.08682 1.19480 0.89219 1.44513 0.86067 0.91848 1.25767 0.97613 1.01292 0.99886 1.70178 1.15321 1.53692 1.18843 0.85332 0.78575 0.77798 0.79076 1.21211 1.21886 1.19605 1.20572 0.85835 0.91538 0.96787 1.21881 1.00619 0.97853 0.94358 1.19699 0.97819 0.94520 0.94310 1.21154 0.94949 0.92646 0.98615 1.21331 0.99465 1.02648 0.90766 1.17990 1.04634 0.87246 0.87171 1.91489 1.89018 1.75166 1.56400 1.17774 1.04684 0.89762 0.85171 1.91492 1.86758 1.84444 1.49357 1.21087 0.99564 1.01592 0.91205 0.88964 0.94442 0.93583 0.93402 0.91842 0.83364 0.91320 0.92558 0.90374 0.96804 0.93254 0.94148 0.98766 0.93152 0.91866 0.93479 0.82775 0.81836 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.39 -7.69 9.11 -148.98 -1.36 -9.04 16 3 C 0.08 1.37 5.66 71.98 0.41 1.78 16 4 C 0.13 2.36 2.46 44.17 0.11 2.47 16 5 H 0.08 1.34 6.96 -2.39 -0.02 1.32 16 6 N -0.67 -14.71 5.38 -473.17 -2.55 -17.25 16 7 C 0.11 3.12 2.23 44.94 0.10 3.22 16 8 C -0.15 -4.31 5.31 30.67 0.16 -4.15 16 9 C 0.14 5.65 6.52 86.36 0.56 6.22 16 10 N -0.61 -30.03 2.99 -699.09 -2.09 -32.12 16 11 C -0.26 -14.35 9.58 84.03 0.81 -13.55 16 12 H 0.06 3.39 7.88 -2.91 -0.02 3.37 16 13 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 14 N -0.93 -55.07 11.19 21.65 0.24 -54.82 16 15 Si 0.96 44.70 29.59 68.60 2.03 46.73 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 C 0.18 8.44 5.30 86.36 0.46 8.90 16 20 C -0.11 -3.86 5.69 30.67 0.17 -3.69 16 21 C -0.06 -1.06 4.59 -19.87 -0.09 -1.15 16 22 C -0.06 -0.93 8.00 22.27 0.18 -0.75 16 23 C -0.12 -2.02 10.02 22.31 0.22 -1.80 16 24 C 0.05 1.00 7.31 22.41 0.16 1.16 16 25 F -0.14 -3.20 17.18 44.97 0.77 -2.43 16 26 C 0.05 0.93 7.31 22.41 0.16 1.10 16 27 F -0.14 -3.23 17.18 44.97 0.77 -2.45 16 28 C -0.12 -1.92 9.64 22.30 0.22 -1.71 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.98 7.38 -2.39 -0.02 0.96 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.35 7.36 7.73 -89.69 -0.69 6.67 16 35 H 0.07 2.01 7.10 -2.38 -0.02 1.99 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.83 7.41 -2.39 -0.02 1.81 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 40 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 41 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.05 2.74 6.06 -2.39 -0.01 2.73 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.15 2.66 7.47 -2.91 -0.02 2.64 16 46 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 47 H 0.16 2.04 8.04 -2.91 -0.02 2.01 16 Total: -1.00 -64.07 383.11 3.41 -60.66 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.29 Total: 13.38 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.30 Total: -2.64 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -4.40 Total: -104.20 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -1.36 Total: -9.04 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 1.55 Total: -4.88 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.07 3.41 -60.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611392636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.808 kcal (2) G-P(sol) polarization free energy of solvation -64.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds